ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal29a20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene) Length = 1700 Score = 1138 bits (574), Expect = 0.0 Identities = 577/578 (99%) Strand = Plus / Plus Query: 6 gctagcagtgctaacacagtagtgtccatagttggacgaaactaatcaaacgaggggaga 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 gctagcagtgctaacacagtagtgtccatagttggacgaaactaatcaaacgaggggaga 77 Query: 66 attgaagagagacacgtcgatatgaagccctcgttcgtcactgctatagcggcactactc 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 attgaagagagacacgtcgatatgaagccctcgttcgtcactgctatagcggcactactc 137 Query: 126 ttgatagccgcacagcatgcctccatcgtcgccgccggcaaaggccccagggtcatcata 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 ttgatagccgcacagcatgcctccatcgtcgccgccggcaaaggccccagggtcatcata 197 Query: 186 gtcggcgccggcatgtccggtatctcggcggggaagcggctgtgggacgccggggtgagg 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 gtcggcgccggcatgtccggtatctcggcggggaagcggctgtgggacgccggggtgagg 257 Query: 246 gacctgctgatcctggaggcgacggaccgggtgggcgggcggatgcacaagcacaacttc 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 gacctgctgatcctggaggcgacggaccgggtgggcgggcggatgcacaagcacaacttc 317 Query: 306 ggcggcctcaacgtggagatcggcgccaactgggtggagggcctcaacggggacaagacc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 ggcggcctcaacgtggagatcggcgccaactgggtggagggcctcaacggggacaagacc 377 Query: 366 aaccccatctggcccatggtcaactccaccctcaagctcaggaacttctactccgacttc 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 aaccccatctggcccatggtcaactccaccctcaagctcaggaacttctactccgacttc 437 Query: 426 gacggcgtcgtcgccaacgtctacaaggagagcggtggcctctacgacgaggagttcgtg 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 gacggcgtcgtcgccaacgtctacaaggagagcggtggcctctacgacgaggagttcgtg 497 Query: 486 cagaagagaatggaccgcgccgacgaggtggaagagctgggcggcaagttcgccgcgaag 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 cagaagagaatggaccgcgccgacgaggtggaagagctgggcggcaagttcgccgcgaag 557 Query: 546 ttggatcccagcggccgcgacgacatcttcatcttggc 583 |||||||||||||||||||||||||||| ||||||||| Sbjct: 558 ttggatcccagcggccgcgacgacatctccatcttggc 595
>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase, exons 1-8 Length = 4217 Score = 504 bits (254), Expect = e-139 Identities = 254/254 (100%) Strand = Plus / Plus Query: 204 ggtatctcggcggggaagcggctgtgggacgccggggtgagggacctgctgatcctggag 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 292 ggtatctcggcggggaagcggctgtgggacgccggggtgagggacctgctgatcctggag 351 Query: 264 gcgacggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtggag 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 352 gcgacggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtggag 411 Query: 324 atcggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggcccatg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 412 atcggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggcccatg 471 Query: 384 gtcaactccaccctcaagctcaggaacttctactccgacttcgacggcgtcgtcgccaac 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 472 gtcaactccaccctcaagctcaggaacttctactccgacttcgacggcgtcgtcgccaac 531 Query: 444 gtctacaaggagag 457 |||||||||||||| Sbjct: 532 gtctacaaggagag 545 Score = 402 bits (203), Expect = e-109 Identities = 203/203 (100%) Strand = Plus / Plus Query: 6 gctagcagtgctaacacagtagtgtccatagttggacgaaactaatcaaacgaggggaga 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 gctagcagtgctaacacagtagtgtccatagttggacgaaactaatcaaacgaggggaga 77 Query: 66 attgaagagagacacgtcgatatgaagccctcgttcgtcactgctatagcggcactactc 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 attgaagagagacacgtcgatatgaagccctcgttcgtcactgctatagcggcactactc 137 Query: 126 ttgatagccgcacagcatgcctccatcgtcgccgccggcaaaggccccagggtcatcata 