ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal29b17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468453.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2588 Score = 222 bits (112), Expect = 7e-55 Identities = 238/281 (84%) Strand = Plus / Plus Query: 126 ctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcattcccagc 185 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||| Sbjct: 1782 ctcttcttctgtgggatgttcatcactgtggatggattcaacaagacgggcattcctagc 1841 Query: 186 acgttctgggagttcatggagccgtatgcgcggatcgacacgccgaccgggatcgtcatc 245 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||| Sbjct: 1842 gcattctgggaattcatggagccctatgcacggatcgatacaccgaccgggatagtaatc 1901 Query: 246 ctcgccctggtcatccttctcctctccaatgtcgcgtncaatgtcccgaccgtcctgctg 305 ||||||||||| || ||||||||||| ||||| |||| ||||| || || || || ||| Sbjct: 1902 ctcgccctggttattcttctcctctcaaatgtggcgtcaaatgttccaactgttctcctg 1961 Query: 306 ctcggcgcacgggtggcggcctcggcggcggngatctcccccgcggcggagaccaacgcg 365 || || || |||||||| || || || |||| |||||||| || || |||||||| || Sbjct: 1962 cttggtgctcgggtggcagcgtcagcagcggccatctcccctgcagcagagaccaatgcc 2021 Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacct 406 ||||| |||||||| ||||| ||||||||||||| |||||| Sbjct: 2022 tggctcatcctggcctgggtcagcacggtggccggcaacct 2062
>dbj|AK099610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049H16, full insert sequence Length = 1745 Score = 222 bits (112), Expect = 7e-55 Identities = 238/281 (84%) Strand = Plus / Plus Query: 126 ctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcattcccagc 185 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||| Sbjct: 925 ctcttcttctgtgggatgttcatcactgtggatggattcaacaagacgggcattcctagc 984 Query: 186 acgttctgggagttcatggagccgtatgcgcggatcgacacgccgaccgggatcgtcatc 245 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||| Sbjct: 985 gcattctgggaattcatggagccctatgcacggatcgatacaccgaccgggatagtaatc 1044 Query: 246 ctcgccctggtcatccttctcctctccaatgtcgcgtncaatgtcccgaccgtcctgctg 305 ||||||||||| || ||||||||||| ||||| |||| ||||| || || || || ||| Sbjct: 1045 ctcgccctggttattcttctcctctcaaatgtggcgtcaaatgttccaactgttctcctg 1104 Query: 306 ctcggcgcacgggtggcggcctcggcggcggngatctcccccgcggcggagaccaacgcg 365 || || || |||||||| || || || |||| |||||||| || || |||||||| || Sbjct: 1105 cttggtgctcgggtggcagcgtcagcagcggccatctcccctgcagcagagaccaatgcc 1164 Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacct 406 ||||| |||||||| ||||| ||||||||||||| |||||| Sbjct: 1165 tggctcatcctggcctgggtcagcacggtggccggcaacct 1205
>dbj|AK065330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A03, full insert sequence Length = 2588 Score = 222 bits (112), Expect = 7e-55 Identities = 238/281 (84%) Strand = Plus / Plus Query: 126 ctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcattcccagc 185 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||| Sbjct: 1782 ctcttcttctgtgggatgttcatcactgtggatggattcaacaagacgggcattcctagc 1841 Query: 186 acgttctgggagttcatggagccgtatgcgcggatcgacacgccgaccgggatcgtcatc 245 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||| Sbjct: 1842 gcattctgggaattcatggagccctatgcacggatcgatacaccgaccgggatagtaatc 1901 Query: 246 ctcgccctggtcatccttctcctctccaatgtcgcgtncaatgtcccgaccgtcctgctg 305 ||||||||||| || ||||||||||| ||||| |||| ||||| || || || || ||| Sbjct: 1902 ctcgccctggttattcttctcctctcaaatgtggcgtcaaatgttccaactgttctcctg 1961 Query: 306 ctcggcgcacgggtggcggcctcggcggcggngatctcccccgcggcggagaccaacgcg 365 || || || |||||||| || || || |||| |||||||| || || |||||||| || Sbjct: 1962 cttggtgctcgggtggcagcgtcagcagcggccatctcccctgcagcagagaccaatgcc 2021 Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacct 406 ||||| |||||||| ||||| ||||||||||||| |||||| Sbjct: 2022 tggctcatcctggcctgggtcagcacggtggccggcaacct 2062
