| Clone Name | baal28j19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197476.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.10), mRNA Length = 1008 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 105 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 156
>ref|NM_197445.1| Oryza sativa (japonica cultivar-group) putative glutathione S-transferase (OSJNBb0005J14.12), mRNA Length = 699 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 49 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 100
>gb|AF309379.1| Oryza sativa (japonica cultivar-group) clone S2148_A putative glutathione S-transferase OsGSTU3 mRNA, complete cds Length = 947 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 116 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 167
>gb|AY271620.1| Oryza sativa (indica cultivar-group) tau class GST protein 3 mRNA, complete cds Length = 943 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 105 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 156
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 67660 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 67609
>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete sequence Length = 132900 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 125961 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 125910
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 20040530 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 20040581 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 19918794 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 19918845
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 67249 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 67198
>dbj|AK073944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071L17, full insert sequence Length = 928 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 117 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 168
>dbj|AK061304.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H02, full insert sequence Length = 929 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 116 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 167
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 20051806 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 20051857 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358 |||||||||||||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct: 19930070 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 19930121
>gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, complete sequence Length = 196709 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 aagaagtggcaggaggggaaga 269 |||||||||||||||||||||| Sbjct: 118148 aagaagtggcaggaggggaaga 118169
>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence Length = 366816 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgtaccctcgtcctccacca 217 |||||||||||||||||||| Sbjct: 253589 cgtaccctcgtcctccacca 253570
>emb|AL645966.30| Mouse DNA sequence from clone DN-144H19 on chromosome 3 Contains the 3' end of the Il21 gene for interleukin 21, a novel pseudogene (D530049N12RIK), a novel gene (C030047M16RIK), the Il2 gene for interleukin 2, the Tenr gene for testis nuclear RNA binding protein, a NADH dehydrogenase subunit 5 (ND5) pseudogene and a putative S1 RNA binding domain protein (PS1D) (2810055E05RIK) pseudogene, complete sequence Length = 161393 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gaggaagaagtggcaggagg 263 |||||||||||||||||||| Sbjct: 21952 gaggaagaagtggcaggagg 21971
>dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-100P11, complete sequence Length = 176129 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 agctcctggggacatggagg 303 |||||||||||||||||||| Sbjct: 92757 agctcctggggacatggagg 92738 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,916,274 Number of Sequences: 3902068 Number of extensions: 1916274 Number of successful extensions: 30561 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30474 Number of HSP's gapped (non-prelim): 87 length of query: 358 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 336 effective length of database: 17,147,199,772 effective search space: 5761459123392 effective search space used: 5761459123392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)