ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal27n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mut... 30 5.4
2SUHW_DROVI (Q08876) Protein suppressor of hairy wing 30 5.4
3K1683_MACFA (Q8WNU4) Protein KIAA1683 homolog (Fragment) 29 9.2
4SIA4B_PANTR (Q6KB58) CMP-N-acetylneuraminate-beta-galactosamide-... 29 9.2
5SIA4B_HUMAN (Q16842) CMP-N-acetylneuraminate-beta-galactosamide-... 29 9.2

>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)|
          Length = 342

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 54  TGAPYPSRCLSGYPLEAETWPAAVRQSY 137
           TGA YP    SG+ LE + WP AV Q +
Sbjct: 294 TGAVYPKH--SGFCLETQNWPNAVNQPH 319



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>SUHW_DROVI (Q08876) Protein suppressor of hairy wing|
          Length = 899

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 23  RRKLETQARPYRCSLPISMF---IRLSS*GRDVAGGGAAELSGARCPRQIRAPGSESEYM 193
           R   +T  RPY CSL I  F    +L    +D      A  +   C R  R      E++
Sbjct: 512 RTHSKTHLRPYACSLCIQKFKTEKQLERHVKDHTRQKRASFACTECTRSFRTSALLKEHL 571

Query: 194 DSGEY 208
           D+G++
Sbjct: 572 DAGDH 576



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>K1683_MACFA (Q8WNU4) Protein KIAA1683 homolog (Fragment)|
          Length = 798

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 24/98 (24%), Positives = 39/98 (39%)
 Frame = +3

Query: 9   SLALDVGSSRPRRDLTGAPYPSRCLSGYPLEAETWPAAVRQSYQAQDAPDKSEHRDRRAS 188
           S+ + VGSS       G   P+R + G    A    A  R S   +  P   + R R  +
Sbjct: 667 SVVMLVGSSPRTCHTCGRTQPTRVVQGMGRGAGGPGAVSRASAYQRAVPSPRQPRRRDKA 726

Query: 189 TWILESTCRMIKSSSKLKTSQVQVRPTQVIQMARSWRG 302
              ++S  R  K   +++  Q+  +  Q      +WRG
Sbjct: 727 ATAIQSAWRGFKIRQQMRQQQMAAKMVQA-----TWRG 759



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>SIA4B_PANTR (Q6KB58) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,|
           3-sialyltransferase (EC 2.4.99.-) (Beta-galactoside
           alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
           (Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
           (ST3GalA.2) (SIAT4-B) (S
          Length = 350

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = -2

Query: 160 LSGASCA**LCRTAAGHVSASRG*PDKHRDG*GAPVRSRLGLELP 26
           LSG SCA   CR   G   AS    D H DG  +PV +R  ++LP
Sbjct: 65  LSGKSCA---CRRCMGDAGASDWF-DSHFDGNISPVWTRENMDLP 105



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>SIA4B_HUMAN (Q16842) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,|
           3-sialyltransferase (EC 2.4.99.-) (Beta-galactoside
           alpha-2,3-sialyltransferase) (Alpha 2,3-ST) (Gal-NAc6S)
           (Gal-beta-1,3-GalNAc-alpha-2,3-sialyltransferase)
           (ST3GalA.2) (SIAT4-B) (S
          Length = 350

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 20/45 (44%), Positives = 24/45 (53%)
 Frame = -2

Query: 160 LSGASCA**LCRTAAGHVSASRG*PDKHRDG*GAPVRSRLGLELP 26
           LSG SCA   CR   G   AS    D H DG  +PV +R  ++LP
Sbjct: 65  LSGKSCA---CRRCMGDAGASDWF-DSHFDGNISPVWTRENMDLP 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,012,402
Number of Sequences: 219361
Number of extensions: 1194163
Number of successful extensions: 3030
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3027
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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