ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal28j07 |
|---|---|
| Clone Library Name | barley_pub |
>PSAH_HORVU (P20143) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 143 Score = 164 bits (415), Expect = 2e-40 Identities = 80/95 (84%), Positives = 80/95 (84%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYGEKSVYFDLDDIANTTGQWDLYGSDA SPYNGLQSKFFNTFAAPFTKR Sbjct: 49 KYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIG 108 Query: 244 XXXXVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 348 VAYVSASASPDLLPIKKGPQLPPTPGPRGKI Sbjct: 109 GGSLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 143
>PSAH_ORYSA (P22181) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein) Length = 142 Score = 152 bits (383), Expect = 8e-37 Identities = 74/95 (77%), Positives = 75/95 (78%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYGEKSVYFDL+DI NTTGQWDLY SDA SPYN LQSKFF TFA PFTKR Sbjct: 48 KYGEKSVYFDLEDIGNTTGQWDLYASDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLG 107 Query: 244 XXXXVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 348 VAYVSASASPDLLPIKKGPQLPPTPGPRGKI Sbjct: 108 GGSLVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 142
>PSAH_MAIZE (O65101) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 142 Score = 150 bits (378), Expect = 3e-36 Identities = 73/95 (76%), Positives = 75/95 (78%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYG+KSVYFDLDDI NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 48 KYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLG 107 Query: 244 XXXXVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 348 +AYVSASASPDLLPIKKGPQ PP PGPRGKI Sbjct: 108 GGSLLAYVSASASPDLLPIKKGPQEPPQPGPRGKI 142
>PSAH_SPIOL (P22179) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 144 Score = 134 bits (336), Expect = 2e-31 Identities = 64/95 (67%), Positives = 71/95 (74%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYG+KSVYFDL+DIANTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 50 KYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 109 Query: 244 XXXXVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 348 + YVSA+A D+LPI +GPQ PP GPRGKI Sbjct: 110 GGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGKI 144
>PSAH2_ARATH (Q9SUI6) Photosystem I reaction center subunit VI-2, chloroplast| precursor (PSI-H1) Length = 145 Score = 131 bits (329), Expect = 1e-30 Identities = 61/95 (64%), Positives = 72/95 (75%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYG+KSVYFDL+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 51 KYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110 Query: 244 XXXXVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 348 + YVSA+++ D+LPIK+GPQ PP GPRGK+ Sbjct: 111 GGSLLTYVSANSTGDVLPIKRGPQEPPKLGPRGKL 145
>PSAH_BRARA (O04006) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 145 Score = 130 bits (327), Expect = 2e-30 Identities = 62/95 (65%), Positives = 71/95 (74%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYG+KSVYFDL+D+ NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 51 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110 Query: 244 XXXXVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 348 + YVSAS++ D+LPIK+GPQ P GPRGK+ Sbjct: 111 GGSLLTYVSASSTGDVLPIKRGPQEKPKLGPRGKL 145
>PSAH1_ARATH (Q9SUI7) Photosystem I reaction center subunit VI-1, chloroplast| precursor (PSI-H1) Length = 145 Score = 129 bits (325), Expect = 4e-30 Identities = 60/95 (63%), Positives = 72/95 (75%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYG+KSVYFDL+D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR Sbjct: 51 KYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110 Query: 244 XXXXVAYVSASASPDLLPIKKGPQLPPTPGPRGKI 348 + YVSA+++ ++LPIK+GPQ PP GPRGK+ Sbjct: 111 GGSLLTYVSATSTGEVLPIKRGPQEPPKLGPRGKL 145
