Clone Information

BLAST Search Result

Clone Name	baal28m19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 sn...	152	8e-37
2	SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 sn...	145	6e-35
3	SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 sn...	145	1e-34
4	RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"	144	2e-34
5	RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"	141	1e-33
6	SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 sn...	141	1e-33
7	RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"	84	4e-16
8	MSL1_YEAST (P40567) U2 small nuclear ribonucleoprotein B"	55	2e-07
9	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	46	8e-05
10	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	45	1e-04
11	FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protei...	45	2e-04
12	FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protei...	45	2e-04
13	SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)	44	3e-04
14	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	44	4e-04
15	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	42	0.002
16	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	41	0.002
17	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	41	0.002
18	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	41	0.003
19	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	40	0.005
20	NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting...	39	0.010
21	PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein	39	0.013
22	PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein	38	0.017
23	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	37	0.038
24	MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote...	37	0.038
25	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	37	0.050
26	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	37	0.050
27	IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN...	35	0.11
28	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	35	0.19
29	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	34	0.25
30	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	34	0.25
31	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	34	0.25
32	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	34	0.25
33	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	34	0.33
34	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	34	0.33
35	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	34	0.33
36	RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31	34	0.33
37	EWS_MOUSE (Q61545) RNA-binding protein EWS	33	0.43
38	EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing...	33	0.43
39	RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro...	33	0.56
40	MDE7_SCHPO (O59784) RNA-binding protein mde7 (Mei4-dependent pro...	33	0.56
41	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	33	0.73
42	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	33	0.73
43	FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)	33	0.73
44	FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)	33	0.73
45	YE56_CAEEL (P90747) Probable cation-transporting ATPase C10C6.6 ...	33	0.73
46	FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncog...	33	0.73
47	PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5....	33	0.73
48	PSD1_DROME (Q9V3P6) 26S proteasome non-ATPase regulatory subunit...	32	0.95
49	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	32	0.95
50	CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor	32	1.2
51	RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2	32	1.2
52	HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (...	32	1.2
53	CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C ...	32	1.2
54	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	32	1.2
55	PHF14_MOUSE (Q9D4H9) PHD finger protein 14	32	1.2
56	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	32	1.6
57	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	32	1.6
58	PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 ...	32	1.6
59	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	32	1.6
60	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	32	1.6
61	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	32	1.6
62	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	32	1.6
63	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	32	1.6
64	RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro...	31	2.1
65	YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in...	31	2.1
66	RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro...	31	2.1
67	HFLK_BUCBP (Q89A39) Protein hflK	31	2.1
68	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	31	2.1
69	ING1_MOUSE (Q9QXV3) Inhibitor of growth protein 1	31	2.1
70	DHH1_YARLI (Q6C0X2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)	31	2.8
71	PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 ...	31	2.8
72	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	31	2.8
73	LYAR_RAT (Q6AYK5) Cell growth-regulating nucleolar protein	30	3.6
74	RLA0_PYRAB (Q9UXS5) Acidic ribosomal protein P0 homolog (L10E)	30	3.6
75	IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 sub...	30	3.6
76	IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 s...	30	3.6
77	HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1...	30	3.6
78	HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1...	30	3.6
79	CALB_CAUCR (Q9A777) Probable coniferyl aldehyde dehydrogenase (E...	30	3.6
80	YCF2_ADICA (Q85B60) Protein ycf2	30	3.6
81	CYP40_ARATH (Q9C566) Peptidyl-prolyl cis-trans isomerase CYP40 (...	30	4.7
82	CP17A_PAPHU (Q9GLD2) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVI...	30	4.7
83	CP17A_PAPCY (Q8HYN0) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVI...	30	4.7
84	CP17A_MACMU (Q8HYM9) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVI...	30	4.7
85	CP17A_MACFA (Q2XVA1) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVI...	30	4.7
86	PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (E...	30	4.7
87	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	30	4.7
88	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	30	4.7
89	PRT1_PICAN (P12806) Putative PRT1 protein	30	4.7
90	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	30	6.1
91	DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC...	30	6.1
92	CP17A_PERLE (Q91Z85) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVI...	30	6.1
93	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	30	6.1
94	MURE_BACTN (Q8A254) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-...	30	6.1
95	HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-l...	30	6.1
96	RAD52_MOUSE (P43352) DNA repair protein RAD52 homolog	29	8.0
97	RW1_HUMAN (Q92545) RW1 protein (Fragment)	29	8.0
98	BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	29	8.0
99	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	29	8.0
100	CLH_DICDI (P25870) Clathrin heavy chain	29	8.0
101	SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cel...	29	8.0
102	RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (...	29	8.0
103	PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 ...	29	8.0
104	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	29	8.0
105	GBP2_HUMAN (P32456) Interferon-induced guanylate-binding protein...	29	8.0
106	POPB_RALSO (Q9RBS1) Protein popB	29	8.0

>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 281

 Score =  152 bits (383), Expect = 8e-37
 Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 9/167 (5%)
 Frame = +1

Query: 70  QPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASAT 249
           +PN TIYINNLNEKIK D LKKSL A+FSQFG+I+++L  ++LK +GQA+V+F++V+SAT
Sbjct: 6   RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSAT 65

Query: 250 EALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDV 429
            AL+ MQ FPFYDKPM+IQYAKT SD++AK  GTFV R+ RKR   KP+ ++       V
Sbjct: 66  NALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERD-RKREKRKPKSQETPATKKAV 124

Query: 430 NQAG----VGMHAYPGAYGAPPLSQLP-----FGAGPKVMMPEIIVP 543
              G    VG    P   G PP++Q P         P  M P  ++P
Sbjct: 125 QGGGATPVVGAVQGP-VPGMPPMTQAPRIMHHMPGQPPYMPPPGMIP 170

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>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 282

 Score =  145 bits (367), Expect = 6e-35
 Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 12/171 (7%)
 Frame = +1

Query: 67  VQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASA 246
           V+PN TIYINNLNEKIK D LKKSL A+FSQFG+I+++L  + LK +GQA+V+F++ +SA
Sbjct: 6   VRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSA 65

Query: 247 TEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHD 426
           T AL+ MQ FPFYDKPM+IQY+KT SD++AK  GTFV R+++++     ++K K  +   
Sbjct: 66  TNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQE----KRKVKVPEVQG 121

Query: 427 VNQAGVGMHAYPGAYG-------APPLSQLP-----FGAGPKVMMPEIIVP 543
           V  A  G    PG  G        P ++Q P      G  P +  P ++ P
Sbjct: 122 VKNAMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPP 172

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>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 286

 Score =  145 bits (365), Expect = 1e-34
 Identities = 82/164 (50%), Positives = 105/164 (64%), Gaps = 8/164 (4%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N TIYINNLNEKIK D LKKSL A+FSQFG+I+++L  + +K +GQA+V+F++V SAT A
Sbjct: 14  NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 73

Query: 256 LKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDVNQ 435
           L+ MQ FPFYDKPM+IQYAKT SD++AK  GT+V R+ RKR   KP K Q+        Q
Sbjct: 74  LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERD-RKREKRKP-KSQETPAAKKAVQ 131

Query: 436 AGVG---MHAYPGAYGAPPLSQLP-----FGAGPKVMMPEIIVP 543
            G     + A     G PP+ Q P         P  M P  ++P
Sbjct: 132 GGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIP 175

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>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"|
          Length = 225

 Score =  144 bits (362), Expect = 2e-34
 Identities = 75/165 (45%), Positives = 112/165 (67%)
 Frame = +1