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 168 bits (85), Expect = 9e-39 Identities = 139/157 (88%) Strand = Plus / Plus Query: 126 ctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcattcccagc 185 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||| Sbjct: 35307797 ctcttcttctgtgggatgttcatcactgtggatggattcaacaagacgggcattcctagc 35307856 Query: 186 acgttctgggagttcatggagccgtatgcgcggatcgacacgccgaccgggatcgtcatc 245 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||| Sbjct: 35307857 gcattctgggaattcatggagccctatgcacggatcgatacaccgaccgggatagtaatc 35307916 Query: 246 ctcgccctggtcatccttctcctctccaatgtcgcgt 282 ||||||||||| || ||||||||||| ||||| |||| Sbjct: 35307917 ctcgccctggttattcttctcctctcaaatgtggcgt 35307953 Score = 67.9 bits (34), Expect = 2e-08 Identities = 77/92 (83%) Strand = Plus / Plus Query: 315 cgggtggcggcctcggcggcggngatctcccccgcggcggagaccaacgcgtggctgatc 374 |||||||| || || || |||| |||||||| || || |||||||| || ||||| ||| Sbjct: 35308567 cgggtggcagcgtcagcagcggccatctcccctgcagcagagaccaatgcctggctcatc 35308626 Query: 375 ctggcgtgggtgagcacggtggccgncaacct 406 ||||| ||||| ||||||||||||| |||||| Sbjct: 35308627 ctggcctgggtcagcacggtggccggcaacct 35308658
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 168 bits (85), Expect = 9e-39 Identities = 139/157 (88%) Strand = Plus / Plus Query: 126 ctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcattcccagc 185 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||| Sbjct: 58131 ctcttcttctgtgggatgttcatcactgtggatggattcaacaagacgggcattcctagc 58190 Query: 186 acgttctgggagttcatggagccgtatgcgcggatcgacacgccgaccgggatcgtcatc 245 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||| Sbjct: 58191 gcattctgggaattcatggagccctatgcacggatcgatacaccgaccgggatagtaatc 58250 Query: 246 ctcgccctggtcatccttctcctctccaatgtcgcgt 282 ||||||||||| || ||||||||||| ||||| |||| Sbjct: 58251 ctcgccctggttattcttctcctctcaaatgtggcgt 58287 Score = 67.9 bits (34), Expect = 2e-08 Identities = 77/92 (83%) Strand = Plus / Plus Query: 315 cgggtggcggcctcggcggcggngatctcccccgcggcggagaccaacgcgtggctgatc 374 |||||||| || || || |||| |||||||| || || |||||||| || ||||| ||| Sbjct: 58901 cgggtggcagcgtcagcagcggccatctcccctgcagcagagaccaatgcctggctcatc 58960 Query: 375 ctggcgtgggtgagcacggtggccgncaacct 406 ||||| ||||| ||||||||||||| |||||| Sbjct: 58961 ctggcctgggtcagcacggtggccggcaacct 58992
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 168 bits (85), Expect = 9e-39 Identities = 139/157 (88%) Strand = Plus / Plus Query: 126 ctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcattcccagc 185 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||| Sbjct: 119847 ctcttcttctgtgggatgttcatcactgtggatggattcaacaagacgggcattcctagc 119906 Query: 186 acgttctgggagttcatggagccgtatgcgcggatcgacacgccgaccgggatcgtcatc 245 | |||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||| Sbjct: 119907 gcattctgggaattcatggagccctatgcacggatcgatacaccgaccgggatagtaatc 119966 Query: 246 ctcgccctggtcatccttctcctctccaatgtcgcgt 282 ||||||||||| || ||||||||||| ||||| |||| Sbjct: 119967 ctcgccctggttattcttctcctctcaaatgtggcgt 120003 Score = 67.9 bits (34), Expect = 2e-08 Identities = 77/92 (83%) Strand = Plus / Plus Query: 315 cgggtggcggcctcggcggcggngatctcccccgcggcggagaccaacgcgtggctgatc 374 |||||||| || || || |||| |||||||| || || |||||||| || ||||| ||| Sbjct: 120617 cgggtggcagcgtcagcagcggccatctcccctgcagcagagaccaatgcctggctcatc 120676 Query: 375 ctggcgtgggtgagcacggtggccgncaacct 406 ||||| ||||| ||||||||||||| |||||| Sbjct: 120677 ctggcctgggtcagcacggtggccggcaacct 120708
>ref|NM_196747.1| Oryza sativa (japonica cultivar-group) contains similarity to anion transporter (OSJNBa0076M18.1), mRNA Length = 1584 Score = 83.8 bits (42), Expect = 4e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 118 cgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggca 177 |||||||| |||||||||| |||||||||||||| ||||| || ||||||||||| || | Sbjct: 1136 cgctgctgatcttcttctgcgggatgttcatcacggtggatggattcaacaagactggaa 1195 Query: 178 ttcccagcacgttctgggagttcatggagccgtatgcg 215 |||| | ||| |||||||| || | |||||||||||| Sbjct: 1196 ttccaaacactctctgggagctcgtcgagccgtatgcg 1233 Score = 69.9 bits (35), Expect = 6e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacctg 407 |||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 1384 tggctgatcctggcctgggtgagcacggtggccggcaacctg 1425
