>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                            
Query: 279      gcacccaagagctggtgctatgagatcatcatattcagcatcattaggatactcagctaa 338
                ||||||||||||  ||| | | ||||||||||||||||||   ||||||||  | |||||
Sbjct: 12100979 gcacccaagagccagtgttgtcagatcatcatattcagcaatgttaggatatgctgctaa 12101038

                                                                
Query: 339      tcctcttgattctgtgcctaaccatgagaggcagtctatggttgctcc 386
                 ||  ||||||||||| ||| ||||||| |||| | ||||| ||||||
Sbjct: 12101039 cccaattgattctgtgtctagccatgaggggcattttatggctgctcc 12101086



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 48       tttatgggaaagaagcaaagcttat 72
                ||||||||||||||||||| |||||
Sbjct: 12100744 tttatgggaaagaagcaaatcttat 12100768



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 329      actcagctaatcctcttgat 348
                ||||||||||||||||||||
Sbjct: 29106982 actcagctaatcctcttgat 29107001



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 125      tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 176
                |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 12100828 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 12100879

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                            
Query: 279      gcacccaagagctggtgctatgagatcatcatattcagcatcattaggatactcagctaa 338
                ||||||||||||  ||| | | ||||||||||||||||||   ||||||||  | |||||
Sbjct: 12097742 gcacccaagagccagtgttgtcagatcatcatattcagcaatgttaggatatgctgctaa 12097801

                                                                
Query: 339      tcctcttgattctgtgcctaaccatgagaggcagtctatggttgctcc 386
                 ||  ||||||||||| ||| ||||||| |||| | ||||| ||||||
Sbjct: 12097802 cccaattgattctgtgtctagccatgaggggcattttatggctgctcc 12097849



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 48       tttatgggaaagaagcaaagcttat 72
                ||||||||||||||||||| |||||
Sbjct: 12097507 tttatgggaaagaagcaaatcttat 12097531



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 329      actcagctaatcctcttgat 348
                ||||||||||||||||||||
Sbjct: 29198404 actcagctaatcctcttgat 29198423



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 125      tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 176
                |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 12097591 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 12097642

>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
              complete sequence
          Length = 144969

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                          
Query: 279    gcacccaagagctggtgctatgagatcatcatattcagcatcattaggatactcagctaa 338
              ||||||||||||  ||| | | ||||||||||||||||||   ||||||||  | |||||
Sbjct: 121559 gcacccaagagccagtgttgtcagatcatcatattcagcaatgttaggatatgctgctaa 121618

                                                              
Query: 339    tcctcttgattctgtgcctaaccatgagaggcagtctatggttgctcc 386
               ||  ||||||||||| ||| ||||||| |||| | ||||| ||||||
Sbjct: 121619 cccaattgattctgtgtctagccatgaggggcattttatggctgctcc 121666



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 48     tttatgggaaagaagcaaagcttat 72
              ||||||||||||||||||| |||||
Sbjct: 121324 tttatgggaaagaagcaaatcttat 121348



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                  
Query: 125    tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 176
              |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 121408 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 121459

>dbj|AK109510.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D09, full
           insert sequence
          Length = 1750

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                       
Query: 279 gcacccaagagctggtgctatgagatcatcatattcagcatcattaggatactcagctaa 338
           ||||||||||||  ||| | | ||||||||||||||||||   ||||||||  | |||||
Sbjct: 470 gcacccaagagccagtgttgtcagatcatcatattcagcaatgttaggatatgctgctaa 529

                                                           
Query: 339 tcctcttgattctgtgcctaaccatgagaggcagtctatggttgctcc 386
            ||  ||||||||||| ||| ||||||| |||| | ||||| ||||||
Sbjct: 530 cccaattgattctgtgtctagccatgaggggcattttatggctgctcc 577



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 48  tttatgggaaagaagcaaagcttat 72
           ||||||||||||||||||| |||||
Sbjct: 235 tttatgggaaagaagcaaatcttat 259



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 125 tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 176
           |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 319 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 370

>dbj|AK063486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C05, full
           insert sequence
          Length = 2003