Query: 67  VQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASA 246
           ++PN TIYINN+N+KIK + LK+SL A+FSQFG +++++A KT+K +GQA+V+F+++ S+
Sbjct: 3   IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62

Query: 247 TEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHD 426
           T AL+++Q FPFY KPM+IQYAKT SD+++K  GTF  +EK+K      EKK+ +     
Sbjct: 63  TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAK----T 112

Query: 427 VNQAGVGMHAYPGAYGAPPLSQLPFGAGPKVMMPEIIVPNNILFV 561
           + QA    +  PG  G P  +     A P   +P+   PN ILF+
Sbjct: 113 MEQAAAAANKKPG-QGTPNAANTQGTAAPNPQVPD-YPPNYILFL 155

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>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"|
          Length = 225

 Score =  141 bits (355), Expect = 1e-33
 Identities = 74/165 (44%), Positives = 111/165 (67%)
 Frame = +1

Query: 67  VQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASA 246
           ++PN TIYINN+N+KIK + LK+SL A+FSQFG +++++A KT+K +GQA+V+F+++ S+
Sbjct: 3   IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSS 62

Query: 247 TEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHD 426
           T AL+++Q FPFY KPM+IQYAKT SD+++K  GTF  +EK+K      EKK+ +     
Sbjct: 63  TNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK------EKKKAK----T 112

Query: 427 VNQAGVGMHAYPGAYGAPPLSQLPFGAGPKVMMPEIIVPNNILFV 561
           V Q     +  PG  G P  +     + P   +P+   PN ILF+
Sbjct: 113 VEQTATTTNKKPG-QGTPNSANTQGNSTPNPQVPD-YPPNYILFL 155

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>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1-A) (Sex determination protein snf)
          Length = 216

 Score =  141 bits (355), Expect = 1e-33
 Identities = 75/150 (50%), Positives = 101/150 (67%), Gaps = 7/150 (4%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATE 252
           PN TIYINNLNEKIK + LKKSL A+FSQFG+I++++A KTLK +GQA+V+F+++ SA+ 
Sbjct: 5   PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64

Query: 253 ALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKR-------NDEKPEKKQKR 411
           AL+ MQ FPFYDKPM+I Y+K+ SD+VAK  GTF  R K+ +        DEK +KK+K 
Sbjct: 65  ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKP 124

Query: 412 EQHHDVNQAGVGMHAYPGAYGAPPLSQLPF 501
               + N         P A    P +Q+ F
Sbjct: 125 SSAENSN---------PNAQTEQPPNQILF 145

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>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"|
          Length = 111

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 38/86 (44%), Positives = 63/86 (73%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALK 261
           T+Y+NNLN+KI  + L+ +L  +FS +G +++++A KT K +GQA VVF D ++A  A+K
Sbjct: 5   TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMK 64

Query: 262 RMQDFPFYDKPMKIQYAKTKSDVVAK 339
            +++F F+ K MKIQYA +KS ++ +
Sbjct: 65  ALKNFIFFGKEMKIQYAHSKSKIIER 90

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>MSL1_YEAST (P40567) U2 small nuclear ribonucleoprotein B"|
          Length = 111

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 26/82 (31%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEV-LAFKTLKHKGQAWVVFEDVASATEAL 258
           T+Y++ LNEKI +  L+ +L  +F+ FG++++V + FK  K +GQA++    +  A+ A 
Sbjct: 29  TLYVSQLNEKINMQRLRVNLFLLFATFGEVLKVSMNFK--KQRGQAFITMRTIDQASLAQ 86

Query: 259 KRMQDFPFYDKPMKIQYAKTKS 324
             +    F+ KP+K++++K+++
Sbjct: 87  ISLNGERFFGKPLKVEFSKSET 108

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>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK--TLKHKGQAWVVFEDVASATEAL 258
           ++I  LN +      +K L AVF + G I EVL  K  T K +G A++ FE+ A A  A 
Sbjct: 10  LFIGGLNRETN----EKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAA 65

Query: 259 KRMQDFPFYDKPMKIQYAKTKS 324
           K M     + K +K++ AK  S
Sbjct: 66  KDMNGKSLHGKAIKVEQAKKPS 87

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>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK---TLKHKGQAWVVFEDVASATEA 255
           ++I  LN +      +K+L AVF ++G+I+EVL  K   T K +G A+V FE  A A +A
Sbjct: 10  LFIGGLNTETN----EKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65

Query: 256 LKRMQDFPFYDKPMKIQYAKTKS 324
            + M       K +K++ A   S
Sbjct: 66  ARDMNGKSLDGKAIKVEQATKPS 88

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>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (Neural-specific SR pro
          Length = 262

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEV---LAFKTLKHKGQAWVVFEDVAS 243
           PN ++++ N+ +  + + L++     F ++G I++V   L F T + +G A+V FEDV  
Sbjct: 8   PNTSLFVRNVADDTRSEDLRRE----FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63

Query: 244 ATEALKRMQDFPFYDKPMKIQYA----KTKSDVVAKADGTFVPREK-------RKRNDEK 390
           A +AL  +       + ++IQ+A    KT + + AK         +       R+     
Sbjct: 64  AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRS 123

Query: 391 PEKKQKREQHHDVN 432
            E+++ R +  D N
Sbjct: 124 YERRRSRSRSFDYN 137

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>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (40 kDa SR-repressor pr
          Length = 262

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEV---LAFKTLKHKGQAWVVFEDVAS 243
           PN ++++ N+ +  + + L++     F ++G I++V   L F T + +G A+V FEDV  
Sbjct: 8   PNTSLFVRNVADDTRSEDLRRE----FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63

Query: 244 ATEALKRMQDFPFYDKPMKIQYA----KTKSDVVAKADGTFVPREK-------RKRNDEK 390
           A +AL  +       + ++IQ+A    KT + + AK         +       R+     
Sbjct: 64  AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRS 123

Query: 391 PEKKQKREQHHDVN 432
            E+++ R +  D N
Sbjct: 124 YERRRSRSRSFDYN 137

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>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)|
          Length = 261

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEV---LAFKTLKHKGQAWVVFEDVAS 243
           PN +++I N+ +  + + L++     F ++G I++V   L F T + +G A+V FEDV  
Sbjct: 8   PNTSLFIRNVADATRPEDLRRE----FGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRD 63

Query: 244 ATEALKRMQDFPFYDKPMKIQYA----KTKSDVVAKADGTFVPREKRKRNDEKPEKKQKR 411
           A +AL  +       + ++IQ+A    KT   + +K      P + R+       + + R
Sbjct: 64  AEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSR 123

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>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK---TLKHKGQAWVVFEDVASATEA 255
           ++I  LN +      +K+L AVF ++G+I+E+L  K   T K +G A+V FE  A A + 
Sbjct: 10  LFIGGLNTETN----EKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDV 65

Query: 256 LKRMQDFPFYDKPMKIQYAKTKS 324
            + M       K +K++ A   S
Sbjct: 66  ARDMNGKSLDGKAIKVEQATKPS 88

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>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK---TLKHKGQAWVVFEDVASATEA 255
           ++I  LN +      +K+L AVF ++G+I+E++  K   T K +G A+V  E  A A +A
Sbjct: 10  LFIGGLNTETN----EKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDA 65