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 83.8 bits (42), Expect = 4e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 118 cgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggca 177 |||||||| |||||||||| |||||||||||||| ||||| || ||||||||||| || | Sbjct: 15723094 cgctgctgatcttcttctgcgggatgttcatcacggtggatggattcaacaagactggaa 15723153 Query: 178 ttcccagcacgttctgggagttcatggagccgtatgcg 215 |||| | ||| |||||||| || | |||||||||||| Sbjct: 15723154 ttccaaacactctctgggagctcgtcgagccgtatgcg 15723191 Score = 69.9 bits (35), Expect = 6e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacctg 407 |||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 15723975 tggctgatcctggcctgggtgagcacggtggccggcaacctg 15724016 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 20899919 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 20899965
>gb|AC073393.2|AC073393 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0076M18, complete sequence Length = 132647 Score = 83.8 bits (42), Expect = 4e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 118 cgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggca 177 |||||||| |||||||||| |||||||||||||| ||||| || ||||||||||| || | Sbjct: 18054 cgctgctgatcttcttctgcgggatgttcatcacggtggatggattcaacaagactggaa 18113 Query: 178 ttcccagcacgttctgggagttcatggagccgtatgcg 215 |||| | ||| |||||||| || | |||||||||||| Sbjct: 18114 ttccaaacactctctgggagctcgtcgagccgtatgcg 18151 Score = 69.9 bits (35), Expect = 6e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacctg 407 |||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 18935 tggctgatcctggcctgggtgagcacggtggccggcaacctg 18976
>dbj|AK072242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169G24, full insert sequence Length = 2513 Score = 83.8 bits (42), Expect = 4e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 118 cgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggca 177 |||||||| |||||||||| |||||||||||||| ||||| || ||||||||||| || | Sbjct: 1563 cgctgctgatcttcttctgcgggatgttcatcacggtggatggattcaacaagactggaa 1622 Query: 178 ttcccagcacgttctgggagttcatggagccgtatgcg 215 |||| | ||| |||||||| || | |||||||||||| Sbjct: 1623 ttccaaacactctctgggagctcgtcgagccgtatgcg 1660 Score = 69.9 bits (35), Expect = 6e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacctg 407 |||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 1811 tggctgatcctggcctgggtgagcacggtggccggcaacctg 1852
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 83.8 bits (42), Expect = 4e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 118 cgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggca 177 |||||||| |||||||||| |||||||||||||| ||||| || ||||||||||| || | Sbjct: 15731335 cgctgctgatcttcttctgcgggatgttcatcacggtggatggattcaacaagactggaa 15731394 Query: 178 ttcccagcacgttctgggagttcatggagccgtatgcg 215 |||| | ||| |||||||| || | |||||||||||| Sbjct: 15731395 ttccaaacactctctgggagctcgtcgagccgtatgcg 15731432 Score = 69.9 bits (35), Expect = 6e-09 Identities = 40/42 (95%) Strand = Plus / Plus Query: 366 tggctgatcctggcgtgggtgagcacggtggccgncaacctg 407 |||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 15732216 tggctgatcctggcctgggtgagcacggtggccggcaacctg 15732257 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 20911183 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 20911229
>ref|NM_187647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1353 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 111 tcctacccgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaag 170 |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 898 tcctactcgctgctcgtcttcttctccgggatgttcatcaccgtcagcggcttcaacaag 957 Query: 171 ac 172 || Sbjct: 958 ac 959 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 1151 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 1197
