ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal27d21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
2dbj|AK066617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
3gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome... 94 4e-16
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
6gb|AY110802.1| Zea mays CL50258_1 mRNA sequence 94 4e-16
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 94 4e-16
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 94 4e-16
9emb|BX842244.3|CNS0B0PN Oryza sativa chromosome 12, . Partial se... 94 4e-16
10emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa... 94 4e-16
11gb|AY104972.1| Zea mays PCO068557 mRNA sequence 74 4e-10
12gb|BT017302.1| Zea mays clone EL01N0316C05.c mRNA sequence 70 6e-09
13gb|AY105262.1| Zea mays PCO087823 mRNA sequence 68 2e-08
14gb|U79961.1|ZMU79961 Zea mays vacuolar sorting receptor homolog ... 68 2e-08
15ref|XM_479541.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
16dbj|AK072667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
17gb|AF161719.1|AF161719 Triticum aestivum vacuolar targeting rece... 60 5e-06
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
19dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
20dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
21dbj|AB006809.1| Cucurbita cv. Kurokawa Amakuri mRNA for PV72, co... 46 0.082
22dbj|AK121413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
23dbj|AK111509.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
24dbj|AK098891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
25dbj|AK098846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
26emb|AL645682.14| Mouse DNA sequence from clone RP23-287B22 on ch... 42 1.3
27dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.3
28gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, c... 40 5.1
29gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, co... 40 5.1
30ref|XM_580994.2| PREDICTED: Bos taurus similar to nexilin (LOC50... 40 5.1
31gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.1
33emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, N... 40 5.1
34gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, c... 40 5.1
35gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
36gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chrom... 40 5.1
37dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
39gb|AC133522.3| Homo sapiens BAC clone RP11-1277J4 from 2, comple... 40 5.1
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.1 
>dbj|AK102691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103D10, full
            insert sequence
          Length = 2549

 Score =  107 bits (54), Expect = 3e-20
 Identities = 85/94 (90%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    ggatccggaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctgg 61
            ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 2021 ggatccggaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctgg 2080

                                              
Query: 62   agaaccagggagacattcacagtcatcctcacca 95
            | ||||| |||||  ||| || |||| |||||||
Sbjct: 2081 acaaccaaggagatgttcccaatcattctcacca 2114
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>dbj|AK066617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B02, full
            insert sequence
          Length = 2553

 Score =  107 bits (54), Expect = 3e-20
 Identities = 85/94 (90%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    ggatccggaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctgg 61
            ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 2082 ggatccggaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctgg 2141

                                              
Query: 62   agaaccagggagacattcacagtcatcctcacca 95
            | ||||| |||||  ||| || |||| |||||||
Sbjct: 2142 acaaccaaggagatgttcccaatcattctcacca 2175
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>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0004B05, complete sequence
          Length = 121223

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                         
Query: 10    gaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaacca 68
             |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 20615 gaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctggacaacca 20556

                                        
Query: 69    gggagacattcacagtcatcctcacca 95
              |||||  ||| || |||| |||||||
Sbjct: 20555 aggagatgttcccaatcattctcacca 20529
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                          
Query: 10     gaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaacca 68
              |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 783061 gaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctggacaacca 783002

                                         
Query: 69     gggagacattcacagtcatcctcacca 95
               |||||  ||| || |||| |||||||
Sbjct: 783001 aggagatgttcccaatcattctcacca 782975
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                          
Query: 10     gaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaacca 68
              |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 742322 gaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctggacaacca 742263

                                         
Query: 69     gggagacattcacagtcatcctcacca 95
               |||||  ||| || |||| |||||||
Sbjct: 742262 aggagatgttcccaatcattctcacca 742236
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>gb|AY110802.1| Zea mays CL50258_1 mRNA sequence
          Length = 661

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 93/107 (86%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggatccggaggtacatggatta-gagatccgcgccatcatggcgcagtacatgcccctgg 61
           ||||||||||||||||||| |  |||||||| ||||||||||| ||||||||||||||||
Sbjct: 329 ggatccggaggtacatggactccgagatccgtgccatcatggctcagtacatgcccctgg 270

                                                          
Query: 62  agaaccagggagacattcacagtcatcctcaccagattgagatgtga 108
           | ||||| |||||| | || || ||| |||| || ||||||||||||
Sbjct: 269 acaaccaaggagacgtccagagccattctcatcacattgagatgtga 223
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                          
Query: 10     gaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaacca 68
              |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 742324 gaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctggacaacca 742265

                                         
Query: 69     gggagacattcacagtcatcctcacca 95
               |||||  ||| || |||| |||||||
Sbjct: 742264 aggagatgttcccaatcattctcacca 742238
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                          
Query: 10     gaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaacca 68
              |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 783061 gaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctggacaacca 783002

                                         
Query: 69     gggagacattcacagtcatcctcacca 95
               |||||  ||| || |||| |||||||
Sbjct: 783001 aggagatgttcccaatcattctcacca 782975
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>emb|BX842244.3|CNS0B0PN Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23
            of library OSJNBb from chromosome 12 of cultivar
            Nipponbare of ssp. japonica of Oryza sativa (rice),
            complete sequence
          Length = 12281