Query: 256 LKRMQDFPFYDKPMKIQYA 312
            + M       K +K++ A
Sbjct: 66  ARDMNGKSLDGKAIKVEQA 84

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>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEV---LAFKTLKHKGQAWVVFEDVASATEA 255
           +Y+ +L+  I  D L+     +F  FG+I  +   +  +T + KG  ++ F D   A +A
Sbjct: 252 LYVGSLHFNITEDMLR----GIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query: 256 LKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKR 378
           L+++  F    +PMK+ +   ++D  A +  +F+  ++ +R
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTD--ASSASSFLDSDELER 346

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>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEV---LAFKTLKHKGQAWVVFEDVASATEA 255
           +Y+ +L+  I  D L+     +F  FG+I  +   +  +T + KG  ++ F D   A +A
Sbjct: 252 LYVGSLHFNITEDMLR----GIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307

Query: 256 LKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKR 378
           L+++  F    +PMK+ +   ++D  A +  +F+  ++ +R
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTD--ASSASSFLDSDELER 346

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>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK---TLKHKGQAWVVFEDVASATEA 255
           +Y+ +L+  I  D L+     +F  FGKI  ++  K   T + KG  ++ F D   A  A
Sbjct: 265 LYVGSLHFNITEDMLR----GIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 320

Query: 256 LKRMQDFPFYDKPMKIQYAKTKSD 327
           L+++  F    +PM++ +   + D
Sbjct: 321 LEQLNGFELAGRPMRVGHVTERLD 344

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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 3/151 (1%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKII--EVLAFKTLKHKGQAWVVFEDVASATEAL 258
           +Y+ NL+  I  + LK+    +FS FG +   +V+       KG  +V F     ATEA+
Sbjct: 320 LYVKNLDPSISDEKLKE----IFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375

Query: 259 KRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDVNQA 438
            ++       KP+ +  A+ K D   +    F        +  +P   Q           
Sbjct: 376 SQLSGKMIESKPLYVAIAQRKEDRRVRLQAQF--------SQVRPVAMQP--------SV 419

Query: 439 GVGMHAYPGAYGAPPLSQLPF-GAGPKVMMP 528
           G  M  YP   G P + Q  F G  P  M+P
Sbjct: 420 GPRMPVYPP--GGPGIGQQMFYGQAPPAMIP 448



 Score = 35.8 bits (81), Expect = 0.086
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTL---KHKGQAWVVFEDVASA 246
           N ++Y+ +L+     +     L   F Q G ++ V   + L   +  G  +V F +   A
Sbjct: 35  NTSLYVGDLD----FNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDA 90

Query: 247 TEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEK 390
             A++ +   P Y KP+++ Y+     V     G    +   +  D K
Sbjct: 91  ARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHK 138

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>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 21/66 (31%), Positives = 36/66 (54%)
 Frame = +1

Query: 118 LDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPM 297
           LD  +  LN +F  FG + EV         G A+V FE+  SA +A++ +    F ++P+
Sbjct: 134 LDVQESELNEIFGPFGPMKEVKILN-----GFAFVEFEEAESAAKAIEEVHGKSFANQPL 188

Query: 298 KIQYAK 315
           ++ Y+K
Sbjct: 189 EVVYSK 194

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>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein|
          Length = 121

 Score = 38.5 bits (88), Expect = 0.013
 Identities = 22/78 (28%), Positives = 39/78 (50%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N  +Y+ NL  KI  D +      +F +FG I ++    T + +G A+VV+ED+  A  A
Sbjct: 14  NRLLYVRNLPYKITSDEMYD----IFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 69

Query: 256 LKRMQDFPFYDKPMKIQY 309
              +  F   ++ + + Y
Sbjct: 70  CDHLSGFNVCNRYLVVLY 87

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>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein|
          Length = 138

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 20/78 (25%), Positives = 41/78 (52%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N  +YI NL  KI  + + +    +F +FG + ++    T + +G A+VV+ED+  A  A
Sbjct: 18  NRILYIKNLPYKITTEEMYE----IFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTA 73

Query: 256 LKRMQDFPFYDKPMKIQY 309
            + +  +   ++ + + Y
Sbjct: 74  CEHLSGYNVSNRYLVVLY 91

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 26/116 (22%), Positives = 53/116 (45%)
 Frame = +1

Query: 61  NGVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVA 240
           + ++P+ T+++ N +     +   + L   F  +GKI+ V   +       A++ +E   
Sbjct: 91  SSMRPSKTLFVINFDAD---NTRTRDLEKHFEPYGKIVNVRIRRNF-----AFIQYEAQE 142

Query: 241 SATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQK 408
            AT AL    +    DK + ++YA    D  A+ +G        +R D  PE++++
Sbjct: 143 DATRALDASNNSKLMDKVISVEYAVKDDD--ARGNG----HSPERRRDRSPERRRR 192

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>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEV-LAFKT--LKHKGQAWVVFEDVASATEA 255
           +++ NL      DA +  L  VFS+FGKI E+ +AF T     KG A+V + +  +A +A
Sbjct: 303 LFVRNL----PYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQA 358

Query: 256 LKRMQDFPFYDKPMKIQYAKTKSDV-VAKADGTFVPREKRKRNDEKPE 396
            K +    F  + M I  A  K    + + + + +P +K+K+   K E
Sbjct: 359 YKELDGKHFQGRLMHILPATAKKTYKIDEHELSKLPLKKQKQIKRKLE 406

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>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 36.6 bits (83), Expect = 0.050
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
 Frame = +1

Query: 67  VQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEV-LAFKT--LKHKGQAWVVFEDV 237
           ++ +  +++ NL+ + K    +  L  VFS FGKI E+ +AF T     KG A+V + D 
Sbjct: 291 IRISARLFVRNLSYETK----ESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADP 346

Query: 238 ASATEALKRMQDFPFYDKPMKIQYAKTKSDV-VAKADGTFVPREKRKRNDEKPE 396
            +A EA + +    F  + + I  A  K    + + + + +P +K+K+   K E
Sbjct: 347 DAAVEAYRNLDGKIFQGRLLHILPASQKKTYKLDEHELSKLPLKKQKQIKRKQE 400

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score = 36.6 bits (83), Expect = 0.050
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I + NL   + LD L +    +FS+FG +++++ F T  ++ QA + + D  S
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVS 233

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQ 417
           A  A   +     Y+    ++I ++K  S  V             K N++K     + + 
Sbjct: 234 AQHAKLSLDGQNIYNACCTLRIDFSKLTSLNV-------------KYNNDKSRDYTRPDL 280

Query: 418 HHDVNQAGVGMHAYPGAYGAPP-LSQLPF-GAG--PKVMMPE---IIVPN 546
               NQ  +       A+GAP  +S  P+ GAG  P   +P+   + VPN
Sbjct: 281 PSGDNQPSLD-QTMAAAFGAPGIMSASPYAGAGFPPTFAIPQAATVSVPN 329

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>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)|
           (Increased sodium tolerance protein 3)
          Length = 148

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +1

Query: 61  NGVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK---TLKHKGQAWVVFE 231
           N  + N  IYI NLN ++     +  +  VFS++G  ++V+  +   T + +G A++ +E
Sbjct: 25  NEYKDNAYIYIGNLNREL----TEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYE 80

Query: 232 DVASATEALKRMQDFPFYDKPMKIQY 309
           D  S   A+  +  F    + +KI +
Sbjct: 81  DQRSTILAVDNLNGFKIGGRALKIDH 106

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>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK--TLKHKGQAWVVFEDVASATEAL 258
           +YI N  E++  ++LK+    +FSQFGK + V   +    K KG  +V +E    A +A+
Sbjct: 193 VYIKNFGEEVDDESLKE----LFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248

