ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal28m19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185268.1| Oryza sativa (japonica cultivar-group), predic... 440 e-120
2dbj|AK102716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 432 e-118
3gb|AY111018.1| Zea mays CL6482_1 mRNA sequence 307 2e-80
4gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome... 149 1e-32
5gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome... 149 1e-32
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
7emb|Z49990.1|STU1A S.tuberosum mRNA for U1snRNP-specific protein... 80 9e-12
8ref|XM_547687.2| PREDICTED: Canis familiaris similar to U1 small... 58 3e-05
9ref|XM_845070.1| PREDICTED: Canis familiaris similar to U1 small... 58 3e-05
10ref|XM_855704.1| PREDICTED: Canis familiaris similar to U1 small... 58 3e-05
11emb|BX065687.1|CNS09MUJ Single read from an extremity of a full-... 54 5e-04
12emb|BX056096.1|CNS09FG4 Single read from an extremity of a full-... 54 5e-04
13emb|BX048470.1|CNS099KA Single read from an extremity of a full-... 54 5e-04
14emb|BX048469.1|CNS099K9 Single read from an extremity of a full-... 54 5e-04
15emb|BX047351.1|CNS098P7 Single read from an extremity of a full-... 54 5e-04
16emb|BX047350.1|CNS098P6 Single read from an extremity of a full-... 54 5e-04
17emb|BX046052.1|CNS097P4 Single read from an extremity of a full-... 54 5e-04
18emb|BX046051.1|CNS097P3 Single read from an extremity of a full-... 54 5e-04
19emb|BX041238.1|CNS093ZE Single read from an extremity of a full-... 54 5e-04
20emb|BX041237.1|CNS093ZD Single read from an extremity of a full-... 54 5e-04
21emb|BX041154.1|CNS093X2 Single read from an extremity of a full-... 54 5e-04
22ref|XM_320869.2| Anopheles gambiae str. PEST ENSANGP00000019197 ... 54 5e-04
23ref|XM_784141.1| PREDICTED: Strongylocentrotus purpuratus simila... 50 0.008
24gb|BT019068.1| Zea mays clone Contig631.F mRNA sequence 48 0.031
25gb|BC044979.1| Xenopus laevis sans fille, mRNA (cDNA clone MGC:5... 48 0.031
26emb|X57953.1|XLU1AA X.laevis U1 A mRNA 48 0.031
27gb|AF549988.1| Xenopus laevis clone S10-50-D6 mRNA sequence 48 0.031
28gb|AY103846.1| Zea mays PCO130752 mRNA sequence 48 0.031
29gb|AC154510.2| Mus musculus BAC clone RP23-210I20 from chromosom... 46 0.12
30gb|U55857.1| Caenorhabditis elegans cosmid K08D10, complete sequ... 46 0.12
31ref|NM_068103.2| Caenorhabditis elegans RNP (RRM RNA binding dom... 46 0.12
32emb|CT573016.5| Mouse DNA sequence from clone RP23-78E16 on chro... 46 0.12
33ref|XM_845294.1| PREDICTED: Canis familiaris similar to small nu... 44 0.49
34ref|XM_533663.2| PREDICTED: Canis familiaris similar to U1 small... 44 0.49
35gb|AC105277.2| Homo sapiens chromosome 1 clone RP4-794H19, compl... 44 0.49
36gb|BT019360.1| Synthetic construct Homo sapiens Down syndrome cr... 42 1.9
37gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
38ref|XM_880176.1| PREDICTED: Bos taurus similar to U1 small nucle... 42 1.9
39ref|XM_880255.1| PREDICTED: Bos taurus similar to U1 small nucle... 42 1.9
40ref|XM_586842.2| PREDICTED: Bos taurus similar to U1 small nucle... 42 1.9
41ref|XM_880198.1| PREDICTED: Bos taurus similar to U1 small nucle... 42 1.9
42ref|XM_753705.1| Ustilago maydis 521 hypothetical protein (UM026... 42 1.9
43gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome... 42 1.9
44gb|BC112544.1| Bos taurus similar to U1 small nuclear ribonucleo... 42 1.9
45emb|AL357507.9| Human DNA sequence from clone RP11-694J20 on chr... 42 1.9
46dbj|AK126461.1| Homo sapiens cDNA FLJ44497 fis, clone UTERU3000226 42 1.9
47ref|NM_006052.1| Homo sapiens Down syndrome critical region gene... 42 1.9
48gb|AC079630.18| Homo sapiens 12 BAC RP11-476D10 (Roswell Park Ca... 42 1.9
49gb|AC007784.7| Homo sapiens 12p13 BAC RPCI11-1092P21 (Roswell Pa... 42 1.9
50gb|AC108081.2| Homo sapiens chromosome 16 clone CTC-661I16, comp... 42 1.9
51dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
52gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete... 42 1.9
53gb|AC157826.2| Pan troglodytes BAC clone CH251-276A2 from chromo... 42 1.9
54emb|BX648191.1|HSM808339 Homo sapiens mRNA; cDNA DKFZp686N0127 (... 42 1.9
55gb|AY890984.1| Synthetic construct Homo sapiens clone FLH020742.... 42 1.9
56emb|AJ001867.1|HS001867 Homo Sapiens mRNA, partial cDNA sequence... 42 1.9
57gb|AC163763.3| Pan troglodytes BAC clone CH251-180G5 from chromo... 42 1.9
58dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.9
59dbj|AP001432.2| Homo sapiens genomic DNA, chromosome 21q, clone:... 42 1.9
60gb|BC110655.1| Homo sapiens Down syndrome critical region gene 3... 42 1.9
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
62dbj|AP000151.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 42 1.9
63dbj|AP000010.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 42 1.9
64dbj|D87343.1| Homo sapiens mRNA for DCRA, complete cds 42 1.9
65gb|AC152563.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.6
66ref|XM_514668.1| PREDICTED: Pan troglodytes LOC458273 (LOC458273... 40 7.6
67gb|AY542999.1| Bigelowiella natans small nuclear ribonucleoprote... 40 7.6
68ref|XM_001006374.1| PREDICTED: Mus musculus similar to small nuc... 40 7.6
69ref|XM_001006366.1| PREDICTED: Mus musculus similar to small nuc... 40 7.6
70ref|XM_990056.1| PREDICTED: Mus musculus similar to small nuclea... 40 7.6
71gb|AC110253.10| Mus musculus chromosome 5, clone RP23-270N2, com... 40 7.6
72gb|AC073055.8| Homo sapiens BAC clone RP11-111J8 from 7, complet... 40 7.6
73gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, co... 40 7.6
74emb|AL441989.13| Human DNA sequence from clone RP11-360A18 on ch... 40 7.6
75gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 7.6
76ref|XM_963178.1| PREDICTED: Tribolium castaneum similar to U1 sm... 40 7.6
77ref|XM_780455.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.6
78gb|AC117602.9| Mus musculus chromosome 5, clone RP23-462C22, com... 40 7.6
79gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 40 7.6
80gb|AC016304.8| Homo sapiens, clone RP11-25H11, complete sequence 40 7.6
81gb|AC068875.5| Homo sapiens chromosome 15, clone RP11-720L8, com... 40 7.6
82gb|AF292561.1|AF292561 Strongyloides stercoralis G protein alpha... 40 7.6
83gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete se... 40 7.6
84gb|AC152455.1| Pan troglodytes BAC clone RP43-4I15 from chromoso... 40 7.6
85gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell P... 40 7.6
86gb|AC078809.9| Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cance... 40 7.6
87emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chr... 40 7.6 
>ref|NM_185268.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 762

