>ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; PAM; rpm 1
           (LOC418808), mRNA
          Length = 16077

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 72  tgatgaagaagaggaatccaacgagccacct 102
           ||||||||||||||||||||| |||||||||
Sbjct: 870 tgatgaagaagaggaatccaaagagccacct 900

>emb|CR353672.1| Gallus gallus finished cDNA, clone ChEST231o13
          Length = 1096

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 72  tgatgaagaagaggaatccaacgagccacct 102
           ||||||||||||||||||||| |||||||||
Sbjct: 538 tgatgaagaagaggaatccaaagagccacct 568

>ref|NM_015057.2| Homo sapiens MYC binding protein 2 (MYCBP2), mRNA
          Length = 14734

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 72  tgatgaagaagaggaatccaacgagcc 98
           ||||||||||||||||||||| |||||
Sbjct: 526 tgatgaagaagaggaatccaaagagcc 552

>emb|AL159158.12| Human DNA sequence from clone RP11-81G4 on chromosome 13 Contains the
             5' end of a novel gene (KIAA0916) and two CpG islands,
             complete sequence
          Length = 154682

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 72    tgatgaagaagaggaatccaacgagcc 98
             ||||||||||||||||||||| |||||
Sbjct: 15069 tgatgaagaagaggaatccaaagagcc 15043

>gb|AF075587.1|AF075587 Homo sapiens protein associated with Myc mRNA, complete cds
          Length = 14807

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 72  tgatgaagaagaggaatccaacgagcc 98
           ||||||||||||||||||||| |||||
Sbjct: 581 tgatgaagaagaggaatccaaagagcc 607

>gb|AY579201.1| Tetrahymena thermophila DNA topoisomerase type 2 (TOP2A) mRNA,
            complete cds
          Length = 4430

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 66   tgaatctgatgaagaagaggaa 87
            ||||||||||||||||||||||
Sbjct: 4201 tgaatctgatgaagaagaggaa 4222

>ref|XM_809076.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein
            (Tc00.1047053511215.119) partial mRNA
          Length = 1803

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 15   ggagcgatttgaggaggtgaag 36
            ||||||||||||||||||||||
Sbjct: 1068 ggagcgatttgaggaggtgaag 1089

>ref|XM_797553.1| Trypanosoma cruzi strain CL Brener paraxonemal rod protein PAR2
          (Tc00.1047053434931.10) partial mRNA
          Length = 795

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 ggagcgatttgaggaggtgaag 36
          ||||||||||||||||||||||
Sbjct: 60 ggagcgatttgaggaggtgaag 81

>ref|XM_802852.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein
           (Tc00.1047053508961.79) partial mRNA
          Length = 1080

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 15  ggagcgatttgaggaggtgaag 36
           ||||||||||||||||||||||
Sbjct: 345 ggagcgatttgaggaggtgaag 366

>gb|M97548.1|TRBPAR2A Trypanosoma cruzi major paraflagellar rod protein (PAR2) mRNA,
            complete cds
          Length = 2057

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 15   ggagcgatttgaggaggtgaag 36
            ||||||||||||||||||||||
Sbjct: 1116 ggagcgatttgaggaggtgaag 1137

>gb|AC136523.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0018C06,
             complete sequence
          Length = 179695

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    tgatgaagaagaggaatccaa 92
             |||||||||||||||||||||
Sbjct: 27675 tgatgaagaagaggaatccaa 27655

>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence
          Length = 114031

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 69   atctgatgaagaagaggaatc 89
            |||||||||||||||||||||
Sbjct: 8275 atctgatgaagaagaggaatc 8255

>gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, complete sequence
          Length = 198052

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   ttctgcctctgattagttacc 306
             |||||||||||||||||||||
Sbjct: 95885 ttctgcctctgattagttacc 95865

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 72      tgatgaagaagaggaatccaa 92
               |||||||||||||||||||||
Sbjct: 7050831 tgatgaagaagaggaatccaa 7050851

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 72       tgatgaagaagaggaatccaa 92
                |||||||||||||||||||||
Sbjct: 11944861 tgatgaagaagaggaatccaa 11944841



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 372     ttggcttgtttataactgaa 391
               ||||||||||||||||||||
Sbjct: 6742542 ttggcttgtttataactgaa 6742561

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 66       tgaatctgatgaagaagagga 86
                |||||||||||||||||||||
Sbjct: 17929919 tgaatctgatgaagaagagga 17929939

>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0520B06
          Length = 142667

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    tgaatctgatgaagaagagga 86
             |||||||||||||||||||||
Sbjct: 49754 tgaatctgatgaagaagagga 49774

>dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1165C09
          Length = 202985