Query: 259 KRMQDFPFYDKPMKIQYAKTKSDVVAKADGTF 354
           + M       K + +  A+ K +  A+    F
Sbjct: 249 EEMNGKEISGKIIFVGRAQKKVERQAELKRKF 280

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I + NL   + LD L +    +FS+FG +++++ F T  ++ QA + + D  S
Sbjct: 178 GQSPVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVS 232

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKS 324
           A  A   +     Y+    ++I ++K  S
Sbjct: 233 AQHAKLSLDGQNIYNACCTLRIDFSKLTS 261

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I + NL   + LD L +    +FS+FG +++++ F T  ++ QA + + D  S
Sbjct: 178 GQSPVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVS 232

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKS 324
           A  A   +     Y+    ++I ++K  S
Sbjct: 233 AQHAKLSLDGQNIYNACCTLRIDFSKLTS 261

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I + NL   + LD L +    +FS+FG +++++ F T  ++ QA + + D  S
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVS 233

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKS 324
           A  A   +     Y+    ++I ++K  S
Sbjct: 234 AQHAKLSLDGQNIYNACCTLRIDFSKLTS 262

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I + NL   + LD L +    +FS+FG +++++ F T  ++ QA + + D  S
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVS 233

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKS 324
           A  A   +     Y+    ++I ++K  S
Sbjct: 234 AQHAKLSLDGQNIYNACCTLRIDFSKLTS 262

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>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALKR 264
           +++ NL      D LK SL   F Q  ++   +  KT   KG A++ F D   A  A   
Sbjct: 325 LFLRNLTYSCAEDDLK-SLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383

Query: 265 MQDFPFYDKPMKIQYAKTKSDVV 333
           +   PF  + + +  AK +S ++
Sbjct: 384 LDAKPFQGRLLHVLPAKARSSIL 406



 Score = 33.1 bits (74), Expect = 0.56
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 4/135 (2%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHK----GQAWVVFEDVASAT 249
           TIY+ NLN   K +  +K    +      +I          K    G  +V F+D ASA 
Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679

Query: 250 EALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDV 429
            A+  M  F      ++I+ +    D  A         E RK++  KP+  +   ++   
Sbjct: 680 AAMHAMNGFVLDGHKLEIKLSHQGVDAAA---------EVRKQDSSKPKGTKILIKNLPF 730

Query: 430 NQAGVGMHAYPGAYG 474
                 + +  GAYG
Sbjct: 731 EATKKDVQSLLGAYG 745

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK---TLKHKGQAWVVFEDVASA 246
           + T+Y+  L+EK+    L +    +F Q G ++     K   T +H+G  +V F     A
Sbjct: 12  DATVYVGGLDEKVSEPLLWE----LFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 247 TEALKRMQDFPFYDKPMKIQYA 312
             A+K M     Y KP+++  A
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKA 89

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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFK---TLKHKGQAWVVFEDVASA 246
           + TIY+  L+EK+    L +    +  Q G ++ V   K   T  H+G  +V F     A
Sbjct: 12  DATIYVGGLDEKVSESILWE----LMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67

Query: 247 TEALKRMQDFPFYDKPMKIQYA 312
             A+K +     Y KP+K+  A
Sbjct: 68  DYAIKILNMIKLYGKPIKVNKA 89

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>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31|
          Length = 264

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
 Frame = +1

Query: 130 KKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALKRMQDFPF-YDK-PMKI 303
           +  L  +F ++G++  V     +K  G A+V FED   A +A++++ +FPF Y+K  + +
Sbjct: 15  QSDLERLFDKYGRVDRV----DMK-SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSV 69

Query: 304 QYAK 315
           ++AK
Sbjct: 70  EWAK 73



 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/101 (21%), Positives = 44/101 (43%)
 Frame = +1

Query: 61  NGVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVA 240
           + ++P  T+++ N +    +   +  +   F  +GK+  V   +       ++V FE   
Sbjct: 87  SNLKPTKTLFVINFDP---IRTKEHDIEKHFEPYGKVTNVRIRRNF-----SFVQFETQE 138

Query: 241 SATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPR 363
            AT+AL+  Q     D+ + ++YA    D     +G   PR
Sbjct: 139 DATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPR 179

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>EWS_MOUSE (Q61545) RNA-binding protein EWS|
          Length = 655

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKI----------IEV-LAFKTLKHKGQAWV 222
           N  IY+  LN+ + LD     L   F Q G +          I + L  +T K KG A V
Sbjct: 359 NSAIYVQGLNDNVTLD----DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 414

Query: 223 VFEDVASATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKR 372
            +ED  +A  A++      F    +K+  A+ K  + +   G   PRE R
Sbjct: 415 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGG-MPPREGR 463

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>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma|
           breakpoint region 1 protein)
          Length = 656

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKI----------IEV-LAFKTLKHKGQAWV 222
           N  IY+  LN+ + LD     L   F Q G +          I + L  +T K KG A V
Sbjct: 360 NSAIYVQGLNDSVTLD----DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 415

Query: 223 VFEDVASATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKR 372
            +ED  +A  A++      F    +K+  A+ K  + +   G   PRE R
Sbjct: 416 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGG-LPPREGR 464

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>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 266

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTL--KHKGQAWVVFEDVASATEA 255
           T+++ NL  K+  + L +    +F Q G +I+V   K    K K  A+V F+   S   A
Sbjct: 11  TLFVGNLETKVTEELLFE----LFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYA 66

Query: 256 LKRMQDFPFYDKPMKIQYAKTKS 324
           +  +     Y +P+KIQ+    S
Sbjct: 67  MNLLNGIKLYGRPIKIQFRSGSS 89

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>MDE7_SCHPO (O59784) RNA-binding protein mde7 (Mei4-dependent protein 7)|
          Length = 761

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATE 252
           P  TIY+ NL+   +    +K L   FS+  K    L FK   +    +V FE+V  A +
Sbjct: 600 PCNTIYVGNLSNPDQ----EKKLRLAFSK-EKGYRRLCFKIKGNSPMCFVEFEEVCHAAK 654

Query: 253 ALKRMQDFPFYDK---PMKIQYAK 315
           A+++MQ     DK    +++ Y+K
Sbjct: 655 AMEKMQGAALDDKIKGGIRLSYSK 678

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>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 21/89 (23%), Positives = 43/89 (48%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALK 261
           T++I NL +      L+     +F +FG+I+++   K       A++ + D+AS  +A+K
Sbjct: 440 TLFIGNLEKTTTYHDLRN----IFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIK 495

Query: 262 RMQDFPFYDKPMKIQYAKTKSDVVAKADG 348
           +M      +  +K+ + K+        DG
Sbjct: 496 KMDGEYLGNNRLKLGFGKSMPTNCVWLDG 524

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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 21/89 (23%), Positives = 43/89 (48%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALK 261
           T++I NL +      L+     +F +FG+I+++   K       A++ + D+AS  +A+K
Sbjct: 439 TLFIGNLEKTTTYHDLRN----IFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIK 494

Query: 262 RMQDFPFYDKPMKIQYAKTKSDVVAKADG 348
           +M      +  +K+ + K+        DG
Sbjct: 495 KMDGEYLGNNRLKLGFGKSMPTNCVWLDG 523

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>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKI----------IEVLAFK-TLKHKGQAWV 222
           N TI++  L E + ++    S+   F Q G I          I +   + T K KG+A V
Sbjct: 277 NNTIFVQGLGENVTIE----SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 332

Query: 223 VFEDVASATEALKRMQDFPFYDKPMKIQYAKTKSD 327
            F+D  SA  A+       F   P+K+ +A  ++D
Sbjct: 333 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 367