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                       
Query: 279 gcacccaagagctggtgctatgagatcatcatattcagcatcattaggatactcagctaa 338
           ||||||||||||  ||| | | ||||||||||||||||||   ||||||||  | |||||
Sbjct: 492 gcacccaagagccagtgttgtcagatcatcatattcagcaatgttaggatatgctgctaa 551

                                                           
Query: 339 tcctcttgattctgtgcctaaccatgagaggcagtctatggttgctcc 386
            ||  ||||||||||| ||| ||||||| |||| | ||||| ||||||
Sbjct: 552 cccaattgattctgtgtctagccatgaggggcattttatggctgctcc 599



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 48  tttatgggaaagaagcaaagcttat 72
           ||||||||||||||||||| |||||
Sbjct: 257 tttatgggaaagaagcaaatcttat 281



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 125 tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 176
           |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 341 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 392

>ref|XM_517191.1| PREDICTED: Pan troglodytes similar to E-1 enzyme (LOC461214), mRNA
          Length = 1125

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 405 agatatcgaagtatttcaggcctt 428
           ||||||||||||||||||||||||
Sbjct: 45  agatatcgaagtatttcaggcctt 68

>dbj|AB072455.1| Coprinopsis cinerea mRNA for DNA ligase IV, complete cds
          Length = 3221

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 166  tctctgaaagaaaccttccat 186
            |||||||||||||||||||||
Sbjct: 1118 tctctgaaagaaaccttccat 1138

>dbj|AB098474.1| Coprinopsis cinerea mRNA for DNA ligase IV, complete cds
          Length = 3221

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 166  tctctgaaagaaaccttccat 186
            |||||||||||||||||||||
Sbjct: 1118 tctctgaaagaaaccttccat 1138

>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence
          Length = 205272

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    ggatactcagctaatcctct 344
              ||||||||||||||||||||
Sbjct: 191692 ggatactcagctaatcctct 191673

>gb|AF146793.2| Mus musculus Neuromedin U precursor (Nmu) gene, partial cds; PDCL2
              (Pdcl2) gene, partial cds; CLOCK (Clock) gene, complete
              cds; TPARDL (Tpardl) gene, complete cds; and SRD5A2L
              (Srd5a2l) gene, complete cds
          Length = 204618

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    ctggaggacacactgaggca 462
              ||||||||||||||||||||
Sbjct: 167384 ctggaggacacactgaggca 167365

>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map
             near C10769, complete sequence
          Length = 194856

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   actcagctaatcctcttgat 348
             ||||||||||||||||||||
Sbjct: 32309 actcagctaatcctcttgat 32290

>gb|AC147239.2| Mus musculus BAC clone RP23-386C10 from chromosome 5, complete sequence
          Length = 217470

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    ctggaggacacactgaggca 462
              ||||||||||||||||||||
Sbjct: 159037 ctggaggacacactgaggca 159018

>gb|AC161800.8| Mus musculus chromosome 7, clone RP23-340E19, complete sequence
          Length = 201173

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   cagcagggtttctggaggaa 136
             ||||||||||||||||||||
Sbjct: 85442 cagcagggtttctggaggaa 85423

>gb|AC093359.6| Mus musculus chromosome 7, clone RP23-57A19, complete sequence
          Length = 239361

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 329    actcagctaatcctcttgattctg 352
              ||||||||||| ||||||||||||
Sbjct: 158385 actcagctaatgctcttgattctg 158362

>ref|XM_813856.1| Trypanosoma cruzi strain CL Brener dynein heavy chain
            (Tc00.1047053508257.170) partial mRNA
          Length = 13809

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 563  atgtggttgctaaacaaaat 582
            ||||||||||||||||||||
Sbjct: 7549 atgtggttgctaaacaaaat 7568

>gb|AC137997.2| Oryza sativa chromosome 3 BAC OJ1499_D04 genomic sequence, complete
             sequence
          Length = 91084

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   actcagctaatcctcttgat 348
             ||||||||||||||||||||
Sbjct: 64394 actcagctaatcctcttgat 64375

>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete
              sequence
          Length = 168549

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    ctgccaaattctctgaaaga 176
              ||||||||||||||||||||
Sbjct: 146437 ctgccaaattctctgaaaga 146456