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 ttgatagccgcacagcatgcctccatcgtcgccgccggcaaaggccccagggtcatcata 197 Query: 186 gtcggcgccggcatgtccggtat 208 ||||||||||||||||||||||| Sbjct: 198 gtcggcgccggcatgtccggtat 220 Score = 246 bits (124), Expect = 7e-62 Identities = 127/128 (99%) Strand = Plus / Plus Query: 456 agcggtggcctctacgacgaggagttcgtgcagaagagaatggaccgcgccgacgaggtg 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 agcggtggcctctacgacgaggagttcgtgcagaagagaatggaccgcgccgacgaggtg 1091 Query: 516 gaagagctgggcggcaagttcgccgcgaagttggatcccagcggccgcgacgacatcttc 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1092 gaagagctgggcggcaagttcgccgcgaagttggatcccagcggccgcgacgacatctcc 1151 Query: 576 atcttggc 583 |||||||| Sbjct: 1152 atcttggc 1159
>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene) Length = 1583 Score = 311 bits (157), Expect = 1e-81 Identities = 284/325 (87%), Gaps = 6/325 (1%) Strand = Plus / Plus Query: 135 gcacagcatgcctccatcgtcgccgccggcaaaggccccagggtcatcatagtcggcgcc 194 ||||| ||||||||||| | |||||||| | ||||||||||||||||| ||||||||| Sbjct: 94 gcacaccatgcctccattgccgccgccgcc---ggccccagggtcatcatcgtcggcgcc 150 Query: 195 ggcatgtccggtatctcggcggggaagcggctgtgggacgccggggtgagggacctgctg 254 ||||||||||| |||||||||||||||||||| | ||| |||||| | | ||||||| || Sbjct: 151 ggcatgtccgggatctcggcggggaagcggctatcggaggccgggataacggacctggtg 210 Query: 255 atcctggaggcgacggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctc 314 ||||||||||||||||||| || |||||| ||||||||||||| | |||||||||| || Sbjct: 211 atcctggaggcgacggaccacgtcggcgggaggatgcacaagcagagcttcggcggcatc 270 Query: 315 aacgtggagatcggcgccaactgggtggagggcctcaacgg---ggacaagaccaacccc 371 ||||||||| ||||||||||||||||||||||| ||||||| | || || |||||| Sbjct: 271 aacgtggaggtcggcgccaactgggtggagggcgtcaacggcgccggcaggatgaacccc 330 Query: 372 atctggcccatggtcaactccaccctcaagctcaggaacttctactccgacttcgacggc 431 ||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 331 atctggcccctcgtcaactccaccctcaagctcaagaacttccgctccgacttcgacggc 390 Query: 432 gtcgtcgccaacgtctacaaggaga 456 ||| || ||||||||||||||||| Sbjct: 391 ctcgccgacaacgtctacaaggaga 415
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 244 bits (123), Expect = 3e-61 Identities = 221/253 (87%), Gaps = 3/253 (1%) Strand = Plus / Plus Query: 207 atctcggcggggaagcggctgtgggacgccggggtgagggacctgctgatcctggaggcg 266 |||||||||||||||||||| | ||| |||||| | | ||||||| |||||||||||||| Sbjct: 739 atctcggcggggaagcggctatcggaggccgggataacggacctggtgatcctggaggcg 798 Query: 267 acggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtggagatc 326 ||||||| || |||||| ||||||||||||| | |||||||||| ||||||||||| || Sbjct: 799 acggaccacgtcggcgggaggatgcacaagcagagcttcggcggcatcaacgtggaggtc 858 Query: 327 ggcgccaactgggtggagggcctcaacgg---ggacaagaccaaccccatctggcccatg 383 ||||||||||||||||||||| ||||||| | || || ||||||||||||||| | Sbjct: 859 ggcgccaactgggtggagggcgtcaacggcgccggcaggatgaaccccatctggcccctc 918 Query: 384 gtcaactccaccctcaagctcaggaacttctactccgacttcgacggcgtcgtcgccaac 443 |||||||||||||||||||||| ||||||| |||||||||||||||| ||| || |||| Sbjct: 919 gtcaactccaccctcaagctcaagaacttccgctccgacttcgacggcctcgccgacaac 978 Query: 444 gtctacaaggaga 456 ||||||||||||| Sbjct: 979 gtctacaaggaga 991 Score = 77.8 bits (39), Expect = 4e-11 Identities = 65/73 (89%), Gaps = 3/73 (4%) Strand = Plus / Plus Query: 135 gcacagcatgcctccatcgtcgccgccggcaaaggccccagggtcatcatagtcggcgcc 194 ||||| ||||||||||| | |||||||| | ||||||||||||||||| ||||||||| Sbjct: 557 gcacaccatgcctccattgccgccgccgcc---ggccccagggtcatcatcgtcggcgcc 613 Query: 195 ggcatgtccggta 207 ||||||||||||| Sbjct: 614 ggcatgtccggta 626