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>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKI----------IEVLAFK-TLKHKGQAWV 222
           N TI++  L E + ++    S+   F Q G I          I +   + T K KG+A V
Sbjct: 270 NNTIFVQGLGENVTIE----SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 325

Query: 223 VFEDVASATEALKRMQDFPFYDKPMKIQYAKTKSD 327
            F+D  SA  A+       F   P+K+ +A  ++D
Sbjct: 326 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 360

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>YE56_CAEEL (P90747) Probable cation-transporting ATPase C10C6.6 in chromosome IV|
            (EC 3.6.3.-)
          Length = 1178

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 358  PREKRKRNDEKPEKKQKREQHHDVNQAGVGMHAYPGAYGAPPLS-----QLPFGAGPKVM 522
            P +  K  +++ EKK K E+   + ++G  +   PGA GAPP +       P GA  +  
Sbjct: 843  PYDAEKAAEKEKEKKAKIEEARSLVRSGAQLPQRPGAPGAPPAANAARRDAPPGARARAP 902

Query: 523  MP 528
            +P
Sbjct: 903  LP 904

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>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKI----------IEVLAFK-TLKHKGQAWV 222
           N TI++  L E + ++    S+   F Q G I          I +   + T K KG+A V
Sbjct: 284 NNTIFVQGLGENVTIE----SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATV 339

Query: 223 VFEDVASATEALKRMQDFPFYDKPMKIQYAKTKSD 327
            F+D  SA  A+       F   P+K+ +A  ++D
Sbjct: 340 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 374

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>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 187 FKTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPMKIQYAK 315
           ++T KH+G A+V FE+V  A  A+  M +   + + +++  A+
Sbjct: 5   YQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVAR 47

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>PSD1_DROME (Q9V3P6) 26S proteasome non-ATPase regulatory subunit 1 (26S|
           proteasome regulatory subunit RPN2) (26S proteasome
           regulatory complex subunit p110)
          Length = 1020

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 310 AKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQ 417
           A  K D  AKAD   V  EK K+ DEK +KK++ ++
Sbjct: 879 AAVKKDEEAKADEKMVTDEKPKKKDEKEKKKEEDKE 914

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>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKH--KGQAWVVFEDVASATEAL 258
           +Y+ NL+  +  D L++     F++FGKI+ +   K      +G A+V F++   A  A 
Sbjct: 203 LYMKNLDADVSEDLLREK----FAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258

Query: 259 KRMQDFPFYDKPMKIQYAKTKSD 327
           + +    F  K + +  A+ K++
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAE 281

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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +1

Query: 271 DFPFYDKPMKI--QYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDVNQAGV 444
           ++P+Y+ P     + A T+  V A  + T VP E+ +   E P   +  +     +  G+
Sbjct: 274 EYPYYEDPEDPGKEPAPTQKPVEAARETTEVPEEQTQPLPEAPTVPETSDTADKEDSLGI 333

Query: 445 GMHAY--PGAYGAPPLSQLPFGAGPKVMMPE 531
           G + Y  P  Y  PP  +  FG G  V  P+
Sbjct: 334 GDYDYVPPDDYYTPPPYE-DFGYGEGVENPD 363

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>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 29/119 (24%)
 Frame = +1

Query: 148 VFSQFGKIIEVLAF---KTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPMKIQY--- 309
           VFSQ+G+I+ +      KT K KG  ++ +ED  S   A+          + +++ +   
Sbjct: 55  VFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSN 114

Query: 310 -----------------------AKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQ 417
                                  A+T S  ++++     P +K K+ D+K +KK+K+E+
Sbjct: 115 YRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKKHKK-DKKEKKKKKKEK 172

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>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core|
           protein C)
          Length = 282

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N  ++I NLN  +     K  + A+FS++GKI+         HKG A+V F +  +A  A
Sbjct: 16  NSRVFIGNLNTLV---VKKTDVEAIFSKYGKIVGCSV-----HKGFAFVQFSNERTARTA 67

Query: 256 L 258
           +
Sbjct: 68  V 68

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>CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C (AtCDC48c)|
          Length = 820

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 319 KSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHH 423
           + D +   +G+   R+K++R DEK EK Q+ EQ H
Sbjct: 78  EDDNIGDEEGSASQRKKQRRVDEKEEKLQRAEQSH 112

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
 Frame = +1

Query: 130 KKSLNAVFSQFGKIIEVLAFKTLKHKGQ----AWVVFEDVASATEALKRMQDFPFYDKPM 297
           ++ L   FS+ G + +V   K  K  G+    A++ ++   +A  A+K           +
Sbjct: 15  EEKLREFFSKQGDVTDVKLMK--KRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARI 72

Query: 298 KIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKR 411
           ++++AKT SD           +EKRKR ++K + +Q+R
Sbjct: 73  EVEFAKTFSDPTVPLSF----KEKRKREEQKLKDEQER 106

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>PHF14_MOUSE (Q9D4H9) PHD finger protein 14|
          Length = 881

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
 Frame = +1

Query: 286 DKPMKIQYAKTKSDVVAKADGTFVPREKR--KRNDEKP------EKKQKREQHHDVNQAG 441
           D  +K +  K  ++ +  +D   +  EK+  + N E+P      EK++++E+  D  +A 
Sbjct: 73  DIQVKEEQLKNSTEEIMPSDKQLIKMEKKEEEENGERPRKKKEKEKEKEKEREKDKEKAT 132

Query: 442 VGMHAYPGAYGAPPLSQLPFGAGPKV 519
           V   A   A G  P +  P    P V
Sbjct: 133 VSDSAAASAAGTTPATSPPAVTSPSV 158

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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEV-LAFKTLKHKGQAWVVFEDVA 240
           G Q    +Y+ NL +K+K    K  L   F+++GK+  V +AF      G A+V FE   
Sbjct: 2   GDQRGTRVYVGNLTDKVK----KDDLEGEFTKYGKLNSVWIAFNP---PGFAFVEFEHRD 54

Query: 241 SATEALKRMQDFPFYDKPMKIQYAK 315
            A +A   +         ++++ +K
Sbjct: 55  DAEKACDILNGSELLGSQLRVEISK 79

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>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +1

Query: 61  NGVQPNVT-IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQA--WVVFE 231
           +G  P+ T +Y+ NL ++I  D LKK+    F ++G I   +  K      ++  +V F 
Sbjct: 218 SGAVPSFTNVYVKNLPKEITDDELKKT----FGKYGDISSAVVMKDQSGNSRSFGFVNFV 273

Query: 232 DVASATEALKRMQDFPFYDKPMKIQYAKTKSD 327
              +A  A+++M      +  + +  A+ KSD
Sbjct: 274 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSD 305

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>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 494

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 133 KSLNAVFSQFGKIIE---VLAFKTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPMKI 303
           + L  +FS+FGKI+    +   KT      A++ FED  S  EA  +M      D+ + +
Sbjct: 267 EDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRIHV 326

Query: 304 QYAKTKS 324
            ++++ S
Sbjct: 327 DFSQSVS 333

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I I NL   + L+ L +    +FS+FG +++++ F T  ++ QA + + D  +
Sbjct: 148 GQSPVLRIIIENLFYPVTLEVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVN 202

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKS 324
           A  A   +     Y+    ++I ++K  S
Sbjct: 203 AQYAKMALDGQNIYNACCTLRIDFSKLTS 231

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I I NL   + L+ L +    +FS+FG +++++ F T  ++ QA + + D  +
Sbjct: 148 GQSPVLRIIIENLFYPVTLEVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVN 202