 Score =  440 bits (222), Expect = e-120
 Identities = 438/510 (85%)
 Strand = Plus / Plus

                                                                       
Query: 54  ggaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagat 113
           ||||| |||||||| ||  || ||||| |||||||||||||| |||||||||||||||||
Sbjct: 42  ggaggagaacggcgcccctccgaacgtcaccatctacatcaacaacctcaacgagaagat 101

                                                                       
Query: 114 caaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcat 173
           ||| ||||| | ||||||||| || |||   || |||||||||||||||||||| ||  |
Sbjct: 102 caagctcgaggaacttaagaaatcgctccgcgctgttttctcccagtttgggaagattct 161

                                                                       
Query: 174 tgaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaaga 233
           ||| || || ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 162 tgatgttctcgctttcaagactttgaagcataaaggccaagcctgggttgtgtttgaaga 221

                                                                       
Query: 234 tgttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaacc 293
           |||||| |||||||| |||||||||||||| |||||||| ||||||||| || | |||||
Sbjct: 222 tgttgcttcagcaactgaggctttgaagagcatgcaagacttccccttccataataaacc 281

                                                                       
Query: 294 catgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcacctt 353
            |||| ||| ||||||||||||||||| || ||| || ||||||||||||||||||||||
Sbjct: 282 tatgagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctt 341

                                                                       
Query: 354 cgtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtga 413
            ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 342 tgtacctcgagaaagaaggaagaggaacgatgagaaacctgaaaagaagcagaagcgtga 401

                                                                       
Query: 414 gcagcaccacgatgttaaccaggctggcgtgggcatgcatgcctatcctggtgcttatgg 473
           ||||||||| ||||| |  || | |||| | ||  || |||| || || |||| ||||||
Sbjct: 402 gcagcaccatgatgtgagtcaagttggcttaggtgtgaatgcttaccccggtgtttatgg 461

                                                                       
Query: 474 ggctccgccgctctctcagctaccttttggtgcgggaccgaaggtcatgatgccagagat 533
            ||||| |||||||||||||||||||||| ||  | || ||||||||||||||| |||||
Sbjct: 462 agctcctccgctctctcagctaccttttgctggcgcacagaaggtcatgatgccggagat 521

                                         
Query: 534 tattgtaccaaacaatattctcttcgtcca 563
            |||||||| || || || |||||||||||
Sbjct: 522 aattgtaccgaataacatcctcttcgtcca 551
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>dbj|AK102716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105D18, full
           insert sequence
          Length = 923

 Score =  432 bits (218), Expect = e-118
 Identities = 437/510 (85%)
 Strand = Plus / Plus

                                                                       
Query: 54  ggaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagat 113
           ||||| |||||||| ||  || ||||| |||||||||||||| |||||||||||||||||
Sbjct: 91  ggaggagaacggcgcccctccgaacgtcaccatctacatcaacaacctcaacgagaagat 150

                                                                       
Query: 114 caaactcgacgcacttaagaagtccctcaatgcggttttctcccagtttgggaaaatcat 173
           ||| ||||| | ||||||||| || |||   || |||||||||||||||||||| ||  |
Sbjct: 151 caagctcgaggaacttaagaaatcgctccgcgctgttttctcccagtttgggaagattct 210

                                                                       
Query: 174 tgaggtgcttgcttttaagactttgaagcataaagggcaagcatgggtcgtgttcgaaga 233
           ||| || || ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 211 tgatgttctcgctttcaagactttgaagcataaaggccaagcctgggttgtgtttgaaga 270

                                                                       
Query: 234 tgttgcatcagcaaccgaggctttgaagaggatgcaagatttccccttctatgacaaacc 293
           |||||| |||||||| |||||||||||||| |||||||| ||||||||| || | |||||
Sbjct: 271 tgttgcttcagcaactgaggctttgaagagcatgcaagacttccccttccataataaacc 330

                                                                       
Query: 294 catgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaagctgatggcacctt 353
            |||| ||| ||||||||||||||||| || ||| || ||||||||||||||||||||||
Sbjct: 331 tatgagaatccaatatgccaagaccaaatcggatattatagcaaaagctgatggcacctt 390

                                                                       
Query: 354 cgtacctcgagaaaaaaggaagaggaatgatgagaaacctgaaaagaagcagaagcgtga 413
            ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 391 tgtacctcgagaaagaaggaagaggaacgatgagaaacctggaaagaagcagaagcgtga 450