>dbj|AK068215.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146P22, full insert sequence Length = 910 Score = 242 bits (122), Expect = 1e-60 Identities = 221/254 (87%) Strand = Plus / Plus Query: 170 ccccagggtcatcatagtcggcgccggcatgtccggtatctcggcggggaagcggctgtg 229 ||||| ||||||||| |||||||||||||| ||||| ||||||||||| |||||||| | Sbjct: 161 ccccaaggtcatcatcgtcggcgccggcatatccgggatctcggcgggaaagcggctatc 220 Query: 230 ggacgccggggtgagggacctgctgatcctggaggcgacggaccgggtgggcgggcggat 289 ||| |||||| | | ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct: 221 ggaggccgggataaccgacgtgctgatcctggaggcgccggaccacgtcggcgggcggat 280 Query: 290 gcacaagcacaacttcggcggcctcaacgtggagatcggcgccaactgggtggagggcct 349 ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| | Sbjct: 281 gcacaagcagaacttcgacggcatcaacgtggagatcggcgccaactgggtggagggcgt 340 Query: 350 caacggggacaagaccaaccccatctggcccatggtcaactccaccctcaagctcaggaa 409 ||| || || |||| ||||| ||||||||| | ||||||||||| |||||||| ||||| Sbjct: 341 caatggcgaaaagatgaaccctatctggcccttcgtcaactccacgctcaagcttaggaa 400 Query: 410 cttctactccgact 423 |||| |||||||| Sbjct: 401 cttccgctccgact 414
>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO) Length = 1750 Score = 232 bits (117), Expect = 1e-57 Identities = 276/329 (83%) Strand = Plus / Plus Query: 168 ggccccagggtcatcatagtcggcgccggcatgtccggtatctcggcggggaagcggctg 227 ||||||||||||||| | ||||||||||||||||| || |||||||||| |||| ||||| Sbjct: 163 ggccccagggtcatcgtcgtcggcgccggcatgtctgggatctcggcggcgaagaggctg 222 Query: 228 tgggacgccggggtgagggacctgctgatcctggaggcgacggaccgggtgggcgggcgg 287 | ||| |||||| | | ||||||||||| ||||| |||||||||| | ||||||||| Sbjct: 223 tcggaggccgggataaccgacctgctgattctggaagcgacggaccacatcggcgggcgg 282 Query: 288 atgcacaagcacaacttcggcggcctcaacgtggagatcggcgccaactgggtggagggc 347 ||||||||| ||||||| |||| ||||||| ||| | ||||||||||||||||||||| Sbjct: 283 atgcacaagacgaacttcgccggcatcaacgtcgagttaggcgccaactgggtggagggc 342 Query: 348 ctcaacggggacaagaccaaccccatctggcccatggtcaactccaccctcaagctcagg 407 | ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||| | Sbjct: 343 gtgaacggcggcaagatgaaccccatctggcccatcgtcaactccaccctcaagctccgc 402 Query: 408 aacttctactccgacttcgacggcgtcgtcgccaacgtctacaaggagagcggtggcctc 467 |||||| ||||||||||||| | ||| ||||||||||||||| ||||||| || Sbjct: 403 aacttccgctccgacttcgactacctcgctcagaacgtctacaaggaggacggtggcgtc 462 Query: 468 tacgacgaggagttcgtgcagaagagaat 496 ||||| || || | ||| ||||||||||| Sbjct: 463 tacgatgaagattacgtccagaagagaat 491
>gb|AY107888.1| Zea mays PCO061908 mRNA sequence Length = 1895 Score = 232 bits (117), Expect = 1e-57 Identities = 276/329 (83%) Strand = Plus / Plus Query: 168 ggccccagggtcatcatagtcggcgccggcatgtccggtatctcggcggggaagcggctg 227 ||||||||||||||| | ||||||||||||||||| || |||||||||| |||| ||||| Sbjct: 170 ggccccagggtcatcgtcgtcggcgccggcatgtctgggatctcggcggcgaagaggctg 229 Query: 228 tgggacgccggggtgagggacctgctgatcctggaggcgacggaccgggtgggcgggcgg 287 | ||| |||||| | | ||||||||||| ||||| |||||||||| | ||||||||| Sbjct: 230 tcggaggccgggataaccgacctgctgattctggaagcgacggaccacatcggcgggcgg 289 Query: 288 atgcacaagcacaacttcggcggcctcaacgtggagatcggcgccaactgggtggagggc 347 ||||||||| ||||||| |||| ||||||| ||| | ||||||||||||||||||||| Sbjct: 290 atgcacaagacgaacttcgccggcatcaacgtcgagttaggcgccaactgggtggagggc 349 Query: 348 ctcaacggggacaagaccaaccccatctggcccatggtcaactccaccctcaagctcagg 407 | ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||| | Sbjct: 350 gtgaacggcggcaagatgaaccccatctggcccatcgtcaactccaccctcaagctccgc 409 Query: 408 aacttctactccgacttcgacggcgtcgtcgccaacgtctacaaggagagcggtggcctc 467 |||||| ||||||||||||| | ||| ||||||||||||||| ||||||| || Sbjct: 410 aacttccgctccgacttcgactacctcgctcagaacgtctacaaggaggacggtggcgtc 469 Query: 468 tacgacgaggagttcgtgcagaagagaat 496 ||||| || || | ||| ||||||||||| Sbjct: 470 tacgatgaagattacgtccagaagagaat 498