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKS 324
           A  A   +     Y+    ++I ++K  S
Sbjct: 203 AQYAKMALDGQNIYNACCTLRIDFSKLTS 231

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATE 252
           P + I I+N+   + LD L +    +FS+FG +++++ F T  ++ QA + + D  +A +
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQ----IFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQ 233

Query: 253 ALKRMQDFPFYDK--PMKIQYAK 315
           A   +     Y+    ++I ++K
Sbjct: 234 AKLALDGQNIYNACCTLRIDFSK 256

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATE 252
           P + I I+N+   + LD L +    +FS+FG +++++ F T  ++ QA + + D  +A +
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQ----IFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQ 233

Query: 253 ALKRMQDFPFYDK--PMKIQYAK 315
           A   +     Y+    ++I ++K
Sbjct: 234 AKLALDGQNIYNACCTLRIDFSK 256

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATE 252
           P + I I+N+   + LD L +    +FS+FG +++++ F T  ++ QA + + D  +A +
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQ----IFSKFGAVLKIITF-TKNNQFQALLQYGDPVNAQQ 233

Query: 253 ALKRMQDFPFYDK--PMKIQYAK 315
           A   +     Y+    ++I ++K
Sbjct: 234 AKLALDGQNIYNACCTLRIDFSK 256

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>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 265

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTL--KHKGQAWVVFEDVASATEA 255
           T+++ NL  K+  + L +    +F Q G +I+V   K    K K  A+V F+   S   A
Sbjct: 11  TLFVGNLETKVTEELLFE----LFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYA 66

Query: 256 LKRMQDFPFYDKPMKIQYAKTKS 324
           +  +     + +P+KIQ+    S
Sbjct: 67  MNLLNGIKLFGRPIKIQFRSGSS 89

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>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II|
          Length = 352

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/83 (24%), Positives = 38/83 (45%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N  +Y++ L E I    L+    + F  FG+I+      T  +     +VF     A +A
Sbjct: 175 NTAVYVHQLPENITTQELR----SYFLHFGEILY-----TQVNNNSGRIVFAQRYFAEQA 225

Query: 256 LKRMQDFPFYDKPMKIQYAKTKS 324
           +  M +FP +   +++ +A+  S
Sbjct: 226 INEMNNFPLHGVRIQLSWARPPS 248

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>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTL--KHKGQAWVVFEDVASATEA 255
           T+++ NL  K+  + L +    +F Q G +I+V   K    K K  A+V F+   S   A
Sbjct: 11  TLFVGNLETKVTEELLFE----LFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYA 66

Query: 256 LKRMQDFPFYDKPMKIQY 309
           +  +     + +P+KIQ+
Sbjct: 67  MNLLNGIKLFGRPIKIQF 84

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>HFLK_BUCBP (Q89A39) Protein hflK|
          Length = 417

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQF--GKIIEVLAFKTLKHKGQAWVVFEDVASAT 249
           N+ I++ N    +  + +K ++  +   +  G +I  + F+TL       + FED+ SA 
Sbjct: 191 NIDIFLKNEFSLLAKNDIKVNIQKIIKPYHMGIVISDINFRTLYLPQAVKLAFEDIFSAI 250

Query: 250 EALKR-MQDFPFYDKPMKIQ--YAKTKSDVVAKAD 345
           E+ K+ + +   Y   +K Q  Y   K  + AK+D
Sbjct: 251 ESKKQSLNEARIYSNEIKSQAFYNAKKILIEAKSD 285

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 64  GVQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVAS 243
           G  P + I I NL   + L+ L +    +FS+FG +++++ F T  ++ QA + + D  +
Sbjct: 146 GQSPVLRIIIENLFYPVTLEVLHQ----IFSKFGTVLKIITF-TKNNQFQALLQYADPVN 200

Query: 244 ATEALKRMQDFPFYDK--PMKIQYAKTKS 324
           A  A   +     Y+    ++I ++K  S
Sbjct: 201 AHYAKMALDGQNIYNACCTLRIDFSKLTS 229

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>ING1_MOUSE (Q9QXV3) Inhibitor of growth protein 1|
          Length = 279

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 313 KTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDV 429
           K+KS+ + +AD     R +R+RN+E  E       H D+
Sbjct: 133 KSKSEAITQADKPNNKRSRRQRNNENRENASNNHDHDDI 171

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>DHH1_YARLI (Q6C0X2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 522

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
 Frame = +1

Query: 355 VPREKR-KRNDE-KPEKKQKREQHHD-VNQAGVGM-------HAYPG-AYGAPPLSQLPF 501
           +PR K  KRN++ +P++ Q ++Q  D  NQ  +G           PG  YG PP    P 
Sbjct: 417 MPRGKESKRNEQFQPQQNQNQQQQQDGQNQHSLGPVPPQGPPQGIPGPGYGYPPPQGFPQ 476

Query: 502 GAGPKVMMPE 531
           G  P+ M P+
Sbjct: 477 GMPPQGMPPQ 486

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>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 605

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
 Frame = +1

Query: 133 KSLNAVFSQFGKIIEVLAFKTLKHKGQ---AWVVFEDVASATEALKRMQDFPFYDKPMKI 303
           + L  +F +FGKI+     +  K       A++ +ED AS   A  +MQ     D+ + +
Sbjct: 265 EDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIHV 324

Query: 304 QYAKTKSDV--VAKADGTFVPREKRKRNDEK-----PEKKQKREQHHDVNQAGVGMHAYP 462
            ++++ S +  V + D       KR+ N  +      ++ +KR Q+ D  +   G + Y 
Sbjct: 325 DFSQSVSKLSDVWRKD----TNSKRRTNAGRGGWGGVDELEKRRQYRDEGERVTGGN-YR 379

Query: 463 GAYG 474
             YG
Sbjct: 380 MVYG 383

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>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 30/127 (23%)
 Frame = +1

Query: 148 VFSQFGKIIEVLAF---KTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPMKIQYAKT 318
           VFSQ+G+I+ +      KT K KG  ++ +ED  S   A+          + +++ +   
Sbjct: 55  VFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSN 114

Query: 319 KSDVVAKADGTFVPRE---------------------------KRKRNDEKPEKKQKREQ 417
                   D   V RE                           K+ + D+K +KK+K+E+
Sbjct: 115 YRAPQESEDVDDVTRELQEKGCGVKTPPSSPPEVSEDEDAKLTKKHKKDKKEKKKRKKEK 174

Query: 418 HHDVNQA 438
                QA
Sbjct: 175 TEGQAQA 181

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>LYAR_RAT (Q6AYK5) Cell growth-regulating nucleolar protein|
          Length = 386

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +1

Query: 211 QAWVVFEDVASATEALKRMQDF--PFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRND 384
           Q W +F + AS+ +  +       P  + P K+   KT      + +     RE RK   
Sbjct: 132 QVWNIFSEAASSEQDQQPPSHMAKPNTEVPTKVPSTKTNGTTEEQTEAKKNKRE-RKEER 190

Query: 385 EKPEKKQKRE---QHHDVNQAG 441
           +K  KK+K+E   ++H  N  G
Sbjct: 191 QKSRKKEKKELKLENHQENLKG 212

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>RLA0_PYRAB (Q9UXS5) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 341

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 292 PMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDVNQAGVGMHAYPG 465
           P ++   KTK  + A+A     P+E  +   E+ EKK++ E+     +A  G+ A  G
Sbjct: 284 PDELLDEKTKELLSAQAQVAVAPQEVEEEKKEEEEKKEEEEEEASEEEALAGLSALFG 341

