ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal27n24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 113 bits (57), Expect = 6e-22 Identities = 91/101 (90%), Gaps = 1/101 (0%) Strand = Plus / Minus Query: 274 tgatccagatggcacgcagctggcgtggcagtacgatgaggagaacgaccgcctatacgt 333 |||||| || |||||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct: 110696 tgatcccgacggcacgcagctggcgtggcagtacgatgaggagacagaccgcatgtacgt 110637 Query: 334 gaactatctagaagactgaggccgtggtcgtgattgtgggc 374 |||||||| |||||| ||||| |||||||||||| |||||| Sbjct: 110636 gaactatccagaagattgagg-cgtggtcgtgatcgtgggc 110597 Score = 113 bits (57), Expect = 6e-22 Identities = 91/101 (90%), Gaps = 1/101 (0%) Strand = Plus / Minus Query: 274 tgatccagatggcacgcagctggcgtggcagtacgatgaggagaacgaccgcctatacgt 333 |||||| || |||||||||||||||||||||||||||||||||| |||||| | ||||| Sbjct: 70981 tgatcccgacggcacgcagctggcgtggcagtacgatgaggagacagaccgcatgtacgt 70922 Query: 334 gaactatctagaagactgaggccgtggtcgtgattgtgggc 374 |||||||| |||||| ||||| |||||||||||| |||||| Sbjct: 70921 gaactatccagaagattgagg-cgtggtcgtgatcgtgggc 70882 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 ||||||||||||||||| ||| ||| |||| || ||||||||| ||||||| |||||||| Sbjct: 112064 agcaccgggatcggagaacgaatacgtggagtcaggagagtacgtgcaggacgatcaaga 112005 Query: 226 gcagttccaagctgaagacatcacagg 252 | ||||||||||| || |||||||| Sbjct: 112004 accattccaagctgaggatatcacagg 111978 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 ||||||||||||||||| ||| ||| |||| || ||||||||| ||||||| |||||||| Sbjct: 72349 agcaccgggatcggagaacgaatacgtggagtcaggagagtacgtgcaggacgatcaaga 72290 Query: 226 gcagttccaagctgaagacatcacagg 252 | ||||||||||| || |||||||| Sbjct: 72289 accattccaagctgaggatatcacagg 72263
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 101 bits (51), Expect = 2e-18 Identities = 106/123 (86%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 252 gtacaggtacgcccgacgcaggtgatccagatggcacgcagctggcgtggcagtacgatg 311 |||||||||| || || ||| |||||| || ||||| |||||||||||||||||||| | Sbjct: 27217 gtacaggtaccccagagacagatgatcccgacggcactcagctggcgtggcagtacgacg 27276 Query: 312 aggagaacgaccgcctatacgtgaactatctagaagactgaggccgtggtcgtgattgtg 371 |||||| |||||||| |||||||||||| ||| |||||||| |||||||||||| ||| Sbjct: 27277 aggagacagaccgcctcgacgtgaactatccagaggactgagg-cgtggtcgtgatcgtg 27335 Query: 372 ggc 374 ||| Sbjct: 27336 ggc 27338 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 ||||||||||||||||| ||| ||| |||| || ||||||||| ||||||| || | ||| Sbjct: 25869 agcaccgggatcggagaacgaatacgtggagtcaggagagtacgtgcaggacgaaccaga 25928 Query: 226 gcagttccaagctgaagacatcacagg 252 | ||||||||||| || |||||||| Sbjct: 25929 accattccaagctgaggatatcacagg 25955
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 93.7 bits (47), Expect = 6e-16 Identities = 78/87 (89%), Gaps = 1/87 (1%) Strand = Plus / Minus Query: 281 gatggcacgcagctggcgtggcagtacgatgaggagaacgaccgcctatacgtgaactat 340 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| Sbjct: 162233 gatggcacgcagctggcgtggcagtacgatgaggagacagaccgcctgtacgtgagctat 162174 Query: 341 ctagaagactgaggccgtggtcgtgat 367 | | | || ||||| |||||||||||| Sbjct: 162173 ccacatgattgagg-cgtggtcgtgat 162148 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 247 cacaggtacaggtacgcccgacgcaggtgatccagatggcacgcagctggcgtggcagta 306 ||||||| ||||||| || || |||| |||||| || ||||||||||||||||||||||| Sbjct: 159004 cacaggttcaggtaccccagaggcagttgatcccgacggcacgcagctggcgtggcagta 158945 Query: 307 cgatgaggagaacgaccgcctatacgtgaactatc 341 ||| ||||||| ||||| ||| ||||||| ||||| Sbjct: 158944 cgacgaggagaccgaccacctgtacgtgagctatc 158910 Score = 91.7 bits (46), Expect = 2e-15 Identities = 98/114 (85%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 281 gatggcacgcagctggcgtggcagtacgatgaggagaacgaccgcctatacgtgaactat 340 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| Sbjct: 114456 gatggcacgcagctggcgtggcagtacgatgaggagacagaccgcctgtacgtgagctat 114397 Query: 341 ctagaagactgaggccgtggtcgtgattgtgggcgagcatgcgggatatcatag 394 | | | || ||||| ||||||| |||| ||||| |||| || ||||| ||||| Sbjct: 114396 ccacacgattgagg-cgtggtcctgatcatgggccagcaggcaggatagcatag 114344 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/126 (84%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 249 caggtacaggtacgcccgacgcaggtgatccagatggcacgcagctggcgtggcagtacg 308 |||| |||||||| || || |||| ||||| || ||||| ||||||||||||||||||| Sbjct: 63880 caggcacaggtaccccagaggcagaggatcccgacggcacccagctggcgtggcagtacg 63939 Query: 309 atgaggagaacgaccgcctatacgtgaactatctagaagactgaggccgtggtcgtgatt 368 | ||||||| || ||||| ||||||||||||| | | |||||| |||||||||||||| Sbjct: 63940 acgaggagacagatcgcctttacgtgaactatccataggactga-gccgtggtcgtgatc 63998 Query: 369 gtgggc 374 |||||| Sbjct: 63999 gtgggc 64004 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 247 cacaggtacaggtacgcccgacgcaggtgatccagatggcacgcagctggcgtggcagta 306 ||||||| ||||||| || || |||| |||||| |||||||| || |||||||||||||| Sbjct: 182064 cacaggttcaggtaccccagaggcagttgatcccgatggcacacaactggcgtggcagta 182005 Query: 307 cgatgaggagaacgaccgcctatacgtgaactatc 341 ||| ||||||| ||||| ||| ||||||| ||||| Sbjct: 182004 cgacgaggagaccgaccacctgtacgtgagctatc 181970 Score = 83.8 bits (42), Expect = 5e-13 Identities = 106/126 (84%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 249 caggtacaggtacgcccgacgcaggtgatccagatggcacgcagctggcgtggcagtacg 308 |||| |||||||| || || |||| ||||| || ||||| ||||||||||||||||||| Sbjct: 74685 caggcacaggtaccccagaggcagaggatcccgacggcacccagctggcgtggcagtacg 74744 Query: 309 atgaggagaacgaccgcctatacgtgaactatctagaagactgaggccgtggtcgtgatt 368 | ||||||| || ||||| || |||||||||| ||| |||||| |||||||| ||||| Sbjct: 74745 acgaggagacagatcgcctttatgtgaactatccagaggactga-gccgtggttgtgatc 74803 Query: 369 gtgggc 374 |||||| Sbjct: 74804 gtgggc 74809 Score = 73.8 bits (37), Expect = 5e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 ||||||||||||||||| ||||||| ||||||| ||||||||| ||||||| || ||||| Sbjct: 163613 agcaccgggatcggagaacgagtacgtggattcgggagagtacgtgcaggacgaacaaga 163554 Query: 226 gcagttccaagct 238 | ||||||||| Sbjct: 163553 acccttccaagct 163541 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 |||||||||| |||||| ||| ||| |||| || ||||||||| ||||||| |||| ||| Sbjct: 73335 agcaccgggagcggagaacgaatacgtggagtcaggagagtacgtgcaggacgatccaga 73394 Query: 226 gcagttccaagctgaagacatcacagg 252 | ||||||||||| ||||||||||| Sbjct: 73395 accattccaagctgaggacatcacagg 73421 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 |||||||||| |||||| ||| ||| |||| || ||||||||| ||||||| |||| ||| Sbjct: 62531 agcaccgggagcggagaacgaatacgtggagtcaggagagtacgtgcaggacgatccaga 62590 Query: 226 gcagttccaagctgaagacatcacagg 252 | ||||||||||| ||||||||||| Sbjct: 62591 accattccaagctgaggacatcacagg 62617 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 169 accgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaagagca 228 |||||||||||||| ||||||| ||||||| ||||||||| ||||||| || ||||| | Sbjct: 115833 accgggatcggagaacgagtacgtggattcgggagagtacgtgcaggacgaacaagaacc 115774 Query: 229 gttccaagct 238 ||||||||| Sbjct: 115773 cttccaagct 115764 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 |||||| |||||||||| ||||||| ||||| | ||||||||| ||||||| || ||||| Sbjct: 183404 agcaccaggatcggagaacgagtacgtggatacgggagagtacgtgcaggacgaacaaga 183345 Query: 226 gcagttccaagctga 240 | ||||||||||| Sbjct: 183344 acccttccaagctga 183330 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 166 agcaccgggatcggagagcgagtacatggattctggagagtacatgcaggatgatcaaga 225 |||||| |||||||||| ||||||| ||||| | ||||||||| ||||||| || ||||| Sbjct: 160344 agcaccaggatcggagaacgagtacgtggatacgggagagtacgtgcaggacgaacaaga 160285 Query: 226 gcagttccaagctga 240 | ||||||||||| Sbjct: 160284 acccttccaagctga 160270