>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8 Length = 4096 Score = 178 bits (90), Expect = 1e-41 Identities = 189/222 (85%) Strand = Plus / Plus Query: 207 atctcggcggggaagcggctgtgggacgccggggtgagggacctgctgatcctggaggcg 266 |||||||||| |||| |||||| ||| |||||| | | ||||||||||| ||||| ||| Sbjct: 807 atctcggcggcgaagaggctgtcggaggccgggataaccgacctgctgattctggaagcg 866 Query: 267 acggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtggagatc 326 ||||||| | |||||||||||||||||| ||||||| |||| ||||||| ||| | Sbjct: 867 acggaccacatcggcgggcggatgcacaagacgaacttcgccggcatcaacgtcgagtta 926 Query: 327 ggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggcccatggtc 386 ||||||||||||||||||||| | ||||| | ||||| ||||||||||||||||| ||| Sbjct: 927 ggcgccaactgggtggagggcgtgaacggcggcaagatgaaccccatctggcccatcgtc 986 Query: 387 aactccaccctcaagctcaggaacttctactccgacttcgac 428 |||||||||||||||||| | |||||| ||||||||||||| Sbjct: 987 aactccaccctcaagctccgcaacttccgctccgacttcgac 1028 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 168 ggccccagggtcatcatagtcggcgccggcatgtccggta 207 ||||||||||||||| | ||||||||||||||||| |||| Sbjct: 650 ggccccagggtcatcgtcgtcggcgccggcatgtctggta 689
>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2 Length = 4344 Score = 178 bits (90), Expect = 1e-41 Identities = 189/222 (85%) Strand = Plus / Plus Query: 207 atctcggcggggaagcggctgtgggacgccggggtgagggacctgctgatcctggaggcg 266 |||||||||| |||| |||||| ||| |||||| | | ||||||||||| ||||| ||| Sbjct: 859 atctcggcggcgaagaggctgtcggaggccgggataaccgacctgctgattctggaagcg 918 Query: 267 acggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtggagatc 326 ||||||| | |||||||||||||||||| ||||||| |||| ||||||| ||| | Sbjct: 919 acggaccacatcggcgggcggatgcacaagacgaacttcgccggcatcaacgtcgagtta 978 Query: 327 ggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggcccatggtc 386 ||||||||||||||||||||| | ||||| | ||||| ||||||||||||||||| ||| Sbjct: 979 ggcgccaactgggtggagggcgtgaacggcggcaagatgaaccccatctggcccatcgtc 1038 Query: 387 aactccaccctcaagctcaggaacttctactccgacttcgac 428 |||||||||||||||||| | |||||| ||||||||||||| Sbjct: 1039 aactccaccctcaagctccgcaacttccgctccgacttcgac 1080 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 168 ggccccagggtcatcatagtcggcgccggcatgtccggta 207 ||||||||||||||| | ||||||||||||||||| |||| Sbjct: 703 ggccccagggtcatcgtcgtcggcgccggcatgtctggta 742
>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3 Length = 3384 Score = 170 bits (86), Expect = 3e-39 Identities = 188/222 (84%) Strand = Plus / Plus Query: 207 atctcggcggggaagcggctgtgggacgccggggtgagggacctgctgatcctggaggcg 266 |||||||||| |||| |||||| ||| |||||| | | ||||||||||| ||||| ||| Sbjct: 266 atctcggcggcgaagaggctgtcggaggccgggataaccgacctgctgattctggaagcg 325 Query: 267 acggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtggagatc 326 ||||| | | |||||||||||||||||| ||||||| |||| ||||||| ||| | Sbjct: 326 acggatcacatcggcgggcggatgcacaagacgaacttcgccggcatcaacgtcgagtta 385 Query: 327 ggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggcccatggtc 386 ||||||||||||||||||||| | ||||| | ||||| ||||||||||||||||| ||| Sbjct: 386 ggcgccaactgggtggagggcgtgaacggcggcaagatgaaccccatctggcccatcgtc 445 Query: 387 aactccaccctcaagctcaggaacttctactccgacttcgac 428 |||||||||||||||||| | |||||| ||||||||||||| Sbjct: 446 aactccaccctcaagctccgcaacttccgctccgacttcgac 487 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 168 ggccccagggtcatcatagtcggcgccggcatgtccggta 207 ||||||||||||||| | ||||||||||||||||| |||| Sbjct: 109 ggccccagggtcatcgtcgtcggcgccggcatgtctggta 148
>ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 167 bits (84), Expect = 5e-38 Identities = 266/326 (81%), Gaps = 3/326 (0%) Strand = Plus / Plus Query: 174 agggtcatcatagtcggcgccggcatgtccggtatctcggcggggaagcggctgtgggac 233 ||||||||||| || ||||| ||||| ||||||||||| |||||||||||| | ||||| Sbjct: 76 agggtcatcattgttggcgctggcatatccggtatctcagcggggaagcggatatgggag 135 Query: 234 gccggggtgagggacctgctgatcctggaggcgacggaccgggtgggcgggcggatgcac 293 || ||| | ||| | ||||| | |||||||| ||||| | ||||||||||||||| Sbjct: 136 gctgggatagcagacgtattgatcttagaggcgacagaccgcattggcgggcggatgcac 195 Query: 294 aagcacaacttcggcggcctcaacgtggagatcggcgccaactgggtggagggcctcaac 353 ||||| | |||| |||| |||| ||||||||||| |||||||||||||||||| |||| Sbjct: 196 aagcagagtttcgccggcgtcaatgtggagatcggtgccaactgggtggagggcgtcaat 255 Query: 354 ggggacaagaccaaccccatctggcccatggtcaactccaccctcaagctcaggaacttc 413 || || |||| |||||||| |||||||| ||||||||||||||||||||||| | |||| Sbjct: 256 ggcgaaaagaagaaccccatttggcccatcgtcaactccaccctcaagctcagaagcttc 315 Query: 414 tactccgacttcgacggcgtcgtcgccaacgtctacaaggagagcggtggcctctacgac 473 ||||||||| ||| || | | | |||||||||||||| ||| ||||||| ||| Sbjct: 316 cgctccgactttgacagccttgcccagaacgtctacaagga---cggaggcctctgtgac 372 Query: 474 gaggagttcgtgcagaagagaatgga 499 || | | |||||||||||||||||| Sbjct: 373 gaagcatacgtgcagaagagaatgga 398
>emb|AM231701.1| Hordeum vulgare pao2 gene, promoter region, cultivar Aura Length = 582 Score = 167 bits (84), Expect = 5e-38 Identities = 84/84 (100%) Strand = Plus / Plus Query: 6 gctagcagtgctaacacagtagtgtccatagttggacgaaactaatcaaacgaggggaga 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 gctagcagtgctaacacagtagtgtccatagttggacgaaactaatcaaacgaggggaga 558 Query: 66 attgaagagagacacgtcgatatg 89 |||||||||||||||||||||||| Sbjct: 559 attgaagagagacacgtcgatatg 582
>ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1588 Score = 165 bits (83), Expect = 2e-37 Identities = 212/255 (83%) Strand = Plus / Plus Query: 174 agggtcatcatagtcggcgccggcatgtccggtatctcggcggggaagcggctgtgggac 233 |||||||| || ||||||||||||| |||||||| || |||||||||||||||| ||| Sbjct: 109 agggtcataatcatcggcgccggcatatccggtatttcagcggggaagcggctgtcggag 168 Query: 234 gccggggtgagggacctgctgatcctggaggcgacggaccgggtgggcgggcggatgcac 293 || ||| | | |||| | ||||| | ||||| || |||| | ||||||||||||||| Sbjct: 169 gctgggataacggacatattgatcttagaggcaacagaccacattggcgggcggatgcac 228 Query: 294 aagcacaacttcggcggcctcaacgtggagatcggcgccaactgggtggagggcctcaac 353 || || | || | |||| |||| ||||||||||||||||| |||||||||||| |||| Sbjct: 229 aaacagaggtttgccggcgtcaatgtggagatcggcgccaattgggtggagggcgtcaat 288 Query: 354 ggggacaagaccaaccccatctggcccatggtcaactccaccctcaagctcaggaacttc 413 || || |||| |||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct: 289 ggtgagaagatgaaccccatttggcccatcgtcaactccaccctcaagcttaggaacttc 348 Query: 414 tactccgacttcgac 428 ||||||||||||| Sbjct: 349 ctctccgacttcgac 363
>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence Length = 1587 Score = 165 bits (83), Expect = 2e-37 Identities = 212/255 (83%) Strand = Plus / Plus Query: 174 agggtcatcatagtcggcgccggcatgtccggtatctcggcggggaagcggctgtgggac 233 |||||||| || ||||||||||||| |||||||| || |||||||||||||||| ||| Sbjct: 108 agggtcataatcatcggcgccggcatatccggtatttcagcggggaagcggctgtcggag 167 Query: 234 gccggggtgagggacctgctgatcctggaggcgacggaccgggtgggcgggcggatgcac 293 || ||| | | |||| | ||||| | ||||| || |||| | ||||||||||||||| Sbjct: 168 gctgggataacggacatattgatcttagaggcaacagaccacattggcgggcggatgcac 227 Query: 294 aagcacaacttcggcggcctcaacgtggagatcggcgccaactgggtggagggcctcaac 353 || || | || | |||| |||| ||||||||||||||||| |||||||||||| |||| Sbjct: 228 aaacagaggtttgccggcgtcaatgtggagatcggcgccaattgggtggagggcgtcaat 287 Query: 354 ggggacaagaccaaccccatctggcccatggtcaactccaccctcaagctcaggaacttc 413 || || |||| |||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct: 288 ggtgagaagatgaaccccatttggcccatcgtcaactccaccctcaagcttaggaacttc 347 Query: 414 tactccgacttcgac 428 ||||||||||||| Sbjct: 348 ctctccgacttcgac 362