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>IF39_RAT (Q4G061) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta)
          Length = 797

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 115 KLDALKKSLNAVFSQFGKII-EVLAFKTLKHKGQAWVVFEDVASATEALKRMQDF 276
           +L+ LK  ++ +FS+FGKII +    +  K KG  ++ +   A A +A+K    +
Sbjct: 182 RLEKLKNVIHKIFSKFGKIINDYYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 236

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>IF39_MOUSE (Q8JZQ9) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p116)
          Length = 803

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 115 KLDALKKSLNAVFSQFGKII-EVLAFKTLKHKGQAWVVFEDVASATEALKRMQDF 276
           +L+ LK  ++ +FS+FGKII +    +  K KG  ++ +   A A +A+K    +
Sbjct: 188 RLEKLKNVIHKIFSKFGKIINDYYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 242

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>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /|
           hnRNP C2)
          Length = 306

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N  ++I NLN  +     K  + A+FS++GKI+         HKG A+V + +  +A  A
Sbjct: 15  NSRVFIGNLNTLV---VKKSDVEAIFSKYGKIVGCSV-----HKGFAFVQYVNERNARAA 66

Query: 256 L 258
           +
Sbjct: 67  V 67

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>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /|
           hnRNP C2)
          Length = 313

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N  ++I NLN  +     K  + A+FS++GKI+         HKG A+V + +  +A  A
Sbjct: 15  NSRVFIGNLNTLV---VKKSDVEAIFSKYGKIVGCSV-----HKGFAFVQYVNERNARAA 66

Query: 256 L 258
           +
Sbjct: 67  V 67

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>CALB_CAUCR (Q9A777) Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68)|
           (CALDH)
          Length = 485

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 225 HDPCLPFMLQSLKSKHLNDFPKLGENRIEGLLKCVEFDLLV 103
           H   +  +LQ  K+ HL D P   E RI+ L +C+  DLLV
Sbjct: 12  HKAVMNDVLQRQKAAHLRDGPPSAEKRIQWLNRCI--DLLV 50

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>YCF2_ADICA (Q85B60) Protein ycf2|
          Length = 2104

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 298  SWVCHRRGNLASSSKPRLLMQHLRTRPMLALYASKS 191
            SW+  R  +    S   LL QHL T  +L  YASKS
Sbjct: 1265 SWIFRRESSDILDSNKELLTQHLVTTKILYRYASKS 1300

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>CYP40_ARATH (Q9C566) Peptidyl-prolyl cis-trans isomerase CYP40 (EC 5.2.1.8)|
           (PPIase CYP40) (Rotamase CYP40) (Cyclophilin-40)
           (Cyclophilin of 40 kDa) (Protein SQUINT)
          Length = 361

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALKR 264
           I+ N+   K+K    K +L  + ++F    E    K L  +GQA++   +V +A E+L++
Sbjct: 266 IFTNSAACKLKFGDAKGAL--LDTEFAMRDEDNNVKALFRQGQAYMALNNVDAAAESLEK 323

Query: 265 MQDFPFYDKPMKIQYA 312
              F   D  +K +YA
Sbjct: 324 ALQFEPNDAGIKKEYA 339

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>CP17A_PAPHU (Q9GLD2) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)|
           (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase)
          Length = 508

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 475 APPLSQLPFGAGPKVMMPEIIVPNNILFV 561
           +P LS LPFGAGP+  + EI+    +  +
Sbjct: 427 SPSLSYLPFGAGPRSCIGEILARQELFLI 455

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>CP17A_PAPCY (Q8HYN0) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)|
           (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase)
          Length = 508

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 475 APPLSQLPFGAGPKVMMPEIIVPNNILFV 561
           +P LS LPFGAGP+  + EI+    +  +
Sbjct: 427 SPSLSYLPFGAGPRSCIGEILARQELFLI 455

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>CP17A_MACMU (Q8HYM9) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)|
           (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase)
          Length = 508

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 475 APPLSQLPFGAGPKVMMPEIIVPNNILFV 561
           +P LS LPFGAGP+  + EI+    +  +
Sbjct: 427 SPSLSYLPFGAGPRSCIGEILARQELFLI 455

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>CP17A_MACFA (Q2XVA1) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)|
           (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase)
          Length = 508

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 475 APPLSQLPFGAGPKVMMPEIIVPNNILFV 561
           +P LS LPFGAGP+  + EI+    +  +
Sbjct: 427 SPSLSYLPFGAGPRSCIGEILARQELFLI 455

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>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)|
           (PPIase cyp6) (Rotamase cyp8)
          Length = 432

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = +1

Query: 133 KSLNAVFSQFGKIIEVLAFKTLKHKGQ----AWVVFEDVASATEALKRMQDFPFYDKPMK 300
           + L  +FS+FGKII     +  K  G     A++ F++  S  +A  +MQ+    D  + 
Sbjct: 258 EDLELIFSRFGKIISCQVIRD-KETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIH 316

Query: 301 IQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQ 405
           + ++++    VA+    +     RKR+  + + ++
Sbjct: 317 VDFSQS----VARYRQYYNSNRDRKRSSSRSDDRE 347

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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 133 KSLNAVFSQFGKIIEVLAF---KTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPMKI 303
           + L  +F  FG ++    F   +T   K   +V +++  SA  A++ M  F    K +K+
Sbjct: 415 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 474

Query: 304 QYAKTKSD 327
           Q  ++K+D
Sbjct: 475 QLKRSKND 482

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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 133 KSLNAVFSQFGKIIEVLAF---KTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPMKI 303
           + L  +F  FG ++    F   +T   K   +V +++  SA  A++ M  F    K +K+
Sbjct: 415 QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 474

Query: 304 QYAKTKSD 327
           Q  ++K+D
Sbjct: 475 QLKRSKND 482

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>PRT1_PICAN (P12806) Putative PRT1 protein|
          Length = 220

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 115 KLDALKKSLNAVFSQFGKIIEV-LAFKTLKHKGQAWVVFEDVASATEALKRM 267
           K   LKK L  +FSQ GK++++ +  +  + KG   +  +  A+A +A+K++
Sbjct: 51  KAPVLKKVLTKLFSQCGKVVDMFMPLENGQTKGFLIIELDSAAAADKAVKQL 102

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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 20/81 (24%)
 Frame = +1

Query: 82  TIYINNLNEKIKLDALKKSLNAVFSQFGKIIEV----------------LAFKTLKHKGQ 213
           T+++ NL     +   KK L + F ++G+I  V                 A K   H  Q
Sbjct: 186 TVFVGNL----PVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQ 241

Query: 214 ----AWVVFEDVASATEALKR 264
               A+VVF++ ++AT+ALKR
Sbjct: 242 KNINAYVVFKEESAATQALKR 262

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>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 298 KIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDVNQ 435
           K + A+ +S    KA+G    +EK+K  D+K ++K+K   + D N+
Sbjct: 110 KSKKAENRSRSKEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNK 155

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>CP17A_PERLE (Q91Z85) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)|
           (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase)
          Length = 509

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 478 PPLSQLPFGAGPKVMMPEIIVPNNILFV 561
           P LS LPFGAGP+  + E++    +LF+
Sbjct: 426 PSLSYLPFGAGPRACIGEVLA-RQVLFL 452

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>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +1

Query: 130 KKSLNAVFSQFGKIIE---VLAFKTLKHKGQAWVVFEDVASATEALKRMQDFPFYDKPMK 300
           ++SL   FSQFG++++   +   +T + +G  +V F+D  S  +A++ M       + + 
Sbjct: 21  ERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSIT 80