>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence Length = 275646 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ctccttacccatctcgatgtt 81 ||||||||||||||||||||| Sbjct: 271150 ctccttacccatctcgatgtt 271170
>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence Length = 257203 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 ctccttacccatctcgatgtt 81 ||||||||||||||||||||| Sbjct: 112731 ctccttacccatctcgatgtt 112751
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 cgtggccggcggcggtgcggc 129 ||||||||||||||||||||| Sbjct: 3213453 cgtggccggcggcggtgcggc 3213433
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 201 gagagtacatgcaggatgatcaag 224 ||||||||||| |||||||||||| Sbjct: 18219 gagagtacatggaggatgatcaag 18196
>gb|AC090707.16| Homo sapiens chromosome 11, clone RP11-701I24, complete sequence Length = 185029 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cagtacgatgaggagaacga 321 |||||||||||||||||||| Sbjct: 172148 cagtacgatgaggagaacga 172167
>emb|AL110503.2|HSJ1100I6 Human DNA sequence from clone RP5-1100I6 on chromosome 20 Contains a novel gene, a novel gene (FLJ33581) and a CpG island, complete sequence Length = 161525 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gggatatcatagtcttttcc 402 |||||||||||||||||||| Sbjct: 32045 gggatatcatagtcttttcc 32026 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 gggatatcatagtcttttcc 402 |||||||||||||||||||| Sbjct: 32008 gggatatcatagtcttttcc 31989
>emb|AL645584.27| Mouse DNA sequence from clone RP23-280M7 on chromosome 1 Contains a novel gene and two CpG islands, complete sequence Length = 171382 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gctgaagacatcacaggtac 255 |||||||||||||||||||| Sbjct: 49723 gctgaagacatcacaggtac 49704
>gb|AC087279.10| Homo sapiens chromosome 11, clone RP11-559I10, complete sequence Length = 184523 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 cagtacgatgaggagaacga 321 |||||||||||||||||||| Sbjct: 113241 cagtacgatgaggagaacga 113222
>emb|BX465866.13| Mouse DNA sequence from clone RP23-128L16 on chromosome X, complete sequence Length = 62496 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ttgtcaatcttaatttatgt 520 |||||||||||||||||||| Sbjct: 15855 ttgtcaatcttaatttatgt 15836
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gagagtacatgcaggatgatcaag 224 ||||||||||| |||||||||||| Sbjct: 6868632 gagagtacatggaggatgatcaag 6868655
>emb|AL772339.5| Zebrafish DNA sequence from clone CH211-139K23, complete sequence Length = 166809 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 tatttgtcaatcttaattta 517 |||||||||||||||||||| Sbjct: 100849 tatttgtcaatcttaattta 100868
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gagagtacatgcaggatgatcaag 224 ||||||||||| |||||||||||| Sbjct: 6935099 gagagtacatggaggatgatcaag 6935122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,114,685 Number of Sequences: 3902068 Number of extensions: 4114685 Number of successful extensions: 70196 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70007 Number of HSP's gapped (non-prelim): 185 length of query: 530 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 507 effective length of database: 17,143,297,704 effective search space: 8691651935928 effective search space used: 8691651935928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