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 143 bits (72), Expect = 7e-31 Identities = 141/164 (85%) Strand = Plus / Minus Query: 261 gaggcgacggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtg 320 |||||||| ||||| | |||||||||||||||||||| | |||| |||| |||| ||| Sbjct: 12097639 gaggcgacagaccgcattggcgggcggatgcacaagcagagtttcgccggcgtcaatgtg 12097580 Query: 321 gagatcggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggccc 380 |||||||| |||||||||||||||||| |||| || || |||| |||||||| |||||| Sbjct: 12097579 gagatcggtgccaactgggtggagggcgtcaatggcgaaaagaagaaccccatttggccc 12097520 Query: 381 atggtcaactccaccctcaagctcaggaacttctactccgactt 424 || ||||||||||||||||||||||| | |||| ||||||||| Sbjct: 12097519 atcgtcaactccaccctcaagctcagaagcttccgctccgactt 12097476 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Minus Query: 279 ggcgggcggatgcacaagcacaacttcggcggcctcaacgtggagatcggcgccaactgg 338 ||||||||||||||||| || | || | |||| |||| ||||||||||||||||| ||| Sbjct: 12121109 ggcgggcggatgcacaaacagaggtttgccggcgtcaatgtggagatcggcgccaattgg 12121050 Query: 339 gtggagggcctcaacggggacaagaccaaccccatctggcccatggtcaactccaccctc 398 ||||||||| |||| || || |||| |||||||| |||||||| ||||||||||||||| Sbjct: 12121049 gtggagggcgtcaatggtgagaagatgaaccccatttggcccatcgtcaactccaccctc 12120990 Query: 399 aagctcaggaacttctactccgacttcgac 428 ||||| ||||||||| ||||||||||||| Sbjct: 12120989 aagcttaggaacttcctctccgacttcgac 12120960
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 143 bits (72), Expect = 7e-31 Identities = 141/164 (85%) Strand = Plus / Minus Query: 261 gaggcgacggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtg 320 |||||||| ||||| | |||||||||||||||||||| | |||| |||| |||| ||| Sbjct: 9098 gaggcgacagaccgcattggcgggcggatgcacaagcagagtttcgccggcgtcaatgtg 9039 Query: 321 gagatcggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggccc 380 |||||||| |||||||||||||||||| |||| || || |||| |||||||| |||||| Sbjct: 9038 gagatcggtgccaactgggtggagggcgtcaatggcgaaaagaagaaccccatttggccc 8979 Query: 381 atggtcaactccaccctcaagctcaggaacttctactccgactt 424 || ||||||||||||||||||||||| | |||| ||||||||| Sbjct: 8978 atcgtcaactccaccctcaagctcagaagcttccgctccgactt 8935 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Minus Query: 279 ggcgggcggatgcacaagcacaacttcggcggcctcaacgtggagatcggcgccaactgg 338 ||||||||||||||||| || | || | |||| |||| ||||||||||||||||| ||| Sbjct: 32568 ggcgggcggatgcacaaacagaggtttgccggcgtcaatgtggagatcggcgccaattgg 32509 Query: 339 gtggagggcctcaacggggacaagaccaaccccatctggcccatggtcaactccaccctc 398 ||||||||| |||| || || |||| |||||||| |||||||| ||||||||||||||| Sbjct: 32508 gtggagggcgtcaatggtgagaagatgaaccccatttggcccatcgtcaactccaccctc 32449 Query: 399 aagctcaggaacttctactccgacttcgac 428 ||||| ||||||||| ||||||||||||| Sbjct: 32448 aagcttaggaacttcctctccgacttcgac 32419
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 143 bits (72), Expect = 7e-31 Identities = 141/164 (85%) Strand = Plus / Minus Query: 261 gaggcgacggaccgggtgggcgggcggatgcacaagcacaacttcggcggcctcaacgtg 320 |||||||| ||||| | |||||||||||||||||||| | |||| |||| |||| ||| Sbjct: 32018 gaggcgacagaccgcattggcgggcggatgcacaagcagagtttcgccggcgtcaatgtg 31959 Query: 321 gagatcggcgccaactgggtggagggcctcaacggggacaagaccaaccccatctggccc 380 |||||||| |||||||||||||||||| |||| || || |||| |||||||| |||||| Sbjct: 31958 gagatcggtgccaactgggtggagggcgtcaatggcgaaaagaagaaccccatttggccc 31899 Query: 381 atggtcaactccaccctcaagctcaggaacttctactccgactt 424 || ||||||||||||||||||||||| | |||| ||||||||| Sbjct: 31898 atcgtcaactccaccctcaagctcagaagcttccgctccgactt 31855 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Minus Query: 279 ggcgggcggatgcacaagcacaacttcggcggcctcaacgtggagatcggcgccaactgg 338 ||||||||||||||||| || | || | |||| |||| ||||||||||||||||| ||| Sbjct: 55488 ggcgggcggatgcacaaacagaggtttgccggcgtcaatgtggagatcggcgccaattgg 55429 Query: 339 gtggagggcctcaacggggacaagaccaaccccatctggcccatggtcaactccaccctc 398 ||||||||| |||| || || |||| |||||||| |||||||| ||||||||||||||| Sbjct: 55428 gtggagggcgtcaatggtgagaagatgaaccccatttggcccatcgtcaactccaccctc 55369 Query: 399 aagctcaggaacttctactccgacttcgac 428 ||||| ||||||||| ||||||||||||| Sbjct: 55368 aagcttaggaacttcctctccgacttcgac 55339
