ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26o06 |
|---|---|
| Clone Library Name | barley_pub |
>YCF45_PORPU (P51281) Hypothetical 64.2 kDa protein ycf45 (ORF565)| Length = 565 Score = 257 bits (656), Expect = 2e-68 Identities = 129/198 (65%), Positives = 155/198 (78%) Frame = +1 Query: 28 VSKVGNFSEDNRSGINHSLHRISAIRNRKAHIIGLTCRVGRAISGSAEMIRDXXXXXXXX 207 V KVGNFS DNR+GI +LHRIS++RNR+ IIGLTCRVGRA+ G+ +IRD Sbjct: 67 VKKVGNFSGDNRAGIEKTLHRISSMRNREGSIIGLTCRVGRAVFGTISIIRDLLEQGDSI 126 Query: 208 XXXXXXXXXKTTLIREIARILADEGNKRVIIVDTSNEIGGDGDVPHSGIGRSRRMQVPKV 387 KTT +REIAR+L+DE KRV+I+DTSNEI GDGD+PH IGR+RRMQV + Sbjct: 127 LLLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAQP 186 Query: 388 TMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIDSIIKNPC 567 +QH VMIEAVENHMPEVI+IDEIGTELEA+AA TIA+RGVQLVGTAHG ++S+IKNP Sbjct: 187 DLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLESLIKNPT 246 Query: 568 LQMLVGGIESVTLGDEEA 621 L L+GGI+ VTLGD+EA Sbjct: 247 LADLIGGIQYVTLGDDEA 264
>YCF45_ODOSI (P49540) Hypothetical 51.9 kDa protein ycf45 (ORF455)| Length = 455 Score = 243 bits (619), Expect = 4e-64 Identities = 121/196 (61%), Positives = 148/196 (75%) Frame = +1 Query: 34 KVGNFSEDNRSGINHSLHRISAIRNRKAHIIGLTCRVGRAISGSAEMIRDXXXXXXXXXX 213 ++ FS DNR+GI +LHRIS IRNR+ I GLTCR+GRAI G+ +RD Sbjct: 69 RISKFSNDNRAGIERTLHRISCIRNRQFLINGLTCRIGRAIFGTISSVRDLLESQQSILL 128 Query: 214 XXXXXXXKTTLIREIARILADEGNKRVIIVDTSNEIGGDGDVPHSGIGRSRRMQVPKVTM 393 KTT+IREIAR+L+DE KRV+IVDTSNEI GD D+PHS IGR+RRMQV + Sbjct: 129 LGKPGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAIGRARRMQVATTDL 188 Query: 394 QHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIDSIIKNPCLQ 573 QH +MIEAVENHMP+VIVIDEIGTELEA+AA TIA++GVQLVGT HG ++++IKNP L Sbjct: 189 QHQIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIKNPPLS 248 Query: 574 MLVGGIESVTLGDEEA 621 L+GGI+SVTL D+EA Sbjct: 249 DLIGGIQSVTLSDDEA 264
>YCF45_CYACA (O19920) Hypothetical 37.9 kDa protein ycf45| Length = 335 Score = 207 bits (528), Expect = 2e-53 Identities = 104/198 (52%), Positives = 139/198 (70%) Frame = +1 Query: 28 VSKVGNFSEDNRSGINHSLHRISAIRNRKAHIIGLTCRVGRAISGSAEMIRDXXXXXXXX 207 + K+G F+EDNR+GI +LHRIS I+NR +I+GLT R+GR G +IRD Sbjct: 67 IKKIGIFNEDNRAGIYQTLHRISCIKNRYGNIVGLTYRIGREFIGIGPIIRDLIESNQST 126 Query: 208 XXXXXXXXXKTTLIREIARILADEGNKRVIIVDTSNEIGGDGDVPHSGIGRSRRMQVPKV 387 KT+ IREI+RIL++E KRVIIVD++NEI G+G PH G++RRM+V + Sbjct: 127 LLIGRPGIGKTSFIREISRILSNEIMKRVIIVDSANEISGEGCCPHISTGKARRMEVQSI 186 Query: 388 TMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIDSIIKNPC 567 QH VMIEA+ENH PE+I+IDEIGTE E+ AA +I+QRG++L+G+AH + ++ KNP Sbjct: 187 NSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLIGSAHSSDLFNLAKNPT 246 Query: 568 LQMLVGGIESVTLGDEEA 621 L LVGGIESVTL D +A Sbjct: 247 LCKLVGGIESVTLSDTQA 264