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                        
Query: 10   gaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaacca 68
            |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 4833 gaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctggacaacca 4774

                                       
Query: 69   gggagacattcacagtcatcctcacca 95
             |||||  ||| || |||| |||||||
Sbjct: 4773 aggagatgttcccaatcattctcacca 4747
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>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa
           from chromosome 11 of cultivar Nipponbare of ssp.
           japonica of Oryza sativa (rice), complete sequence
          Length = 181322

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 78/87 (89%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaacca 68
           |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 650 gaggtacatggattcagagatccgcgccatcatggcccagtacatgcccctggacaacca 709

                                      
Query: 69  gggagacattcacagtcatcctcacca 95
            |||||  ||| || |||| |||||||
Sbjct: 710 aggagatgttcccaatcattctcacca 736
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>gb|AY104972.1| Zea mays PCO068557 mRNA sequence
          Length = 1725

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 56/61 (91%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                        
Query: 3    ggatccggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcccctgg 61
            ||||||||||||||||||| | | ||||||||||||||||||| ||||||||||| ||||
Sbjct: 1456 ggatccggaggtacatggactcggagatccgcgccatcatggcccagtacatgcctctgg 1515

             
Query: 62   a 62
            |
Sbjct: 1516 a 1516
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>gb|BT017302.1| Zea mays clone EL01N0316C05.c mRNA sequence
          Length = 622

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 51/55 (92%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                  
Query: 3   ggatccggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcc 56
           ||||||||||||||||||| | | ||||||||||||||||||| |||||||||||
Sbjct: 192 ggatccggaggtacatggactcggagatccgcgccatcatggcccagtacatgcc 246
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>gb|AY105262.1| Zea mays PCO087823 mRNA sequence
          Length = 1974

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 56/62 (90%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                        
Query: 8    cggaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaac 66
            ||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 1444 cggagttacatggattcagagatccgtgccatcatggctcagtacatgcctctggataac 1503

              
Query: 67   ca 68
            ||
Sbjct: 1504 ca 1505
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>gb|U79961.1|ZMU79961 Zea mays vacuolar sorting receptor homolog mRNA, partial cds
          Length = 822

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 56/62 (90%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   cggaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaac 66
           ||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 352 cggagttacatggattcagagatccgtgccatcatggctcagtacatgcctctggataac 411

             
Query: 67  ca 68
           ||
Sbjct: 412 ca 413
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>ref|XM_479541.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2450

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8    cggaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaa 65
            ||||| |||||||||| |||||| || || |||||||| ||||||||||||||||||||
Sbjct: 1970 cggagttacatggattcagagattcgtgcgatcatggctcagtacatgcccctggagaa 2028
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>dbj|AK072667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134F15, full
            insert sequence
          Length = 2450

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 53/59 (89%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8    cggaggtacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaa 65
            ||||| |||||||||| |||||| || || |||||||| ||||||||||||||||||||
Sbjct: 1970 cggagttacatggattcagagattcgtgcgatcatggctcagtacatgcccctggagaa 2028
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>gb|AF161719.1|AF161719 Triticum aestivum vacuolar targeting receptor bp-80 mRNA, complete
            cds
          Length = 2293

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 46/50 (92%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                              
Query: 8    cggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcc 56
            ||||| |||||||||| | ||||||||||||||||||| |||||||||||
Sbjct: 1825 cggagttacatggattcggagatccgcgccatcatggctcagtacatgcc 1874
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 48/53 (90%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                     
Query: 14       tacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaa 65
                |||||||||| |||||| || || |||||||| ||||||||||||||||||||
Sbjct: 28756432 tacatggattcagagattcgtgcgatcatggctcagtacatgcccctggagaa 28756380
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>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1205_F02
          Length = 112862

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 48/53 (90%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                  
Query: 14    tacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaa 65
             |||||||||| |||||| || || |||||||| ||||||||||||||||||||
Sbjct: 63993 tacatggattcagagattcgtgcgatcatggctcagtacatgcccctggagaa 63941
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>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008J01
          Length = 159900

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 48/53 (90%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                  
Query: 14    tacatggatt-agagatccgcgccatcatggcgcagtacatgcccctggagaa 65
             |||||||||| |||||| || || |||||||| ||||||||||||||||||||
Sbjct: 14118 tacatggattcagagattcgtgcgatcatggctcagtacatgcccctggagaa 14066
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>dbj|AB006809.1| Cucurbita cv. Kurokawa Amakuri mRNA for PV72, complete cds
          Length = 2190

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 60/71 (84%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                        
Query: 5    atccggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcccctggag 63
            ||||||||||| ||||||| | |||| || ||||||||||| || || |||||| |||| 
Sbjct: 1809 atccggaggtatatggattcggagatacgggccatcatggctcaatatatgcccttggac 1868

