>GAG_MLVHO (P21435) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 539

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
 Frame = -2

Query: 279 PQNTPSSMPNPWQRMTASWLGPFLPFWEKREATFLGDDAPP-------PPSSSITYTMLX 121
           P  TP+  P+P  ++ +   GP +          L DD PP       PP+   T TM  
Sbjct: 129 PALTPTKSPSPKTQVLSDDGGPLI--------DLLSDDPPPYRGPENQPPAGRPTTTM-- 178

Query: 120 XXXXXXXXXXSEDAQIPIRILEESGPLKILLRG 22
                      E  ++P+++ +E  P+   LRG
Sbjct: 179 ----------QEMPRLPLKVPQEPSPMASRLRG 201

>PURBB_XENLA (Q8AVS4) Transcriptional activator protein Pur-beta-B (Purine-rich|
           element binding protein B-B)
          Length = 327

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 89  EHLGQQGQDADESIVYVMDEEGGGGASSPRK 181
           EH  Q G  + E I     E+G GG   PR+
Sbjct: 90  EHYAQLGPSSPEQIAQASGEDGAGGPGGPRR 120

>PURBA_XENLA (Q6PAC9) Transcriptional activator protein Pur-beta-A (Purine-rich|
           element-binding protein B-A)
          Length = 322

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 89  EHLGQQGQDADESIVYVMDEEGGGGASSPRK 181
           EH  Q G  + E I     E+G GG   PR+
Sbjct: 90  EHYAQLGPSSPEQIAQASGEDGAGGPGGPRR 120

>HEM6_PROMP (Q7UZS3) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 342

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 74  ICASSEHLGQQGQDADESIVYVMDEEGGGGASSPRKVASLFSQKG 208
           IC   E++  + +  +ES    + EEGGGG S   K  S+F Q G
Sbjct: 24  ICKGLENIDGKAKFTEESW---LREEGGGGKSRVLKNGSIFEQAG 65

>TMG2_MOUSE (Q8R182) Transmembrane gamma-carboxyglutamic acid protein 2|
           precursor (Proline-rich Gla protein 2) (Proline-rich
           gamma-carboxyglutamic acid protein 2) (NEDD4 WW
           domain-binding protein 1)
          Length = 198

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 300 LPWPSNTPQNTPSSMPNPWQRMTASWLGPFLPFWEKREATFLGDDAPPPPSSSI 139
           +P    TPQ+ P              L P LP +E+  A     DAPPPP SS+
Sbjct: 155 IPLSPQTPQSPP--------------LPPGLPTYEQALAASGVHDAPPPPYSSL 194

>COLL4_MIMIV (Q5UPS7) Collagen-like protein 4|
          Length = 817

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +2

Query: 41  KGPDSSRILMGICASSEHLGQQGQDADESIVYVMDEEGGGGASSPRKVASLFSQKGKKG 217
           KG D ++ + G+  +  + G +G D D+ I  +  E G  G    +    +  +KG  G
Sbjct: 240 KGDDGTKGITGLKGTKGNSGSKGDDGDKGIQGLKGEFGTKGNVGDKGDTGINGEKGSDG 298

>SANT_PLAFV (P09593) S-antigen protein precursor|
          Length = 375

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 107 GQDADESIVYVMDEEGGGGASSPRKVASLFSQ--KGKKGPNQD 229
           GQD  +  V V  E+GG G+  P+      S+  KG  GP  +
Sbjct: 90  GQDGSDQEVKVQKEQGGPGSEGPKGTGGPGSEGPKGTGGPGSE 132

>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/67 (29%), Positives = 35/67 (52%)
 Frame = +2

Query: 35   IFKGPDSSRILMGICASSEHLGQQGQDADESIVYVMDEEGGGGASSPRKVASLFSQKGKK 214
            + +GPDSS IL       E++  +   + ++IV   + E GGGAS    ++   S + ++
Sbjct: 2693 LVQGPDSSGILKA--EDLENVSPEISPSSDNIVR-SEAELGGGASEDGHLSFTGSDRDQQ 2749

Query: 215  GPNQDAV 235
            GP +  V
Sbjct: 2750 GPGRGLV 2756

>ZN524_MOUSE (Q9D0B1) Zinc finger protein 524|
          Length = 321

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 206 PSGRRGRPPSSATT 165
           P GRRGRPP  ATT
Sbjct: 28  PRGRRGRPPGGATT 41

>TRPD_METMA (Q8PT97) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 370

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 143 DEEGGGGASSPRKVASLFSQKGKKGPNQDAVIL 241
           D +GG    + R +  +F  KG+KGP +D +IL
Sbjct: 263 DTKGGSPKENARDLLCIF--KGQKGPKRDLIIL 293

>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 291  PSNTPQNT-PSSMPNPWQRMTASWLGPFLPFWEKREATFLGDDAPPPPS 148
            PS+ P++  P ++P     + A+W G  +P      ++ LGD +P PPS
Sbjct: 1491 PSHCPEDDRPEAIPE-LHMVPAAWRGLEMPAPADDSSSSLGDVSPEPPS 1538


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,765,849
Number of Sequences: 219361
Number of extensions: 707183
Number of successful extensions: 3426
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)