>gb|AY337514.1| Myxococcus xanthus isolate nla27 mutant NtrC-like activator gene, partial cds Length = 1521 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 507 gacgaggtggaagagctgggcgg 529 ||||||||||||||||||||||| Sbjct: 255 gacgaggtggaagagctgggcgg 233
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 256 tcctggaggcgacggaccgggtgggcgggcg 286 ||||||||||| |||||||||||||||||| Sbjct: 3263309 tcctggaggcgcgggaccgggtgggcgggcg 3263339
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 425 cgacggcgtcgtcgccaacgtctaca 450 ||||||||| |||||||||||||||| Sbjct: 2215483 cgacggcgtggtcgccaacgtctaca 2215508
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 425 cgacggcgtcgtcgccaacgtctaca 450 ||||||||| |||||||||||||||| Sbjct: 139447 cgacggcgtggtcgccaacgtctaca 139472
>ref|XM_683568.1| PREDICTED: Danio rerio similar to Uromodulin precursor (Tamm-Horsfall urinary glycoprotein) (THP) (LOC560177), mRNA Length = 1766 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 209 ctcggcggggaagcggctgtgg 230 |||||||||||||||||||||| Sbjct: 236 ctcggcggggaagcggctgtgg 215
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 174 agggtcatcatagtcggcgccggca 198 |||||||||||| |||||||||||| Sbjct: 350204 agggtcatcataatcggcgccggca 350180
>ref|XM_463207.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2253 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 556 gcggccgcgacgacatcttcatctt 580 ||||||||||| ||||||||||||| Sbjct: 1772 gcggccgcgacaacatcttcatctt 1748
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 556 gcggccgcgacgacatcttcatctt 580 ||||||||||| ||||||||||||| Sbjct: 23422980 gcggccgcgacaacatcttcatctt 23422956
>gb|AE014307.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 4 of 11 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 catctggcccatggtcaactc 391 ||||||||||||||||||||| Sbjct: 184128 catctggcccatggtcaactc 184108
>emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on chromosome 13 Contains a novel gene and a TAR DNA binding protein (TARDBP) pseudogene, the 5' UTR of a novel gene (FLJ21007) and 2 CpG islands, complete sequence Length = 226860 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 tcggcggggaagcggctgtgg 230 ||||||||||||||||||||| Sbjct: 206572 tcggcggggaagcggctgtgg 206592
>emb|AL136524.24| Human DNA sequence from clone RP11-78L19 on chromosome 13q14.3-21.2, complete sequence Length = 181541 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 catctggcccatggtcaactc 391 ||||||||||||||||||||| Sbjct: 78851 catctggcccatggtcaactc 78831
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 aacgtggagatcggcgccaac 335 ||||||||||||||||||||| Sbjct: 2665265 aacgtggagatcggcgccaac 2665245
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 556 gcggccgcgacgacatcttcatctt 580 ||||||||||| ||||||||||||| Sbjct: 23416008 gcggccgcgacaacatcttcatctt 23415984
>gb|AC097280.8| Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence Length = 129647 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 556 gcggccgcgacgacatcttcatctt 580 ||||||||||| ||||||||||||| Sbjct: 105636 gcggccgcgacaacatcttcatctt 105612
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 410 cttctactccgacttcgacggcgtcgtcg 438 |||| |||||| ||||||||||||||||| Sbjct: 140577 cttcaactccgccttcgacggcgtcgtcg 140549
