ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal28j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197476.1| Oryza sativa (japonica cultivar-group) putative... 56 8e-05
2ref|NM_197445.1| Oryza sativa (japonica cultivar-group) putative... 56 8e-05
3gb|AF309379.1| Oryza sativa (japonica cultivar-group) clone S214... 56 8e-05
4gb|AY271620.1| Oryza sativa (indica cultivar-group) tau class GS... 56 8e-05
5gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 geno... 56 8e-05
6gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 geno... 56 8e-05
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
8gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 gen... 56 8e-05
9dbj|AK073944.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
10dbj|AK061304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 8e-05
12gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, com... 44 0.30
13gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete se... 40 4.8
14emb|AL645966.30| Mouse DNA sequence from clone DN-144H19 on chro... 40 4.8
15dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.8

>ref|NM_197476.1| Oryza sativa (japonica cultivar-group) putative glutathione
           S-transferase (OSJNBb0038A07.10), mRNA
          Length = 1008

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
           |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 105 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 156



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>ref|NM_197445.1| Oryza sativa (japonica cultivar-group) putative glutathione
           S-transferase (OSJNBb0005J14.12), mRNA
          Length = 699

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
           |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 49  ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 100



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>gb|AF309379.1| Oryza sativa (japonica cultivar-group) clone S2148_A putative
           glutathione S-transferase OsGSTU3 mRNA, complete cds
          Length = 947

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
           |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 116 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 167



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>gb|AY271620.1| Oryza sativa (indica cultivar-group) tau class GST protein 3 mRNA,
           complete cds
          Length = 943

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
           |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 105 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 156



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>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete
             sequence
          Length = 148611

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 307   ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
             |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 67660 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 67609



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>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete
              sequence
          Length = 132900

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                  
Query: 307    ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
              |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 125961 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 125910



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 307      ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
                |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 20040530 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 20040581



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 307      ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
                |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 19918794 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 19918845



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>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete
             sequence
          Length = 116932

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 307   ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
             |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 67249 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 67198



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>dbj|AK073944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071L17, full
           insert sequence
          Length = 928

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
           |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 117 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 168



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>dbj|AK061304.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H02, full
           insert sequence
          Length = 929

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 307 ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
           |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 116 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 167



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 307      ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
                |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 20051806 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 20051857



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 307      ccgttcgcgctgcgagtgaggctagcgctcaacttcaaaggcttgagctacg 358
                |||||||||||||||| || ||| ||||||| |||||| ||| |||||||||
Sbjct: 19930070 ccgttcgcgctgcgagcgaagctcgcgctcagcttcaagggcctgagctacg 19930121



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>gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, complete sequence
          Length = 196709

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 248    aagaagtggcaggaggggaaga 269
              ||||||||||||||||||||||
Sbjct: 118148 aagaagtggcaggaggggaaga 118169



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>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence
          Length = 366816

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    cgtaccctcgtcctccacca 217
              ||||||||||||||||||||
Sbjct: 253589 cgtaccctcgtcctccacca 253570



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>emb|AL645966.30| Mouse DNA sequence from clone DN-144H19 on chromosome 3 Contains the 3'
             end of the Il21 gene for interleukin 21, a novel
             pseudogene (D530049N12RIK), a novel gene (C030047M16RIK),
             the Il2 gene for interleukin 2, the Tenr gene for testis
             nuclear RNA binding protein, a NADH dehydrogenase subunit
             5 (ND5) pseudogene and a putative S1 RNA binding domain
             protein (PS1D) (2810055E05RIK) pseudogene, complete
             sequence
          Length = 161393

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   gaggaagaagtggcaggagg 263
             ||||||||||||||||||||
Sbjct: 21952 gaggaagaagtggcaggagg 21971



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>dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-100P11, complete
             sequence
          Length = 176129

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   agctcctggggacatggagg 303
             ||||||||||||||||||||
Sbjct: 92757 agctcctggggacatggagg 92738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,916,274
Number of Sequences: 3902068
Number of extensions: 1916274
Number of successful extensions: 30561
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30474
Number of HSP's gapped (non-prelim): 87
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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