                                                                       
Query: 414 gcagcaccacgatgttaaccaggctggcgtgggcatgcatgcctatcctggtgcttatgg 473
           ||||||||| ||||| |  || | |||| | ||  || |||| || || |||| ||||||
Sbjct: 451 gcagcaccatgatgtgagtcaagttggcttaggtgtgaatgcttaccccggtgtttatgg 510

                                                                       
Query: 474 ggctccgccgctctctcagctaccttttggtgcgggaccgaaggtcatgatgccagagat 533
            ||||| |||||||||||||||||||||| ||  | || ||||||||||||||| |||||
Sbjct: 511 agctcctccgctctctcagctaccttttgctggcgcacagaaggtcatgatgccggagat 570

                                         
Query: 534 tattgtaccaaacaatattctcttcgtcca 563
            |||||||| || || || |||||||||||
Sbjct: 571 aattgtaccgaataacatcctcttcgtcca 600
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>gb|AY111018.1| Zea mays CL6482_1 mRNA sequence
          Length = 1143

 Score =  307 bits (155), Expect = 2e-80
 Identities = 300/352 (85%)
 Strand = Plus / Plus

                                                                       
Query: 76  aacgtgaccatctacatcaataacctcaacgagaagatcaaactcgacgcacttaagaag 135
           ||||| |||||||| ||||| |||||||||||||||||||| ||||| | ||||||||||
Sbjct: 122 aacgtcaccatctatatcaacaacctcaacgagaagatcaagctcgaagaacttaagaag 181

                                                                       
Query: 136 tccctcaatgcggttttctcccagtttgggaaaatcattgaggtgcttgcttttaagact 195
           ||||| |  || |      ||||||||||||||||  |||| ||||||||||| ||||||
Sbjct: 182 tccctaacagccgnnnnnncccagtttgggaaaattcttgatgtgcttgctttcaagact 241

                                                                       
Query: 196 ttgaagcataaagggcaagcatgggtcgtgttcgaagatgttgcatcagcaaccgaggct 255
           |||||||||||||| ||||| ||||| || ||||||||||| |||||||| || ||||||
Sbjct: 242 ttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatcagctactgaggct 301

                                                                       
Query: 256 ttgaagaggatgcaagatttccccttctatgacaaacccatgaaaattcaatatgccaag 315
            ||||||||||||| |  || ||||||||||||||| | |||| ||||||||||||||||
Sbjct: 302 ctgaagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgccaag 361

                                                                       
Query: 316 accaagtcagatgttgtagcaaaagctgatggcaccttcgtacctcgagaaaaaaggaag 375
           ||||| |||||| || ||||||| |||||||||||||| ||||||||||||| ||| |||
Sbjct: 362 accaaatcagatattatagcaaaggctgatggcacctttgtacctcgagaaagaagaaag 421

                                                               
Query: 376 aggaatgatgagaaacctgaaaagaagcagaagcgtgagcagcaccacgatg 427
           |||| |||||      ||||||||||||||||||| ||||| ||||| ||||
Sbjct: 422 aggactgatgnnnnntctgaaaagaagcagaagcgcgagcatcaccatgatg 473



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 516 ggtcatgatgccagagattattgtaccaaacaa 548
           ||||||||||||||||||||| |||||||||||
Sbjct: 568 ggtcatgatgccagagattatcgtaccaaacaa 600
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>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05,
             complete sequence
          Length = 145044

 Score =  149 bits (75), Expect = 1e-32
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                         
Query: 148   gttttctcccagtttgggaaaatcattgaggtgcttgcttttaagactttgaagcataaa 207
             |||||||||||||||||||| ||  |||| || || ||||| ||||||||||||||||||
Sbjct: 28712 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 28771

                                                                         
Query: 208   gggcaagcatgggtcgtgttcgaagatgttgcatcagcaaccgaggctttgaagaggatg 267
             || ||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 28772 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 28831

                            
Query: 268   caagatttccccttc 282
             ||||| |||||||||
Sbjct: 28832 caagacttccccttc 28846



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                         
Query: 304   caatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttcgtacctcga 363
             ||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||
Sbjct: 29189 caatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcga 29248

                                         
Query: 364   gaaaaaaggaagaggaatgatgagaaac 391
             |||| |||||||||||| ||||||||||
Sbjct: 29249 gaaagaaggaagaggaacgatgagaaac 29276



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                         
Query: 483   gctctctcagctaccttttggtgcgggaccgaaggtcatgatgccagagattattgtacc 542
             |||||||||||||||||||| ||  | || ||||||||||||||| ||||| ||||||||
Sbjct: 30862 gctctctcagctaccttttgctggcgcacagaaggtcatgatgccggagataattgtacc 30921

                                  
Query: 543   aaacaatattctcttcgtcca 563
              || || || |||||||||||
Sbjct: 30922 gaataacatcctcttcgtcca 30942



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                         
Query: 54    ggaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagat 113
             ||||| |||||||| ||  || ||||| |||||||||||||| |||||||||||||||||
Sbjct: 28078 ggaggagaacggcgcccctccgaacgtcaccatctacatcaacaacctcaacgagaagat 28137

                      
Query: 114   caaactcga 122
             ||| |||||
Sbjct: 28138 caagctcga 28146



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                  
Query: 392   ctgaaaagaagcagaagcgtgagcagcaccacgatgt 428
             ||||||||||||||||||||||||||||||| |||||
Sbjct: 30070 ctgaaaagaagcagaagcgtgagcagcaccatgatgt 30106
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>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01,
              complete sequence
          Length = 141661

 Score =  149 bits (75), Expect = 1e-32
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                          
Query: 148    gttttctcccagtttgggaaaatcattgaggtgcttgcttttaagactttgaagcataaa 207
              |||||||||||||||||||| ||  |||| || || ||||| ||||||||||||||||||
Sbjct: 138239 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 138298