Query: 301 IQYAKTK 321
           +  A+++
Sbjct: 81  VNEAQSR 87

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>MURE_BACTN (Q8A254) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 482

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +1

Query: 121 DALKKSLNAVFSQF---GKIIEVLAFKTLKHKGQAWVVFEDVASATEALKRMQDFPFYDK 291
           DAL   LNA+       GK+I V+     + KG+  ++ ++ A A++ +    D P +++
Sbjct: 349 DALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEE 408

Query: 292 PMKI 303
           P +I
Sbjct: 409 PQEI 412

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>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP|
           core protein C-like 1)
          Length = 293

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEA 255
           N  ++I NLN  +     K  + A+FS++GKI          HKG A+V ++   +A  A
Sbjct: 15  NSRVFIGNLNTLV---VKKSDVEAIFSKYGKIAGCSV-----HKGFAFVQYDKEKNARAA 66

Query: 256 L 258
           +
Sbjct: 67  V 67

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>RAD52_MOUSE (P43352) DNA repair protein RAD52 homolog|
          Length = 420

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
 Frame = +1

Query: 277 PFYDKPMKIQYAKTKSD-----VVAKADGTFVPREKRKRNDEKP----EKKQKREQHHDV 429
           P +D  +K+Q AK  S         ++D T   + ++ R  +      E+ + R Q H  
Sbjct: 231 PPHDSNIKLQGAKDISSSCSLAATLESDATHQRKLRKLRQKQLQQQFREQMETRRQSHAP 290

Query: 430 NQAGVGMHAYPGAYGAPPLSQLPFGAGPKVMMPEIIVPNNI 552
            +     HA      APP    P  A  +++  +++ P+N+
Sbjct: 291 AEEVAAKHA--AVLPAPPKHSTPVTAASELLQEKVVFPDNL 329

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>RW1_HUMAN (Q92545) RW1 protein (Fragment)|
          Length = 1805

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +1

Query: 232  DVASATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKR 411
            D+ S  EA+ +  DF  +D P    + +     + K+ G   P +++ +  +K E+K+K+
Sbjct: 1268 DITSLIEAMDK--DFDHHDSPALEVFTEQPPSPLPKSKGKGKPLQRKVKPPKKQEEKEKK 1325

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>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 984

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
 Frame = +1

Query: 91  INNLNEKIKLDAL--KKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEALKR 264
           + N N ++K + L  K+ L    S   KI        L+ +       ED       +K+
Sbjct: 483 LQNHNHQLKGEVLRYKRKLREAQSDLSKIRSRSGSALLQSQSST----EDTKEEPPEIKQ 538

Query: 265 MQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQ 417
             D P          ++  S+V A+ D     RE+R+R  E+ ++K+K  +
Sbjct: 539 EPDDPSSQVSAPRAASEEASEVKARRDEEERERERREREREREKEKEKERE 589

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 20/87 (22%), Positives = 39/87 (44%)
 Frame = +1

Query: 79  VTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATEAL 258
           V I++ NL+     + ++    ++FSQ+GKI E    K        +V  +  + A EA+
Sbjct: 2   VKIFVGNLSPNTTAEEIR----SLFSQYGKISECDIVKNF-----GFVHMDSKSEADEAI 52

Query: 259 KRMQDFPFYDKPMKIQYAKTKSDVVAK 339
           + +  +      M ++ +K K     K
Sbjct: 53  QNLHHYMLNGMAMNVEMSKGKPKTSTK 79

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>CLH_DICDI (P25870) Clathrin heavy chain|
          Length = 1694

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +1

Query: 283  YDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDVNQAGVGMHAYP 462
            Y  P  IQY K  +  V +    F  R+K+   +++ +  +  +   D+     G  A  
Sbjct: 1595 YSFPYLIQYVKEYTTKVDQLVDDFKARQKKTEEEKEQQNIESSQYQPDLTNLSYGYAATG 1654

Query: 463  GAYGAPP 483
            G    PP
Sbjct: 1655 GMLALPP 1661

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>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell wall protein|
           1)
          Length = 561

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASATE 252
           P  TIY+ NL      + LK   +   +Q G   + L F+T  +    +V FE++  A E
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFS---TQVG--YKRLCFRTKGNGPMCFVEFENIPYAME 478

Query: 253 ALKRMQ 270
           ALK +Q
Sbjct: 479 ALKNLQ 484

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>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding|
           protein 56) (TAFII68) (TAF(II)68)
          Length = 592

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
 Frame = +1

Query: 76  NVTIYINNLNEKIKLDALKKSLNAVFSQFGKI----------IEVLAFK-TLKHKGQAWV 222
           N TI++  L E +  D     +   F Q G I          I +   K T K KG+A V
Sbjct: 233 NNTIFVQGLGEGVSTD----QVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATV 288

Query: 223 VFEDVASATEALKRMQDFPFYDKPMKIQYAKTKSD 327
            F+D  SA  A+       F+   +K+ +A  + +
Sbjct: 289 SFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPE 323

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>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
 Frame = +1

Query: 73  PNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQ---AWVVFEDVAS 243
           P   +++  LN   + D     L  +FS+FGKI+     K  K       A++ F+    
Sbjct: 260 PENILFVCKLNPVTRSD----DLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDD 315

Query: 244 ATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKP 393
           A  A  +MQ+    D+ + + ++++    V++  G +V  +KR    + P
Sbjct: 316 AERAYFKMQNVLVDDRRIWVDFSQS----VSRLHGDWV--KKRNAGSDAP 359

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>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 3/146 (2%)
 Frame = +1

Query: 85  IYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAF---KTLKHKGQAWVVFEDVASATEA 255
           I++  L+    ++ +K+     F QFGK+ + +      T +H+G  +V FE    + + 
Sbjct: 111 IFVGGLSVNTTVEDVKQ----YFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE----SEDI 162

Query: 256 LKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHDVNQ 435
           ++++ +  F++   K+   K              P+E          + +      D   
Sbjct: 163 VEKVCEIHFHEINNKMVECKKAQ-----------PKEVMSPTGSARGRSRVMPYGMDAFM 211

Query: 436 AGVGMHAYPGAYGAPPLSQLPFGAGP 513
            G+GM  YPG       S+   G  P
Sbjct: 212 LGIGMLGYPGFQATTYASRSYTGLAP 237

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>GBP2_HUMAN (P32456) Interferon-induced guanylate-binding protein 2|
           (GTP-binding protein 2) (Guanine nucleotide-binding
           protein 2) (HuGBP-2)
          Length = 591

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +1

Query: 229 EDVASATEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQK 408
           EDVA A   L+  Q     +K ++++  K +S   AK     +  E +K+N+E  E+K+K
Sbjct: 467 EDVADAL--LQTDQSLSEKEKAIEVERIKAESAEAAKK----MLEEIQKKNEEMMEQKEK 520

Query: 409 REQHH 423
             Q H
Sbjct: 521 SYQEH 525

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>POPB_RALSO (Q9RBS1) Protein popB|
          Length = 174

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
 Frame = +1

Query: 367 KRKRNDEKP--------EKKQKREQHHDVNQAGVGMHAYPGAYGAP 480
           KRKR+DE          +KK+KR+  +D +QAG G  +  G+ G+P
Sbjct: 96  KRKRDDETDPNAETEGGKKKKKRDDENDSSQAG-GAGSSAGSSGSP 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,315,706
Number of Sequences: 219361
Number of extensions: 1327210
Number of successful extensions: 5948
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 5471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5892
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result