>emb|Z54073.2|HSN13E1 Human DNA sequence from clone LL22NC03-13E1 on chromosome 22 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 38761

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    tcctcacaacccaacccagg 30
             ||||||||||||||||||||
Sbjct: 35697 tcctcacaacccaacccagg 35716

>emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6,
             complete sequence
          Length = 209866

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gccaaattctctgaaagaaa 178
             ||||||||||||||||||||
Sbjct: 13883 gccaaattctctgaaagaaa 13864

>gb|AC068496.7| Mus musculus chromosome 3 clone RP23-75F13 clone RP23-75F13, complete
             sequence
          Length = 136268

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tgagacagtgtcacaacagc 120
             ||||||||||||||||||||
Sbjct: 14919 tgagacagtgtcacaacagc 14938

>gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ccttatatcagagtgcattt 264
             ||||||||||||||||||||
Sbjct: 57312 ccttatatcagagtgcattt 57331

>gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, complete sequence
          Length = 196087

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    tgagacagtgtcacaacagc 120
              ||||||||||||||||||||
Sbjct: 155479 tgagacagtgtcacaacagc 155460

>gb|AC079612.6| Homo sapiens BAC clone RP11-314A6 from 2, complete sequence
          Length = 118368

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 442  cctggaggacacactgaggc 461
            ||||||||||||||||||||
Sbjct: 7681 cctggaggacacactgaggc 7662

>gb|AC010980.8| Homo sapiens BAC clone RP11-384O8 from 2, complete sequence
          Length = 171374

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    gctcctcagtcatcagatat 410
              ||||||||||||||||||||
Sbjct: 117923 gctcctcagtcatcagatat 117942

>gb|AC025160.29| Homo sapiens 12 BAC RP11-526P6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159691

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 528   tcagatccagaatagcggtcctgc 551
             ||||| ||||||||||||||||||
Sbjct: 68936 tcagaaccagaatagcggtcctgc 68913

>gb|AC162875.3| Mus musculus chromosome 5, clone RP24-375D24, complete sequence
          Length = 143518

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   tggttgctaaacaaaatgaa 585
             ||||||||||||||||||||
Sbjct: 51097 tggttgctaaacaaaatgaa 51078

>gb|AC117831.6| Mus musculus chromosome 15, clone RP24-106E17, complete sequence
          Length = 173772

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   ggatactcagctaatcctct 344
             ||||||||||||||||||||
Sbjct: 18452 ggatactcagctaatcctct 18433

>gb|AC171179.2| Gallus gallus BAC clone CH261-31A13 from chromosome ul, complete
             sequence
          Length = 247380

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   gatatcgaagtatttcaggc 425
             ||||||||||||||||||||
Sbjct: 92712 gatatcgaagtatttcaggc 92731

>emb|AL049781.5|CNS00003 Human chromosome 14 DNA sequence BAC R-340L3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188165

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   ttctggtagtcagatccaga 538
             ||||||||||||||||||||
Sbjct: 55029 ttctggtagtcagatccaga 55048

>dbj|AP002490.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-849H4, complete
              sequence
          Length = 191986

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 465    ttggttcccaggttcagctg 484
              ||||||||||||||||||||
Sbjct: 175679 ttggttcccaggttcagctg 175660

>gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, complete sequence
          Length = 150428

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cagcagggtttctggaggaa 136
             ||||||||||||||||||||
Sbjct: 42025 cagcagggtttctggaggaa 42044

>gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone rp23-71e13, complete
             sequence
          Length = 213482

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tgagacagtgtcacaacagc 120
             ||||||||||||||||||||
Sbjct: 89411 tgagacagtgtcacaacagc 89430

>emb|AL672017.10| Mouse DNA sequence from clone RP23-306J24 on chromosome X, complete
             sequence
          Length = 199473

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 487   agtttatcagactacagggataac 510
             |||||| |||||||||||||||||
Sbjct: 38726 agtttagcagactacagggataac 38703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,470,483
Number of Sequences: 3902068
Number of extensions: 5470483
Number of successful extensions: 105825
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105628
Number of HSP's gapped (non-prelim): 197
length of query: 588
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 565
effective length of database: 17,143,297,704
effective search space: 9685963202760
effective search space used: 9685963202760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)