                                                                          
Query: 208    gggcaagcatgggtcgtgttcgaagatgttgcatcagcaaccgaggctttgaagaggatg 267
              || ||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 138299 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 138358

                             
Query: 268    caagatttccccttc 282
              ||||| |||||||||
Sbjct: 138359 caagacttccccttc 138373



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                          
Query: 304    caatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttcgtacctcga 363
              ||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||
Sbjct: 138716 caatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcga 138775

                                          
Query: 364    gaaaaaaggaagaggaatgatgagaaac 391
              |||| |||||||||||| ||||||||||
Sbjct: 138776 gaaagaaggaagaggaacgatgagaaac 138803



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                          
Query: 483    gctctctcagctaccttttggtgcgggaccgaaggtcatgatgccagagattattgtacc 542
              |||||||||||||||||||| ||  | || ||||||||||||||| ||||| ||||||||
Sbjct: 140389 gctctctcagctaccttttgctggcgcacagaaggtcatgatgccggagataattgtacc 140448

                                   
Query: 543    aaacaatattctcttcgtcca 563
               || || || |||||||||||
Sbjct: 140449 gaataacatcctcttcgtcca 140469



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                          
Query: 54     ggaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagat 113
              ||||| |||||||| ||  || ||||| |||||||||||||| |||||||||||||||||
Sbjct: 137605 ggaggagaacggcgcccctccgaacgtcaccatctacatcaacaacctcaacgagaagat 137664

                       
Query: 114    caaactcga 122
              ||| |||||
Sbjct: 137665 caagctcga 137673



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                   
Query: 392    ctgaaaagaagcagaagcgtgagcagcaccacgatgt 428
              ||||||||||||||||||||||||||||||| |||||
Sbjct: 139597 ctgaaaagaagcagaagcgtgagcagcaccatgatgt 139633
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  149 bits (75), Expect = 1e-32
 Identities = 120/135 (88%)
 Strand = Plus / Plus

                                                                           
Query: 148     gttttctcccagtttgggaaaatcattgaggtgcttgcttttaagactttgaagcataaa 207
               |||||||||||||||||||| ||  |||| || || ||||| ||||||||||||||||||
Sbjct: 3150995 gttttctcccagtttgggaagattcttgatgttctcgctttcaagactttgaagcataaa 3151054

                                                                           
Query: 208     gggcaagcatgggtcgtgttcgaagatgttgcatcagcaaccgaggctttgaagaggatg 267
               || ||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct: 3151055 ggccaagcctgggttgtgtttgaagatgttgcttcagcaactgaggctttgaagagcatg 3151114

                              
Query: 268     caagatttccccttc 282
               ||||| |||||||||
Sbjct: 3151115 caagacttccccttc 3151129



 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                           
Query: 304     caatatgccaagaccaagtcagatgttgtagcaaaagctgatggcaccttcgtacctcga 363
               ||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||
Sbjct: 3151472 caatatgccaagaccaaatcggatattatagcaaaagctgatggcacctttgtacctcga 3151531

                                           
Query: 364     gaaaaaaggaagaggaatgatgagaaac 391
               |||| |||||||||||| ||||||||||
Sbjct: 3151532 gaaagaaggaagaggaacgatgagaaac 3151559



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                           
Query: 483     gctctctcagctaccttttggtgcgggaccgaaggtcatgatgccagagattattgtacc 542
               |||||||||||||||||||| ||  | || ||||||||||||||| ||||| ||||||||
Sbjct: 3153145 gctctctcagctaccttttgctggcgcacagaaggtcatgatgccggagataattgtacc 3153204

                                    
Query: 543     aaacaatattctcttcgtcca 563
                || || || |||||||||||
Sbjct: 3153205 gaataacatcctcttcgtcca 3153225



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                           
Query: 54      ggaggcgaacggcgtccagccaaacgtgaccatctacatcaataacctcaacgagaagat 113
               ||||| |||||||| ||  || ||||| |||||||||||||| |||||||||||||||||
Sbjct: 3150361 ggaggagaacggcgcccctccgaacgtcaccatctacatcaacaacctcaacgagaagat 3150420

                        
Query: 114     caaactcga 122
               ||| |||||
Sbjct: 3150421 caagctcga 3150429



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                    
Query: 392     ctgaaaagaagcagaagcgtgagcagcaccacgatgt 428
               ||||||||||||||||||||||||||||||| |||||
Sbjct: 3152353 ctgaaaagaagcagaagcgtgagcagcaccatgatgt 3152389
to top
>emb|Z49990.1|STU1A S.tuberosum mRNA for U1snRNP-specific protein (U1A)
          Length = 999

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                       
Query: 280 ttctatgacaaacccatgaaaattcaatatgccaagaccaagtcagatgttgtagcaaaa 339
           ||||| ||||| || |||| ||| |||||||| ||||| || || |||||||||||||||
Sbjct: 315 ttctacgacaagcctatgagaatacaatatgcaaagacgaaatctgatgttgtagcaaaa 374

                                                       
Query: 340 gctgatggcaccttcgtacctcgagaaaaaaggaagaggaatga 383
           |||||||| || || || || ||||||||||| |||||| ||||
Sbjct: 375 gctgatggtacttttgttccccgagaaaaaagaaagaggcatga 418
to top
>ref|XM_547687.2| PREDICTED: Canis familiaris similar to U1 small nuclear
           ribonucleoprotein A (U1 snRNP protein A) (U1-A) (Sex
           determination protein snf), transcript variant 1
           (LOC490565), mRNA
          Length = 648

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 273 tttccccttctatgacaaacccatgaaaattcaatatgccaagac 317
           |||||||||||||||||| |||||||  ||||| |||||||||||
Sbjct: 222 tttccccttctatgacaagcccatgagcattcagtatgccaagac 266
to top
>ref|XM_845070.1| PREDICTED: Canis familiaris similar to U1 small nuclear
           ribonucleoprotein A (U1 snRNP protein A) (U1-A) (Sex
           determination protein snf), transcript variant 2
           (LOC490565), mRNA
          Length = 654