>PSAH_PEA (P20121) Photosystem I reaction center subunit VI (PSI-H)| (Light-harvesting complex I 11 kDa protein) (Fragment) Length = 36 Score = 69.7 bits (169), Expect = 5e-12 Identities = 30/36 (83%), Positives = 33/36 (91%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQ 171 KYG+KSVYFDL+DI NTTGQWDLYGSDA SPY+ LQ Sbjct: 1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36
>PSAH_CHLRE (P13352) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (P28 protein) Length = 130 Score = 65.5 bits (158), Expect = 1e-10 Identities = 37/95 (38%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +1 Query: 64 KYGEKSVYFDLDDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXX 243 KYGE S YFDL D+ NTTG WD+YG D Y Q+KFF ++R Sbjct: 31 KYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIISRRESLRALVALS 90 Query: 244 XXXXVAYVSASASPDL-LPIKKGPQLPPTPGPRGK 345 + + D LPI KGPQ T G GK Sbjct: 91 GIAAIVTYGLKGAKDADLPITKGPQ---TTGENGK 122
>PSAH_CUCSA (P42050) Photosystem I reaction center subunit VI, chloroplast| (PSI-H) (Photosystem I 7.6 kDa protein) (PS I subunit 9B) (Fragment) Length = 24 Score = 33.1 bits (74), Expect = 0.52 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = +1 Query: 67 YGEKSVYFDLDDIANTTGQWDLY 135 Y +KSVYFDL+D NT GQ Y Sbjct: 2 YXDKSVYFDLEDKGNTXGQXXXY 24
>DAPA_RICTY (Q9AKE4) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 294 Score = 32.0 bits (71), Expect = 1.2 Identities = 10/37 (27%), Positives = 21/37 (56%) Frame = +3 Query: 339 RQDLNLILASPRLVLVYHGSRLISWIGIGSPVSMSFC 449 ++D N++ + +VL +H +I WI + S ++ C Sbjct: 180 KEDFNILTGNDEVVLAFHAQGVIGWISVTSNIAPKIC 216
>DAPA_RICPR (O05969) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 294 Score = 30.0 bits (66), Expect = 4.4 Identities = 9/35 (25%), Positives = 19/35 (54%) Frame = +3 Query: 345 DLNLILASPRLVLVYHGSRLISWIGIGSPVSMSFC 449 D N++ + +VL +H ++ WI + S ++ C Sbjct: 182 DFNILTGNDEVVLAFHAQGVVGWISVTSNIAPKLC 216
>GP33_BPSP1 (P06226) Gene 33 protein| Length = 101 Score = 29.6 bits (65), Expect = 5.8 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 91 DLDDIANTTGQWDLYGSDAASPYNGLQSKF 180 +L+ + N T +D+Y S+A + GL++KF Sbjct: 7 ELEKVRNHTEDYDVYNSEAERTFRGLKAKF 36
>YBGQ_ECOLI (P75750) Hypothetical outer membrane usher protein ybgQ precursor| Length = 815 Score = 29.6 bits (65), Expect = 5.8 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +1 Query: 109 NTTGQWDLYGSDAASPYNGLQSKFFNTFAA 198 ++ G+WD+ G+ AAS Y+ + S + +F A Sbjct: 614 SSAGEWDISGTYAASDYSSVSSSWSGSFTA 643
>VE5_HPV33 (P06426) Probable protein E5| Length = 75 Score = 29.3 bits (64), Expect = 7.6 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 402 LISWIGIGSPVSMSFC*YLMLYL 470 L+ W+ +GSP+ + FC L LYL Sbjct: 37 LLLWVFVGSPLKIFFCYLLFLYL 59
>PARP2_MOUSE (O88554) Poly [ADP-ribose] polymerase 2 (EC 2.4.2.30) (PARP-2)| (NAD(+) ADP-ribosyltransferase 2) (Poly[ADP-ribose] synthetase 2) (pADPRT-2) (mPARP-2) Length = 559 Score = 28.9 bits (63), Expect = 9.9 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = +3 Query: 369 PRLVLVYHGSRLISWIGI 422 P +L++HGSRL +W+GI Sbjct: 397 PNRMLLWHGSRLSNWVGI 414
>DAPF_RALSO (Q8Y344) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 292 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = +3 Query: 306 GAPAAAHPGTTRQDLNLILASPRLVLVYHGSRLISWIGIGSPVSMS 443 GA AAA G R +L SP V + G I+W G G PV M+ Sbjct: 229 GACAAAVAGIRRG----LLDSPVKVTTHGGDLTIAWAGEGEPVMMT 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,339,269 Number of Sequences: 219361 Number of extensions: 1255324 Number of successful extensions: 4001 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3830 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4000 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