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 111 tcctacccgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaag 170 |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 410109 tcctactcgctgctcgtcttcttctccgggatgttcatcaccgtcagcggcttcaacaag 410050 Query: 171 ac 172 || Sbjct: 410049 ac 410048 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 409761 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 409715 Score = 44.1 bits (22), Expect = 0.35 Identities = 49/58 (84%) Strand = Plus / Minus Query: 121 tgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcat 178 ||||| |||||||||| |||||||| || || || || ||||||||||| || ||||| Sbjct: 2634637 tgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcat 2634580
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 111 tcctacccgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaag 170 |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 410107 tcctactcgctgctcgtcttcttctccgggatgttcatcaccgtcagcggcttcaacaag 410048 Query: 171 ac 172 || Sbjct: 410047 ac 410046 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 409759 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 409713 Score = 44.1 bits (22), Expect = 0.35 Identities = 49/58 (84%) Strand = Plus / Minus Query: 121 tgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcat 178 ||||| |||||||||| |||||||| || || || || ||||||||||| || ||||| Sbjct: 2634747 tgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcat 2634690
>dbj|AK101092.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024M24, full insert sequence Length = 2085 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 111 tcctacccgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaag 170 |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 1115 tcctactcgctgctcgtcttcttctccgggatgttcatcaccgtcagcggcttcaacaag 1174 Query: 171 ac 172 || Sbjct: 1175 ac 1176 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 1368 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 1414
>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03, complete sequence Length = 116214 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 111 tcctacccgctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaag 170 |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 8569 tcctactcgctgctcgtcttcttctccgggatgttcatcaccgtcagcggcttcaacaag 8510 Query: 171 ac 172 || Sbjct: 8509 ac 8508 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 8221 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 8175
>ref|NM_197626.1| Oryza sativa (japonica cultivar-group) putative anion transporter (OSJNBa0001O14.19), mRNA Length = 1458 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 1250 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 1296
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 162318 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 162364
>dbj|AK070040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036G13, full insert sequence Length = 2057 Score = 56.0 bits (28), Expect = 9e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggccgncaacctgtcg 410 |||||||| | ||||||||||||||||||||||| | ||||||||| Sbjct: 1320 cgtggctgctgctggcgtgggtgagcacggtggcggggaacctgtcg 1366
>gb|BT009494.1| Triticum aestivum clone wr1.pk0075.f6:fis, full insert mRNA sequence Length = 914 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 364 cgtggctgatcctggcgtgggtgagcacggtggc 397 |||||||| | ||||||||||||||||||||||| Sbjct: 204 cgtggctgctgctggcgtgggtgagcacggtggc 237
>gb|AY106852.1| Zea mays PCO091082 mRNA sequence Length = 1834 Score = 46.1 bits (23), Expect = 0.089 Identities = 50/59 (84%) Strand = Plus / Plus Query: 120 ctgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcat 178 |||||| |||| ||||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct: 1078 ctgctgatctttttctgcgggatgtttatcactgttgatggcttcaacaaaacgggcat 1136