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 273 tttccccttctatgacaaacccatgaaaattcaatatgccaagac 317
           |||||||||||||||||| |||||||  ||||| |||||||||||
Sbjct: 222 tttccccttctatgacaagcccatgagcattcagtatgccaagac 266
to top
>ref|XM_855704.1| PREDICTED: Canis familiaris similar to U1 small nuclear
           ribonucleoprotein A (U1 snRNP protein A) (U1-A) (Sex
           determination protein snf), transcript variant 3
           (LOC490565), mRNA
          Length = 690

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 273 tttccccttctatgacaaacccatgaaaattcaatatgccaagac 317
           |||||||||||||||||| |||||||  ||||| |||||||||||
Sbjct: 222 tttccccttctatgacaagcccatgagcattcagtatgccaagac 266
to top
>emb|BX065687.1|CNS09MUJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC49CG02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 969

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 161 accatctacatcaacaacctgaacgagaagatcaa 195
to top
>emb|BX056096.1|CNS09FG4 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC35AD08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1008

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 166 accatctacatcaacaacctgaacgagaagatcaa 200
to top
>emb|BX048470.1|CNS099KA Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC23CF01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 869

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 845 accatctacatcaacaacctgaacgagaagatcaa 811
to top
>emb|BX048469.1|CNS099K9 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC23CF01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 949

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 140 accatctacatcaacaacctgaacgagaagatcaa 174
to top
>emb|BX047351.1|CNS098P7 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC21CB01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 900

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 831 accatctacatcaacaacctgaacgagaagatcaa 797
to top
>emb|BX047350.1|CNS098P6 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC21CB01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 951

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 131 accatctacatcaacaacctgaacgagaagatcaa 165
to top
>emb|BX046052.1|CNS097P4 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC2BH06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 922

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 836 accatctacatcaacaacctgaacgagaagatcaa 802
to top
>emb|BX046051.1|CNS097P3 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC2BH06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 938

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 135 accatctacatcaacaacctgaacgagaagatcaa 169
to top
>emb|BX041238.1|CNS093ZE Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC12CA05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 983

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 881 accatctacatcaacaacctgaacgagaagatcaa 847
to top
>emb|BX041237.1|CNS093ZD Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC12CA05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1024

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 179 accatctacatcaacaacctgaacgagaagatcaa 213
to top
>emb|BX041154.1|CNS093X2 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC12BE05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 442

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 158 accatctacatcaacaacctgaacgagaagatcaa 192
to top
>ref|XM_320869.2| Anopheles gambiae str. PEST ENSANGP00000019197
           (ENSANGG00000016708), partial mRNA
          Length = 651

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 82  accatctacatcaataacctcaacgagaagatcaa 116
           |||||||||||||| ||||| ||||||||||||||
Sbjct: 22  accatctacatcaacaacctgaacgagaagatcaa 56
to top
>ref|XM_784141.1| PREDICTED: Strongylocentrotus purpuratus similar to U1 small
           nuclear ribonucleoprotein A (U1 snRNP protein A) (U1A
           protein) (U1-A) (LOC584276), partial mRNA
          Length = 724

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 274 ttccccttctatgacaaacccatga 298
           |||||||||||||||||||||||||
Sbjct: 176 ttccccttctatgacaaacccatga 200
to top
>gb|BT019068.1| Zea mays clone Contig631.F mRNA sequence
          Length = 1094

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 81  gaccatctacatcaataacctcaacgagaagatcaa 116
           |||||||||| |||| ||||||||||||||| ||||
Sbjct: 981 gaccatctacctcaacaacctcaacgagaaggtcaa 946
to top
>gb|BC044979.1| Xenopus laevis sans fille, mRNA (cDNA clone MGC:52976
           IMAGE:4930667), complete cds
          Length = 1228

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 85  atctacatcaataacctcaacgagaagatcaaactcgacgcacttaagaagtccctcaat 144
           ||||||||||| |||||||| ||||| ||||||   || | ||| |||||||||||| ||
Sbjct: 83  atctacatcaacaacctcaatgagaaaatcaaaaaagatgaactaaagaagtccctctat 142

                               
Query: 145 gcggttttctcccagtttgg 164
           ||  | ||||| ||||||||
Sbjct: 143 gccatattctcgcagtttgg 162
to top
>emb|X57953.1|XLU1AA X.laevis U1 A mRNA
          Length = 1180

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 85  atctacatcaataacctcaacgagaagatcaaactcgacgcacttaagaagtccctcaat 144
           ||||||||||| |||||||| ||||| ||||||   || | ||| |||||||||||| ||
Sbjct: 87  atctacatcaacaacctcaatgagaaaatcaaaaaagatgaactaaagaagtccctctat 146

                               
Query: 145 gcggttttctcccagtttgg 164
           ||  | ||||| ||||||||
Sbjct: 147 gccatattctcgcagtttgg 166
to top
>gb|AF549988.1| Xenopus laevis clone S10-50-D6 mRNA sequence
          Length = 744

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 85  atctacatcaataacctcaacgagaagatcaaactcgacgcacttaagaagtccctcaat 144
           ||||||||||| |||||||| ||||| ||||||   || | ||| |||||||||||| ||
Sbjct: 262 atctacatcaacaacctcaatgagaaaatcaaaaaagatgaactaaagaagtccctctat 321

                               
Query: 145 gcggttttctcccagtttgg 164
           ||  | ||||| ||||||||
Sbjct: 322 gccatattctcgcagtttgg 341
to top
>gb|AY103846.1| Zea mays PCO130752 mRNA sequence
          Length = 1237

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 81  gaccatctacatcaataacctcaacgagaagatcaa 116
           |||||||||| |||| ||||||||||||||| ||||
Sbjct: 201 gaccatctacctcaacaacctcaacgagaaggtcaa 236
to top
>gb|AC154510.2| Mus musculus BAC clone RP23-210I20 from chromosome 13, complete sequence
          Length = 186169

