ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal29b17 |
|---|---|
| Clone Library Name | barley_pub |
>NQO3_PARDE (P29915) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH| dehydrogenase I, chain 3) (NDH-1, chain 3) Length = 672 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = -1 Query: 218 PRIRLHELPERAGNAG--LVEAVHGDEHPTEEEQQRVGDLRTNPEAA 84 PR HE AGN LVE V G P +V DLR PE A Sbjct: 33 PRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVKDLRPGPEGA 79
>ADD_MYCTU (P63907) Adenosine deaminase (EC 3.5.4.4) (Adenosine| aminohydrolase) Length = 365 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +1 Query: 28 RLAVDPSVHGDGGF*LTRLAASGLVRRSPTRCCSSS 135 R+ D V DGGF L RLAA +R P C SS Sbjct: 235 RIVDDIDVDADGGFQLGRLAAILRDKRIPLELCPSS 270
>ADD_MYCBO (P63908) Adenosine deaminase (EC 3.5.4.4) (Adenosine| aminohydrolase) Length = 365 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +1 Query: 28 RLAVDPSVHGDGGF*LTRLAASGLVRRSPTRCCSSS 135 R+ D V DGGF L RLAA +R P C SS Sbjct: 235 RIVDDIDVDADGGFQLGRLAAILRDKRIPLELCPSS 270
>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)| [Includes: ATP-dependent asparagine adenylase (AsnA) (Asparagine activase); ATP-dependent glutamine adenylase (GlnA) (Glutamine activase); ATP-dependent tyrosine adenylase (TyrA) (Ty Length = 6486 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 184 LGMPVLLKPSTVMNIPQKKSSSG*ETYVPIQKPP 83 L + VL T+ + Q ++SG ETYVPI+ P Sbjct: 3093 LPLKVLFAQPTIKALAQYVATSGKETYVPIEPAP 3126
>Y2703_MYCBO (P0A607) Hypothetical protein Mb2703| Length = 429 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 108 VSYPLLLFFCGMFITVDGFNKTGI 179 V + LLFF G+FI V KTG+ Sbjct: 274 VEWDTLLFFAGLFIMVGALVKTGV 297
>Y2684_MYCTU (P0A606) Hypothetical protein Rv2684/MT2758| Length = 429 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 108 VSYPLLLFFCGMFITVDGFNKTGI 179 V + LLFF G+FI V KTG+ Sbjct: 274 VEWDTLLFFAGLFIMVGALVKTGV 297
>TMC1_HUMAN (Q8TDI8) Transmembrane cochlear-expressed protein 1| Length = 760 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = -2 Query: 274 LERRRMTRARMTIPVGVSIRAYGSMNSQNVLGMPVLLKPSTVMNIP 137 +E ++ +A +T+ I+AY + S+N G P + P+ V P Sbjct: 469 IEEEKLVKANITLWEANMIKAYNASFSENSTGPPFFVHPADVPRGP 514
>RDRP_RDVA (Q02119) RNA-directed RNA polymerase (EC 2.7.7.48) (Replicase)| Length = 1444 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1 Query: 221 DPRIRLHELPERAGNAGLVEAVHGDEHPTEEEQQR-VGDLRTNPEAASLVS 72 DP I+LHE + +G + + E++ G E +R +G LR N L++ Sbjct: 911 DPSIQLHESEKDSGASDVTESLRGFGQVIYEYNKRAIGTLRVNALYGRLIA 961
>TRHDE_RAT (Q10836) Thyrotropin-releasing hormone degrading ectoenzyme (EC| 3.4.19.6) (TRH-degrading ectoenzyme) (TRH-DE) (TRH-specific aminopeptidase) (Thyroliberinase) (Pyroglutamyl-peptidase II) (PAP-II) Length = 1025 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%) Frame = -1 Query: 194 PERAGNAGLVEAVHGDEHPTEEEQQR-VGDLRTNPEAASLVS*KPPS--------PWT 48 PER GN+ + + H EE QR +G++ T A S PPS PWT Sbjct: 85 PERGGNSSYPGSARRNHHAGEESSQREIGEVGT----AGTPSAHPPSEEEQEQWQPWT 138
>T7L1B_BRARE (Q800Q5) Transcription factor 7-like 1-B (HMG box transcription| factor 3-B) (TCF-3-B) Length = 551 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -1 Query: 137 TEEEQQRVGDLRTNPEAASLVS*KPPSPWTDGSTASREG 21 T EQ + L T PE L+S PPS + S++S G Sbjct: 466 THSEQAQPLSLTTKPERFPLLSKPPPSSSSSSSSSSSSG 504
>Y1343_MYCTU (Q11013) Hypothetical protein Rv1343c/MT1384| Length = 126 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 27 TAGCGSIRPWRWRLLADEAGGFW-IGT*VSYPLLLFFC 137 T GC ++ W+W +G F +G + +PL +FC Sbjct: 19 TCGCLALGWWQWTRFQSTSGTFQNLGYALQWPLFAWFC 56
>JHD1B_MOUSE (Q6P1G2) JmjC domain-containing histone demethylation protein 1B| (EC 1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and leucine-rich repeat protein 10) (F-box protein FBL10) Length = 1309 Score = 27.3 bits (59), Expect = 8.8 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 15/71 (21%) Frame = -1 Query: 218 PRIRLHELPERAGNAGLVEAVHGDEH---------PTE-EEQQRVGDLRTNPEAASLVS* 69 PR R E P++ G++ D H P E ++R L+T+P ++S +S Sbjct: 747 PRRRSDEHPKKVPADGILRRKSDDVHLRRKRKYEKPQELSGRKRASSLQTSPGSSSHLSP 806 Query: 68 KPP-----SPW 51 +PP SPW Sbjct: 807 RPPLGSSLSPW 817
>RIMS2_MOUSE (Q9EQZ7) Regulating synaptic membrane exocytosis protein 2| (Rab3-interacting molecule 2) (RIM 2) (Rab3-interacting protein 2) Length = 1530 Score = 27.3 bits (59), Expect = 8.8 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 7/98 (7%) Frame = -2 Query: 295 VGTLXATLERRRMTRARMTIPV---GVSIRAYGSMNSQNVLGMPVLLKPSTVMNIPQKKS 125 V A LE R++ RM P VS R +M +Q M + + PQ+ S Sbjct: 411 VSLANAELEDSRISLLRMDRPSRQRSVSERR-AAMENQRSYSMERTREAQGQSSYPQRTS 469 Query: 124 SSG*ETY----VPIQKPPASSARSLHLHGRMDPQPAVR 23 + T +P+ +P A SL +DP AVR Sbjct: 470 NHSPPTPRRSPIPLDRPDMRRADSLRKQHHLDPSSAVR 507
>Y2685_MYCTU (O07187) Hypothetical protein Rv2685/MT2759| Length = 428 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 108 VSYPLLLFFCGMFITVDGFNKTGI 179 V + LLFF G+F+ V KTG+ Sbjct: 274 VEWDTLLFFAGLFVMVGALVKTGV 297
>SCD5_YEAST (P34758) Protein SCD5 (Protein FTB1)| Length = 872 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = -1 Query: 206 LHELPERAGNAGLVEAVHGDEHPTEEEQQRVGDLR 102 L L +R N+GLV ++ ++ TEEE++ + D++ Sbjct: 328 LKRLYKRRKNSGLVSSLPSEQQETEEEKKVLEDMK 362 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,674,269 Number of Sequences: 219361 Number of extensions: 866132 Number of successful extensions: 2902 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2832 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2902 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