>ref|XM_470223.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1674 Score = 44.1 bits (22), Expect = 0.35 Identities = 49/58 (84%) Strand = Plus / Plus Query: 121 tgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcat 178 ||||| |||||||||| |||||||| || || || || ||||||||||| || ||||| Sbjct: 1229 tgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcat 1286
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 44.1 bits (22), Expect = 0.35 Identities = 49/58 (84%) Strand = Plus / Plus Query: 121 tgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcat 178 ||||| |||||||||| |||||||| || || || || ||||||||||| || ||||| Sbjct: 35457 tgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcat 35514
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Minus Query: 240 gtcatcctcgccctggtcatccttct 265 |||||||||||||||||| ||||||| Sbjct: 308806 gtcatcctcgccctggtcttccttct 308781
>dbj|AK071480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091E03, full insert sequence Length = 2612 Score = 44.1 bits (22), Expect = 0.35 Identities = 49/58 (84%) Strand = Plus / Plus Query: 121 tgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcat 178 ||||| |||||||||| |||||||| || || || || ||||||||||| || ||||| Sbjct: 1713 tgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcat 1770
>dbj|AK062160.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A12, full insert sequence Length = 1745 Score = 44.1 bits (22), Expect = 0.35 Identities = 49/58 (84%) Strand = Plus / Plus Query: 121 tgctgctcttcttctgtgggatgttcatcaccgtggacggcttcaacaagaccggcat 178 ||||| |||||||||| |||||||| || || || || ||||||||||| || ||||| Sbjct: 967 tgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcat 1024
>gb|AY740402.1| Bos taurus keratin 5 gene, complete cds Length = 5994 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 gggtggcggcctcggcggcgg 336 ||||||||||||||||||||| Sbjct: 5685 gggtggcggcctcggcggcgg 5705
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 311 cgcacgggtggcggcctcggcggcg 335 |||||||| |||||||||||||||| Sbjct: 877718 cgcacgggcggcggcctcggcggcg 877694
>emb|AL133387.8| Human DNA sequence from clone RP11-107I14 on chromosome 10 Contains the 3' end of a novel gene, three novel genes (FLJ34886), the 5' end of the BTRC gene for beta-transducin repeat containing and four CpG islands, complete sequence Length = 157912 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 ggagatggaggcttctagctg 75 ||||||||||||||||||||| Sbjct: 14864 ggagatggaggcttctagctg 14884
>ref|NM_001008663.1| Bos taurus keratin 5 (epidermolysis bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne types) (KRT5), mRNA Length = 1872 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 gggtggcggcctcggcggcgg 336 ||||||||||||||||||||| Sbjct: 1563 gggtggcggcctcggcggcgg 1583
>emb|BX890608.15| Zebrafish DNA sequence from clone CH211-195J11 in linkage group 2, complete sequence Length = 194388 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 ggtctcctacccgctgctgct 127 ||||||||||||||||||||| Sbjct: 52504 ggtctcctacccgctgctgct 52484
>gb|K03535.1|BOVKERIII Bovine epidermal cytokeratin (type II) component III mRNA, 3' end Length = 894 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 gggtggcggcctcggcggcgg 336 ||||||||||||||||||||| Sbjct: 306 gggtggcggcctcggcggcgg 326
>ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3201 Score = 40.1 bits (20), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 330 gcggcggngatctcccccgcggc 352 ||||||| ||||||||||||||| Sbjct: 80 gcggcggagatctcccccgcggc 58
>ref|NM_190019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 846 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggtggcggcctcggcggcgg 336 |||||||||||||||||||| Sbjct: 199 ggtggcggcctcggcggcgg 218
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence Length = 164501 Score = 40.1 bits (20), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 330 gcggcggngatctcccccgcggc 352 ||||||| ||||||||||||||| Sbjct: 74284 gcggcggagatctcccccgcggc 74262
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gggtggcggcctcggcggcg 335 |||||||||||||||||||| Sbjct: 3115658 gggtggcggcctcggcggcg 3115677