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 131    agaagtccctcaatgcggttttctccc 157
              |||||||||| ||||||||||||||||
Sbjct: 155509 agaagtccctaaatgcggttttctccc 155535
to top
>gb|U55857.1| Caenorhabditis elegans cosmid K08D10, complete sequence
          Length = 32640

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 88    tacatcaataacctcaacgagaagatcaaactcga 122
             |||||||| || |||||||||||||||||| ||||
Sbjct: 18211 tacatcaacaatctcaacgagaagatcaaaatcga 18245
to top
>ref|NM_068103.2| Caenorhabditis elegans RNP (RRM RNA binding domain) containing
           family member (rnp-2) (rnp-2) mRNA, complete cds
          Length = 717

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 88  tacatcaataacctcaacgagaagatcaaactcga 122
           |||||||| || |||||||||||||||||| ||||
Sbjct: 37  tacatcaacaatctcaacgagaagatcaaaatcga 71
to top
>emb|CT573016.5| Mouse DNA sequence from clone RP23-78E16 on chromosome 13, complete
              sequence
          Length = 211097

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 131    agaagtccctcaatgcggttttctccc 157
              |||||||||| ||||||||||||||||
Sbjct: 159256 agaagtccctaaatgcggttttctccc 159230
to top
>ref|XM_845294.1| PREDICTED: Canis familiaris similar to small nuclear
           ribonucleoprotein polypeptide A (predicted) (LOC608314),
           mRNA
          Length = 702

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 91  atcaataacctcaacgagaagatcaa 116
           ||||| ||||||||||||||||||||
Sbjct: 40  atcaacaacctcaacgagaagatcaa 65
to top
>ref|XM_533663.2| PREDICTED: Canis familiaris similar to U1 small nuclear
           ribonucleoprotein A (U1 snRNP protein A) (U1A protein)
           (U1-A) (LOC476454), mRNA
          Length = 1133

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 91  atcaataacctcaacgagaagatcaa 116
           ||||| ||||||||||||||||||||
Sbjct: 102 atcaacaacctcaacgagaagatcaa 127



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 273 tttccccttctatgacaaacccatgaaaattcaatatgccaagac 317
           |||||||||||||||||| || |||   ||||| |||||||||||
Sbjct: 284 tttccccttctatgacaagcctatgcgcattcagtatgccaagac 328
to top
>gb|AC105277.2| Homo sapiens chromosome 1 clone RP4-794H19, complete sequence
          Length = 161739

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 364   gaaaaaaggaagaggaatgatgagaa 389
             ||||||||| ||||||||||||||||
Sbjct: 80455 gaaaaaaggcagaggaatgatgagaa 80480
to top
>gb|BT019360.1| Synthetic construct Homo sapiens Down syndrome critical region gene
           3 mRNA, partial cds
          Length = 894

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 413 agcagcaccacgatgttaacc 433
           |||||||||||||||||||||
Sbjct: 839 agcagcaccacgatgttaacc 819
to top
>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   gaatgatgagaaacctgaaaa 398
             |||||||||||||||||||||
Sbjct: 45178 gaatgatgagaaacctgaaaa 45198
to top
>ref|XM_880176.1| PREDICTED: Bos taurus similar to U1 small nuclear ribonucleoprotein
           A (U1 snRNP protein A) (U1A protein) (U1-A), transcript
           variant 2 (LOC509802), mRNA
          Length = 996

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 274 ttccccttctatgacaaacccatgaaaattcaatatgccaagacc 318
           ||||||||||| ||||| ||||||   || |||||||||||||||
Sbjct: 423 ttccccttctacgacaagcccatgcgcatccaatatgccaagacc 467
to top
>ref|XM_880255.1| PREDICTED: Bos taurus similar to U1 small nuclear ribonucleoprotein
           A (U1 snRNP protein A) (U1A protein) (U1-A), transcript
           variant 4 (LOC509802), mRNA
          Length = 1269

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 274 ttccccttctatgacaaacccatgaaaattcaatatgccaagacc 318
           ||||||||||| ||||| ||||||   || |||||||||||||||
Sbjct: 423 ttccccttctacgacaagcccatgcgcatccaatatgccaagacc 467
to top
>ref|XM_586842.2| PREDICTED: Bos taurus similar to U1 small nuclear ribonucleoprotein
           A (U1 snRNP protein A) (U1A protein) (U1-A), transcript
           variant 1 (LOC509802), mRNA
          Length = 1172

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 274 ttccccttctatgacaaacccatgaaaattcaatatgccaagacc 318
           ||||||||||| ||||| ||||||   || |||||||||||||||
Sbjct: 326 ttccccttctacgacaagcccatgcgcatccaatatgccaagacc 370
to top
>ref|XM_880198.1| PREDICTED: Bos taurus similar to U1 small nuclear ribonucleoprotein
           A (U1 snRNP protein A) (U1A protein) (U1-A), transcript
           variant 3 (LOC509802), mRNA
          Length = 1089

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 274 ttccccttctatgacaaacccatgaaaattcaatatgccaagacc 318
           ||||||||||| ||||| ||||||   || |||||||||||||||
Sbjct: 423 ttccccttctacgacaagcccatgcgcatccaatatgccaagacc 467
to top
>ref|XM_753705.1| Ustilago maydis 521 hypothetical protein (UM02651.1) partial mRNA
          Length = 1455

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 61   aacggcgtccagccaaacgtg 81
            |||||||||||||||||||||
Sbjct: 1094 aacggcgtccagccaaacgtg 1074
to top
>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 369   aaggaagaggaatgatgagaa 389
             |||||||||||||||||||||
Sbjct: 43437 aaggaagaggaatgatgagaa 43457
to top
>gb|BC112544.1| Bos taurus similar to U1 small nuclear ribonucleoprotein A (U1
           snRNP protein A) (U1A protein) (U1-A), mRNA (cDNA clone
           MGC:137110 IMAGE:8015759), complete cds
          Length = 1183

