ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal28j15 |
|---|---|
| Clone Library Name | barley_pub |
>PROB_BURPS (Q63QM1) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 372 Score = 32.0 bits (71), Expect = 0.70 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = -2 Query: 376 DADG*PYGAAGRGVEDVGGAVGPLHVVGRVAGELAADEVQVTAAGPVVVEVDELQAAAAL 197 D G + A GR + G V V+ A+ +Q E+DELQAAAA+ Sbjct: 23 DGRGLDHDAIGRWAAQIAALRGAGKEVVLVSSGAIAEGMQRLGWSKRPREIDELQAAAAV 82 Query: 196 GQVG 185 GQ+G Sbjct: 83 GQMG 86
>PROB_BURP1 (Q3JNG1) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 372 Score = 32.0 bits (71), Expect = 0.70 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = -2 Query: 376 DADG*PYGAAGRGVEDVGGAVGPLHVVGRVAGELAADEVQVTAAGPVVVEVDELQAAAAL 197 D G + A GR + G V V+ A+ +Q E+DELQAAAA+ Sbjct: 23 DGRGLDHDAIGRWAAQIAALRGAGKEVVLVSSGAIAEGMQRLGWSKRPREIDELQAAAAV 82 Query: 196 GQVG 185 GQ+G Sbjct: 83 GQMG 86
>PROB_BURMA (Q62GV5) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 372 Score = 32.0 bits (71), Expect = 0.70 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = -2 Query: 376 DADG*PYGAAGRGVEDVGGAVGPLHVVGRVAGELAADEVQVTAAGPVVVEVDELQAAAAL 197 D G + A GR + G V V+ A+ +Q E+DELQAAAA+ Sbjct: 23 DGRGLDHDAIGRWAAQIAALRGAGKEVVLVSSGAIAEGMQRLGWSKRPREIDELQAAAAV 82 Query: 196 GQVG 185 GQ+G Sbjct: 83 GQMG 86
>PROB_BURS3 (Q39JU6) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 372 Score = 30.4 bits (67), Expect = 2.0 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -2 Query: 376 DADG*PYGAAGRGVEDVGGAVGPLHVVGRVAGELAADEVQVTAAGPVVVEVDELQAAAAL 197 D G + A GR + V V+ A+ +Q E+DELQAAAA+ Sbjct: 23 DGKGLDHAAIGRWAAQIAALRAQGKEVVLVSSGAIAEGMQRLGWSKRPREIDELQAAAAV 82 Query: 196 GQVG 185 GQ+G Sbjct: 83 GQMG 86
>Y169_METJA (Q57633) Hypothetical ATP-binding protein MJ0169| Length = 263 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%) Frame = -2 Query: 307 LHVVGRVAGELAADEVQVTAAGPVVVEV--DELQAAAAL 197 L+ VGR GE+ DE+++ G V+VEV DE +AAL Sbjct: 170 LNRVGRDFGEMGRDEIEMLIKGKVLVEVPEDENVRSAAL 208
>LDLR_RAT (P35952) Low-density lipoprotein receptor precursor (LDL receptor)| Length = 879 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +2 Query: 254 NLNLIRSQLSGDPTYDVEWTNGTSYIFDSASCRTIRLPVGVLPPDWLHGAVY 409 N + S LS Y GTS +D+ + P G L DW+HG +Y Sbjct: 439 NNRIYWSDLSQRKIYSAVMDQGTSLSYDAIISGDLHAPDG-LAVDWIHGNIY 489
>METE_VIBPA (Q87NA1) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 760 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +2 Query: 254 NLNLIRSQLSGDPTYDVEWTNGTSYIFDSASCRTIRLPVGVLPPDWLHGAVYLGRETTDG 433 N + I + S D T++V W I ++ PV + P +L YLG+E +G Sbjct: 123 NYHYIVPEFSKDDTFEVSWPQLFEEINEAVQAGHKVKPVLLGPVSYL----YLGKEVEEG 178 Query: 434 FD 439 FD Sbjct: 179 FD 180
>Y2440_MYCBO (P67369) Hypothetical UPF0230 protein Mb2440c| Length = 280 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -2 Query: 343 RGVEDVGG-AVGPLHVVGRVAGELAADEVQVTAAGPVVVEVDELQAAAALG 194 R + D GG V +H+ ++G A E+ GP V +D AA +G Sbjct: 69 RALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVG 119
>Y2417_MYCTU (P67368) Hypothetical UPF0230 protein Rv2417c/MT2490| Length = 280 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -2 Query: 343 RGVEDVGG-AVGPLHVVGRVAGELAADEVQVTAAGPVVVEVDELQAAAALG 194 R + D GG V +H+ ++G A E+ GP V +D AA +G Sbjct: 69 RALADSGGDGVVAVHISSALSGTFRAAELTAAELGPAVRVIDSRSAAMGVG 119
>METE_VIBVY (Q7MJM6) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 778 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +2 Query: 254 NLNLIRSQLSGDPTYDVEWTNGTSYIFDSASCRTIRLPVGVLPPDWLHGAVYLGRETTDG 433 N + I + S + T++V W + ++ PV + P +L YLG+E DG Sbjct: 123 NYHYIVPEFSKEDTFEVSWPQLFEEVNEAVQAGHKVKPVLLGPLSYL----YLGKEIEDG 178 Query: 434 FD 439 FD Sbjct: 179 FD 180
>METE_VIBVU (Q8CWK1) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 778 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/62 (29%), Positives = 29/62 (46%) Frame = +2 Query: 254 NLNLIRSQLSGDPTYDVEWTNGTSYIFDSASCRTIRLPVGVLPPDWLHGAVYLGRETTDG 433 N + I + S + T++V W + ++ PV + P +L YLG+E DG Sbjct: 123 NYHYIVPEFSKEDTFEVSWPQLFEEVNEAVQAGHNVKPVLLGPLSYL----YLGKEIEDG 178 Query: 434 FD 439 FD Sbjct: 179 FD 180 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.131 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,567,610 Number of Sequences: 219361 Number of extensions: 677255 Number of successful extensions: 2206 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2206 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