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     tgatgaagaagaggaatccaa 92
              |||||||||||||||||||||
Sbjct: 168879 tgatgaagaagaggaatccaa 168899

>dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0674B07
          Length = 192191

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    tgatgaagaagaggaatccaa 92
             |||||||||||||||||||||
Sbjct: 96317 tgatgaagaagaggaatccaa 96337

>gb|U91900.1|DBU91900 Dunaliella bardawil phytoene synthase mRNA, complete cds
          Length = 1278

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 25  gaggaggtgaaggcatgcatc 45
           |||||||||||||||||||||
Sbjct: 964 gaggaggtgaaggcatgcatc 984

>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence
          Length = 198815

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   tattaagcacaggtatgtgt 370
             ||||||||||||||||||||
Sbjct: 62727 tattaagcacaggtatgtgt 62708

>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 46      ttccaggccgccggcctcac 65
               ||||||||||||||||||||
Sbjct: 2138803 ttccaggccgccggcctcac 2138822

>ref|NM_001031001.1| Gallus gallus serpin peptidase inhibitor, clade B (ovalbumin), member
            3 (SERPINB3), mRNA
          Length = 1972

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   atctgatgaagaagaggaat 88
            ||||||||||||||||||||
Sbjct: 1181 atctgatgaagaagaggaat 1162

>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08,
             complete sequence
          Length = 94286

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ttggcttgtttataactgaa 391
             ||||||||||||||||||||
Sbjct: 46803 ttggcttgtttataactgaa 46822

>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07,
              complete sequence
          Length = 123167

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 372    ttggcttgtttataactgaa 391
              ||||||||||||||||||||
Sbjct: 113704 ttggcttgtttataactgaa 113723

>gb|DQ465931.1| Fusarium oxysporum isolate SAT75 translation elongation factor 1a
           gene, partial sequence
          Length = 686

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 atcggccaagtcgactctgg 204
           ||||||||||||||||||||
Sbjct: 29  atcggccaagtcgactctgg 48

>gb|AC121917.2| Mus musculus BAC clone RP24-194F23 from 5, complete sequence
          Length = 178113

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   tactgtgcagtttattatta 355
             ||||||||||||||||||||
Sbjct: 77688 tactgtgcagtttattatta 77669

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 41      gcatcttccaggccgccggc 60
               ||||||||||||||||||||
Sbjct: 3489386 gcatcttccaggccgccggc 3489405

>emb|AL954817.9| Mouse DNA sequence from clone RP24-84L18 on chromosome 11 Contains the
             5' end of the gene for a novel protein similar to human
             non-kinase Cdc42 effector protein SPEC2, a heterogeneous
             nuclear ribonucleoprotein A3 (Hnrpa3) pseudogene, three
             novel genes, the Hint1 gene for histidine triad nucleotide
             binding protein and two CpG islands, complete sequence
          Length = 156468

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   cttgtttataactgaaatgc 395
             ||||||||||||||||||||
Sbjct: 40054 cttgtttataactgaaatgc 40073

>gb|J00922.1|CHKY Gallus gallus ovalbumin (oval-Y) gene, complete cds
          Length = 8372

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   atctgatgaagaagaggaat 88
            ||||||||||||||||||||
Sbjct: 7476 atctgatgaagaagaggaat 7457

>gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete sequence
          Length = 173956

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   agtgagagagcaatgaaaat 186
             ||||||||||||||||||||
Sbjct: 96898 agtgagagagcaatgaaaat 96917

>gb|AC096716.3| Homo sapiens BAC clone RP11-8L2 from 4, complete sequence
          Length = 145634

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   gtgttcatcgtgcttgtttc 421
             ||||||||||||||||||||
Sbjct: 85966 gtgttcatcgtgcttgtttc 85985

>gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromosome unknown, complete
             sequence
          Length = 184521

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   ttctgcctctgattagttac 305
             ||||||||||||||||||||
Sbjct: 87761 ttctgcctctgattagttac 87780

>gb|AC164107.3| Mus musculus BAC clone RP23-461D6 from chromosome 14, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   aggttcgcattatctgtggctgct 233
             |||||| |||||||||||||||||
Sbjct: 23311 aggttctcattatctgtggctgct 23334

>gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromosome unknown, complete
              sequence
          Length = 207137

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     atctgatgaagaagaggaat 88
              ||||||||||||||||||||
Sbjct: 177402 atctgatgaagaagaggaat 177383

>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete
             sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    atctgatgaagaagaggaat 88
             ||||||||||||||||||||
Sbjct: 54165 atctgatgaagaagaggaat 54146


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,675,853
Number of Sequences: 3902068
Number of extensions: 3675853
Number of successful extensions: 71752
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71587
Number of HSP's gapped (non-prelim): 165
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)