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 274 ttccccttctatgacaaacccatgaaaattcaatatgccaagacc 318
           ||||||||||| ||||| ||||||   || |||||||||||||||
Sbjct: 308 ttccccttctacgacaagcccatgcgcatccaatatgccaagacc 352
to top
>emb|AL357507.9| Human DNA sequence from clone RP11-694J20 on chromosome 6 Contains a
             CpG island, complete sequence
          Length = 178828

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 367   aaaaggaagaggaatgatgag 387
             |||||||||||||||||||||
Sbjct: 22635 aaaaggaagaggaatgatgag 22615
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>dbj|AK126461.1| Homo sapiens cDNA FLJ44497 fis, clone UTERU3000226
          Length = 5634

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  agcagcaccacgatgttaacc 433
            |||||||||||||||||||||
Sbjct: 3461 agcagcaccacgatgttaacc 3441
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>ref|NM_006052.1| Homo sapiens Down syndrome critical region gene 3 (DSCR3), mRNA
          Length = 3252

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  agcagcaccacgatgttaacc 433
            |||||||||||||||||||||
Sbjct: 1078 agcagcaccacgatgttaacc 1058
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>gb|AC079630.18| Homo sapiens 12 BAC RP11-476D10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 178388

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  cttgcttttaagactttgaag 201
            |||||||||||||||||||||
Sbjct: 6282 cttgcttttaagactttgaag 6262
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>gb|AC007784.7| Homo sapiens 12p13 BAC RPCI11-1092P21 (Roswell Park Cancer Library Human
              BAC Library) complete sequence
          Length = 188364

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 362    gagaaaaaaggaagaggaatgatgagaaa 390
              ||||| ||||||||||||| |||||||||
Sbjct: 179832 gagaataaaggaagaggaaggatgagaaa 179804
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>gb|AC108081.2| Homo sapiens chromosome 16 clone CTC-661I16, complete sequence
          Length = 100808

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   agaaaaaaggaagaggaatga 383
             |||||||||||||||||||||
Sbjct: 34873 agaaaaaaggaagaggaatga 34893
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 378      gaatgatgagaaacctgaaaa 398
                |||||||||||||||||||||
Sbjct: 26343876 gaatgatgagaaacctgaaaa 26343896
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>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence
          Length = 112084

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 301   attcaatatgccaagaccaag 321
             |||||||||||||||||||||
Sbjct: 92491 attcaatatgccaagaccaag 92511
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>gb|AC157826.2| Pan troglodytes BAC clone CH251-276A2 from chromosome unknown, complete
             sequence
          Length = 185414

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   cttgcttttaagactttgaag 201
             |||||||||||||||||||||
Sbjct: 64529 cttgcttttaagactttgaag 64509
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>emb|BX648191.1|HSM808339 Homo sapiens mRNA; cDNA DKFZp686N0127 (from clone DKFZp686N0127)
          Length = 4416

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  agcagcaccacgatgttaacc 433
            |||||||||||||||||||||
Sbjct: 2220 agcagcaccacgatgttaacc 2200
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>gb|AY890984.1| Synthetic construct Homo sapiens clone FLH020742.01L Down syndrome
           critical region gene 3 (DSCR3) mRNA, partial cds
          Length = 894

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 413 agcagcaccacgatgttaacc 433
           |||||||||||||||||||||
Sbjct: 839 agcagcaccacgatgttaacc 819
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>emb|AJ001867.1|HS001867 Homo Sapiens mRNA, partial cDNA sequence from cDNA selection,
           DCR1-11.0
          Length = 1028

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 413 agcagcaccacgatgttaacc 433
           |||||||||||||||||||||
Sbjct: 929 agcagcaccacgatgttaacc 909
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>gb|AC163763.3| Pan troglodytes BAC clone CH251-180G5 from chromosome unknown, complete
              sequence
          Length = 157645

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    cttgcttttaagactttgaag 201
              |||||||||||||||||||||
Sbjct: 105636 cttgcttttaagactttgaag 105616
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>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 413    agcagcaccacgatgttaacc 433
              |||||||||||||||||||||
Sbjct: 105422 agcagcaccacgatgttaacc 105442
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>dbj|AP001432.2| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T1601, complete
             sequence
          Length = 102247

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 413   agcagcaccacgatgttaacc 433
             |||||||||||||||||||||
Sbjct: 72817 agcagcaccacgatgttaacc 72837
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>gb|BC110655.1| Homo sapiens Down syndrome critical region gene 3, mRNA (cDNA clone
            MGC:117385 IMAGE:6157155), complete cds
          Length = 3711

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  agcagcaccacgatgttaacc 433
            |||||||||||||||||||||
Sbjct: 1520 agcagcaccacgatgttaacc 1500
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 378      gaatgatgagaaacctgaaaa 398
                |||||||||||||||||||||
Sbjct: 26657604 gaatgatgagaaacctgaaaa 26657624
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>dbj|AP000151.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 3/16, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 413   agcagcaccacgatgttaacc 433
             |||||||||||||||||||||
Sbjct: 74839 agcagcaccacgatgttaacc 74859
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>dbj|AP000010.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 3/13
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 413   agcagcaccacgatgttaacc 433
             |||||||||||||||||||||
Sbjct: 22494 agcagcaccacgatgttaacc 22514
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>dbj|D87343.1| Homo sapiens mRNA for DCRA, complete cds
          Length = 3252

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 413  agcagcaccacgatgttaacc 433
            |||||||||||||||||||||
Sbjct: 1078 agcagcaccacgatgttaacc 1058
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>gb|AC152563.1| Ornithorhynchus anatinus chromosome UNK clone OABb-291A1, complete
              sequence
          Length = 169955

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    gaatgatgagaaacctgaaa 397
              ||||||||||||||||||||
Sbjct: 106005 gaatgatgagaaacctgaaa 105986
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>ref|XM_514668.1| PREDICTED: Pan troglodytes LOC458273 (LOC458273), mRNA
          Length = 2097