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gggtggcggcctcggcggcg 335 |||||||||||||||||||| Sbjct: 1312529 gggtggcggcctcggcggcg 1312548
>emb|CR378663.1| Photobacterium profundum SS9; segment 1/12 Length = 348044 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgctgctgctcttcttctgt 137 |||||||||||||||||||| Sbjct: 281474 cgctgctgctcttcttctgt 281455
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gggtggcggcctcggcggcg 335 |||||||||||||||||||| Sbjct: 1216641 gggtggcggcctcggcggcg 1216660
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cgggtggcggcctcggcggc 334 |||||||||||||||||||| Sbjct: 236620 cgggtggcggcctcggcggc 236639
>emb|AL445985.10| Human DNA sequence from clone RP11-45B20 on chromosome 13, complete sequence Length = 178531 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 aggtctcctacccgctgctgctct 129 |||| ||||||||||||||||||| Sbjct: 169791 aggtttcctacccgctgctgctct 169814
>gb|AE012106.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 14 of 460 of the complete genome Length = 13051 Score = 40.1 bits (20), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 383 ggtgagcacggtggccgncaacc 405 ||||||||||||||||| ||||| Sbjct: 4342 ggtgagcacggtggccgacaacc 4320
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcatcaccgtggacggcttc 164 |||||||||||||||||||| Sbjct: 1332030 tcatcaccgtggacggcttc 1332011
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gcacgggtggcggcctcggcggcg 335 |||| ||||||||||||||||||| Sbjct: 2557538 gcaccggtggcggcctcggcggcg 2557561
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 383 ggtgagcacggtggccgncaacc 405 ||||||||||||||||| ||||| Sbjct: 146493 ggtgagcacggtggccgacaacc 146471
>gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete sequence Length = 168829 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 gcattcccagcacgttctgggagt 198 ||||||||||||| |||||||||| Sbjct: 73355 gcattcccagcacattctgggagt 73378
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 330 gcggcggngatctcccccgcggc 352 ||||||| ||||||||||||||| Sbjct: 12404969 gcggcggagatctcccccgcggc 12404947
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tcatccttctcctctccaat 275 |||||||||||||||||||| Sbjct: 28010252 tcatccttctcctctccaat 28010233
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggtggcggcctcggcggcgg 336 |||||||||||||||||||| Sbjct: 40841909 ggtggcggcctcggcggcgg 40841928
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggtggcggcctcggcggcgg 336 |||||||||||||||||||| Sbjct: 144555 ggtggcggcctcggcggcgg 144574
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ggtggcggcctcggcggcgg 336 |||||||||||||||||||| Sbjct: 54015 ggtggcggcctcggcggcgg 54034
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_D04 Length = 143407 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 tcatccttctcctctccaat 275 |||||||||||||||||||| Sbjct: 99586 tcatccttctcctctccaat 99567
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1115_A07 Length = 165126 Score = 40.1 bits (20), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 330 gcggcggngatctcccccgcggc 352 ||||||| ||||||||||||||| Sbjct: 8998 gcggcggagatctcccccgcggc 8976
>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full insert sequence Length = 3858 Score = 40.1 bits (20), Expect = 5.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 330 gcggcggngatctcccccgcggc 352 ||||||| ||||||||||||||| Sbjct: 275 gcggcggagatctcccccgcggc 253
>gb|AC134445.3| Mus musculus BAC clone RP24-170M15 from 6, complete sequence Length = 165568 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gctgctcttcttctgtggga 141 |||||||||||||||||||| Sbjct: 52259 gctgctcttcttctgtggga 52240 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,677,119 Number of Sequences: 3902068 Number of extensions: 2677119 Number of successful extensions: 59495 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58600 Number of HSP's gapped (non-prelim): 895 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