                       
Query: 64   aaccagggaga 74
            ||||| |||||
Sbjct: 1869 aaccaaggaga 1879
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>dbj|AK121413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A05, full
            insert sequence
          Length = 2546

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                              
Query: 8    cggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcc 56
            ||||| |||||||||| | |||| ||||| |||||||| |||||||||||
Sbjct: 2073 cggagctacatggattcggagattcgcgcgatcatggcccagtacatgcc 2122
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>dbj|AK111509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G14, full
            insert sequence
          Length = 2546

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                              
Query: 8    cggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcc 56
            ||||| |||||||||| | |||| ||||| |||||||| |||||||||||
Sbjct: 2073 cggagctacatggattcggagattcgcgcgatcatggcccagtacatgcc 2122
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>dbj|AK098891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M02, full
            insert sequence
          Length = 2508

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                              
Query: 8    cggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcc 56
            ||||| |||||||||| | |||| ||||| |||||||| |||||||||||
Sbjct: 2036 cggagctacatggattcggagattcgcgcgatcatggcccagtacatgcc 2085
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>dbj|AK098846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C17, full
            insert sequence
          Length = 2527

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 44/50 (88%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                              
Query: 8    cggaggtacatggattag-agatccgcgccatcatggcgcagtacatgcc 56
            ||||| |||||||||| | |||| ||||| |||||||| |||||||||||
Sbjct: 2025 cggagctacatggattcggagattcgcgcgatcatggcccagtacatgcc 2074
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>emb|AL645682.14| Mouse DNA sequence from clone RP23-287B22 on chromosome 11 Contains a
             CpG island, complete sequence
          Length = 198340

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 334   agtccaaagttcaaaatcatt 354
             |||||||||||||||||||||
Sbjct: 15533 agtccaaagttcaaaatcatt 15553
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>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218,
             complete sequence
          Length = 113213

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 34    gccatcatggcgcagtacatgcccctgga 62
             ||||||||||| |||||||||||| ||||
Sbjct: 50857 gccatcatggcacagtacatgcccttgga 50885
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>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence
          Length = 214202

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   accgttctgtaaatttctagatta 221
             ||||||||| ||||||||||||||
Sbjct: 27411 accgttctgaaaatttctagatta 27434
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>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence
          Length = 186115

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   accgttctgtaaatttctagatta 221
             ||||||||| ||||||||||||||
Sbjct: 45136 accgttctgaaaatttctagatta 45113
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>ref|XM_580994.2| PREDICTED: Bos taurus similar to nexilin (LOC504819), mRNA
          Length = 2745

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 agatgtgaagagcaacgccg 120
           ||||||||||||||||||||
Sbjct: 439 agatgtgaagagcaacgccg 458
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>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0079L11, complete sequence
          Length = 124104

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    gagaaccagggagacattca 80
             ||||||||||||||||||||
Sbjct: 40202 gagaaccagggagacattca 40183
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 25       gagatccgcgccatcatggcgcagtacatgcc 56
                ||||| ||||| |||||||| |||||||||||
Sbjct: 12381114 gagattcgcgcgatcatggcccagtacatgcc 12381145
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>emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, NICN1 gene, DAG1 gene and BSN
            gene (partial)
          Length = 162073

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 276  agagatgtttgtgccaggacatag 299
            ||||||||||||||||| ||||||
Sbjct: 5528 agagatgtttgtgccagaacatag 5505
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>gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, complete sequence
          Length = 26013

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tattaatcacccaaaagtgc 239
             ||||||||||||||||||||
Sbjct: 21581 tattaatcacccaaaagtgc 21562
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 25    gagatccgcgccatcatggcgcagtacatgcc 56
             ||||| ||||| |||||||| |||||||||||
Sbjct: 40132 gagattcgcgcgatcatggcccagtacatgcc 40163
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>gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chromosome unknown, complete
              sequence
          Length = 221601

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    attattaatcacccaaaagt 237
              ||||||||||||||||||||
Sbjct: 202548 attattaatcacccaaaagt 202529
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      gagaaccagggagacattca 80
               ||||||||||||||||||||
Sbjct: 1378540 gagaaccagggagacattca 1378521
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 25       gagatccgcgccatcatggcgcagtacatgcc 56
                ||||| ||||| |||||||| |||||||||||
Sbjct: 12377877 gagattcgcgcgatcatggcccagtacatgcc 12377908
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>gb|AC133522.3| Homo sapiens BAC clone RP11-1277J4 from 2, complete sequence
          Length = 80803

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 332   acagtccaaagttcaaaatcatta 355
             |||||||||||| |||||||||||
Sbjct: 45321 acagtccaaagtccaaaatcatta 45298
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      tccgcgccatcatggcgcag 48
               ||||||||||||||||||||
Sbjct: 5191581 tccgcgccatcatggcgcag 5191600


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,902,427
Number of Sequences: 3902068
Number of extensions: 2902427
Number of successful extensions: 50763
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50584
Number of HSP's gapped (non-prelim): 167
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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