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 ttctcccagtttgggaaaat 170
           ||||||||||||||||||||
Sbjct: 742 ttctcccagtttgggaaaat 761
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>gb|AY542999.1| Bigelowiella natans small nuclear ribonucleoprotein mRNA, complete
           cds
          Length = 1531

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 81  gaccatctacatcaataacctcaacgagaagatcaaactcgacg 124
           ||||||||||||| | ||||| ||||| ||| |||||| |||||
Sbjct: 127 gaccatctacatccagaaccttaacgaaaagctcaaacgcgacg 170
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>ref|XM_001006374.1| PREDICTED: Mus musculus similar to small nuclear ribonucleoprotein
           polypeptide A (LOC673808), mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 ttccccttctatgacaaacccatg 297
           ||||| ||||||||||||||||||
Sbjct: 232 ttccctttctatgacaaacccatg 255
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>ref|XM_001006366.1| PREDICTED: Mus musculus similar to small nuclear ribonucleoprotein
           polypeptide A (LOC432716), mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 ttccccttctatgacaaacccatg 297
           ||||| ||||||||||||||||||
Sbjct: 232 ttccctttctatgacaaacccatg 255
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>ref|XM_990056.1| PREDICTED: Mus musculus similar to small nuclear ribonucleoprotein
           polypeptide A (LOC667350), mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 274 ttccccttctatgacaaacccatg 297
           ||||| ||||||||||||||||||
Sbjct: 232 ttccctttctatgacaaacccatg 255
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>gb|AC110253.10| Mus musculus chromosome 5, clone RP23-270N2, complete sequence
          Length = 224182

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    ctggcgtgggcatgcatgcc 456
              ||||||||||||||||||||
Sbjct: 218193 ctggcgtgggcatgcatgcc 218174
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>gb|AC073055.8| Homo sapiens BAC clone RP11-111J8 from 7, complete sequence
          Length = 87783

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   ttgcttttaagactttgaag 201
             ||||||||||||||||||||
Sbjct: 42843 ttgcttttaagactttgaag 42862
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>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence
          Length = 214124

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    gaaaaaaggaagaggaatga 383
              ||||||||||||||||||||
Sbjct: 106849 gaaaaaaggaagaggaatga 106830
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>emb|AL441989.13| Human DNA sequence from clone RP11-360A18 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 105068

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   aaaaaaggaagaggaatgat 384
             ||||||||||||||||||||
Sbjct: 97903 aaaaaaggaagaggaatgat 97884
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 436     gctggcgtgggcatgcatgc 455
               ||||||||||||||||||||
Sbjct: 2683546 gctggcgtgggcatgcatgc 2683527
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>ref|XM_963178.1| PREDICTED: Tribolium castaneum similar to U1 small nuclear
           ribonucleoprotein A (U1 snRNP protein A) (U1-A) (Sex
           determination protein snf) (LOC656668), mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 85  atctacatcaataacctcaacgagaagatcaa 116
           ||||||||||| ||||| |||||||| |||||
Sbjct: 25  atctacatcaacaacctaaacgagaaaatcaa 56
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>ref|XM_780455.1| PREDICTED: Strongylocentrotus purpuratus similar to cadherin-like 23
            (LOC580396), partial mRNA
          Length = 7319

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   catctacatcaataacctcaacga 107
            ||||||||||||| ||||||||||
Sbjct: 5232 catctacatcaatgacctcaacga 5255
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>gb|AC117602.9| Mus musculus chromosome 5, clone RP23-462C22, complete sequence
          Length = 205604

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    ctggcgtgggcatgcatgcc 456
              ||||||||||||||||||||
Sbjct: 109588 ctggcgtgggcatgcatgcc 109569
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>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     accatctacatcaataacctcaac 105
              ||||||||||||||||||| ||||
Sbjct: 139020 accatctacatcaataaccccaac 138997
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>gb|AC016304.8| Homo sapiens, clone RP11-25H11, complete sequence
          Length = 164336

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   taagactttgaagcataaag 208
             ||||||||||||||||||||
Sbjct: 47076 taagactttgaagcataaag 47057
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>gb|AC068875.5| Homo sapiens chromosome 15, clone RP11-720L8, complete sequence
          Length = 166706

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    taagactttgaagcataaag 208
              ||||||||||||||||||||
Sbjct: 140563 taagactttgaagcataaag 140544
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>gb|AF292561.1|AF292561 Strongyloides stercoralis G protein alpha subunit 2 (gpa-2) gene,
            complete cds
          Length = 4148

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  catgaaaattcaatatgcca 313
            ||||||||||||||||||||
Sbjct: 3590 catgaaaattcaatatgcca 3609
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>gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete sequence
          Length = 157051

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    accatctacatcaataacctcaac 105
             ||||||||||||||||||| ||||
Sbjct: 16455 accatctacatcaataaccccaac 16432
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>gb|AC152455.1| Pan troglodytes BAC clone RP43-4I15 from chromosome 7, complete
             sequence
          Length = 136468

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttgcttttaagactttgaag 201
             ||||||||||||||||||||
Sbjct: 73712 ttgcttttaagactttgaag 73693
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>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 204394

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 274    ttccccttctatgacaaacccatg 297
              ||||| ||||||||||||||||||
Sbjct: 143387 ttccctttctatgacaaacccatg 143410
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>gb|AC078809.9| Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162646

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   agaaacctgaaaagaagcag 405
             ||||||||||||||||||||
Sbjct: 86615 agaaacctgaaaagaagcag 86634
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>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete
              sequence
          Length = 156278

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 274    ttccccttctatgacaaacccatg 297
              ||||| ||||||||||||||||||
Sbjct: 148698 ttccctttctatgacaaacccatg 148675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,934,314
Number of Sequences: 3902068
Number of extensions: 4934314
Number of successful extensions: 106821
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106516
Number of HSP's gapped (non-prelim): 302
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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