>dbj|AK108660.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F01, full insert sequence Length = 1469 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 556 gcggccgcgacgacatcttcatctt 580 ||||||||||| ||||||||||||| Sbjct: 707 gcggccgcgacaacatcttcatctt 683
>emb|BX537910.1|HSM806019 Homo sapiens mRNA; cDNA DKFZp686M23105 (from clone DKFZp686M23105); complete cds Length = 3030 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 tcggcggggaagcggctgtgg 230 ||||||||||||||||||||| Sbjct: 44 tcggcggggaagcggctgtgg 64
>gb|AY131228.1| Streptomyces tenebrarius H6 AprG1 (aprg1), AprG2 (aprg2), and AprM (aprm) genes, complete cds Length = 3764 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 cctctacgacgaggagttcg 483 |||||||||||||||||||| Sbjct: 2339 cctctacgacgaggagttcg 2358
>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence Length = 205869 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 ccaccctcaagctcaggaac 410 |||||||||||||||||||| Sbjct: 15746 ccaccctcaagctcaggaac 15765
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 gtcggcgccggcatgtccggtatc 209 |||||||||||| ||||||||||| Sbjct: 1103216 gtcggcgccggcctgtccggtatc 1103193
>dbj|AP008931.1| Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence Length = 271577 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tcgtcgccgccggcaaaggc 170 |||||||||||||||||||| Sbjct: 265431 tcgtcgccgccggcaaaggc 265450
>gb|AF399008.1|AF399008 Giardia intestinalis strain WB1267 cysteine protease gene, complete cds Length = 3205 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 cctctacgacgaggagttcg 483 |||||||||||||||||||| Sbjct: 840 cctctacgacgaggagttcg 859
>gb|S67840.1| elastinolytic serine proteinase [Aspergillus flavus, 28, Genomic, 2955 nt] Length = 2955 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 tccatcgtcgccgccggcaa 166 |||||||||||||||||||| Sbjct: 1660 tccatcgtcgccgccggcaa 1679
>gb|AC020763.6| Homo sapiens chromosome 16 clone RP11-394B2, complete sequence Length = 200838 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 gggtgagggacctgctgatcctgg 261 |||||||||||||||| ||||||| Sbjct: 66058 gggtgagggacctgctaatcctgg 66081
>gb|AE005096.1| Halobacterium sp. NRC-1 section 127 of 170 of the complete genome Length = 13184 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 cgacttcgacggcgtcgtcg 438 |||||||||||||||||||| Sbjct: 11310 cgacttcgacggcgtcgtcg 11329
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gctgtgggacgccggggtga 243 |||||||||||||||||||| Sbjct: 3513310 gctgtgggacgccggggtga 3513291
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 tcgtcgccgccggcaaaggcccca 174 |||||||||||||| ||||||||| Sbjct: 1839772 tcgtcgccgccggcgaaggcccca 1839749 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 acgtggagatcggcgccaac 335 |||||||||||||||||||| Sbjct: 1515227 acgtggagatcggcgccaac 1515246
>gb|U49835.1|HSU49835 Human YKL-39 precursor mRNA, complete cds Length = 1418 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 acctgctgatcctggaggcg 266 |||||||||||||||||||| Sbjct: 991 acctgctgatcctggaggcg 972
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 259 tggaggcgacggaccgggtgggcgggcg 286 ||||||| || ||||||||||||||||| Sbjct: 933011 tggaggccaccgaccgggtgggcgggcg 932984
>gb|L08473.1|ASNELSTS Aspergillus flavus elastase gene, complete cds Length = 2955 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 tccatcgtcgccgccggcaa 166 |||||||||||||||||||| Sbjct: 1660 tccatcgtcgccgccggcaa 1679 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,729,486 Number of Sequences: 3902068 Number of extensions: 3729486 Number of successful extensions: 73055 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71741 Number of HSP's gapped (non-prelim): 1301 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