>SP3AA_BACSU (Q01367) Stage III sporulation protein AA| Length = 307 Score = 53.9 bits (128), Expect = 4e-07 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 6/121 (4%) Frame = +1 Query: 235 KTTLIREIARILADEGNKRVI-----IVDTSNEIGGD-GDVPHSGIGRSRRMQVPKVTMQ 396 KTTL+R++AR L+ G K ++ IVD +EI G +P G+ R+ V + Sbjct: 149 KTTLLRDLAR-LSSTGKKNMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RIDVLDACPK 205 Query: 397 HNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIDSIIKNPCLQM 576 ++ + + PEV+++DEIG + A GV ++ +AHG +I ++K P L+ Sbjct: 206 AEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDLMKRPSLKR 265 Query: 577 L 579 L Sbjct: 266 L 266
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%) Frame = -3 Query: 284 LPSSARILAISLIRVVFPT--PGGPITNMEPPP--TTRSRIISALPDIARPTRQ 135 LP+ A+ L L+ + PT P GP N+E PP RSR +LP + P Q Sbjct: 1250 LPTPAQKLQDPLVPIAAPTMPPSGPQPNLETPPQPPPRSRSSQSLPSDSSPQLQ 1303
>HOFB_HAEIN (P44622) Protein transport protein hofB homolog| Length = 464 Score = 31.6 bits (70), Expect = 2.0 Identities = 21/67 (31%), Positives = 33/67 (49%) Frame = +1 Query: 379 PKVTMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIDSIIK 558 P++ + N ++ P++I++ EI E AM A AQ G ++ T H T D+I Sbjct: 309 PQIGLDFNRLLRTFLRQDPDIIMLGEIRDEESAMIALRAAQTGHLVLSTLH--TNDAISA 366 Query: 559 NPCLQML 579 LQ L Sbjct: 367 ISRLQQL 373
>C27AA_BACUH (Q9S597) Pesticidal crystal protein cry27Aa (Insecticidal| delta-endotoxin CryXXVIIA(a)) (Crystaline entomocidal protoxin) (94 kDa crystal protein) Length = 826 Score = 30.8 bits (68), Expect = 3.4 Identities = 29/135 (21%), Positives = 52/135 (38%) Frame = -2 Query: 447 HNNFRHVIFNSLNHHVMLHRNFRNLHSPRAPNAGVRYIPITSYFIRCVHYDHTFVTLICQ 268 + N+ ++N N ++ H N + AP+ G+ Y T Y C+ + + Sbjct: 428 NENWLFSVYNQ-NGPIIKHSNIPGID---APSTGLNYSNYTHYLSNCIFQSN-------R 476 Query: 267 DSSYFPDQSGLPYSRGSNHQYGAASHHQITDHLRAARYSPSDTASEANYVSLAVPDGADP 88 + PD + Y G NH + + +TD + P E+ YV A Sbjct: 477 NGGSAPDYNTQSYVFGWNHYTIDPTGNYVTDAFEVNKNLP-----ESRYVPQISQVPAVK 531 Query: 87 VQRVVDPGSVVLGEI 43 + +PG VV ++ Sbjct: 532 ASDIFNPGRVVNAKV 546
>COMGA_BACHD (Q9K919) ComG operon protein 1 homolog| Length = 348 Score = 30.8 bits (68), Expect = 3.4 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = +1 Query: 382 KVTMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIDSIIKN 561 K + + V ++A H P+VI+I EI + A+ A A G ++ T H I Sbjct: 192 KAQLTYEVGLKAALRHDPDVIMIGEIRDQTTAVYAVRAALTGHLVLATIHSANARGTITR 251 Query: 562 PC 567 C Sbjct: 252 LC 253
>FTSK_LEPIN (Q8F1W7) DNA translocase ftsK| Length = 948 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = -3 Query: 329 SPPISLDVSTMITRLLPSSARILAISLIRVVFPTPGGPITNMEPPPTTRSRIISALPDIA 150 +PP+ + + IT L LA+ IR+V P PG +E P + R + L DI Sbjct: 544 TPPLGVKLGR-ITSLSDELRLYLAVKNIRIVAPIPGKSTIGIEVPNSIREDVF--LGDIL 600 Query: 149 RPTRQVRP 126 +RP Sbjct: 601 HQNLSLRP 608
>FTSK_LEPIC (Q72TG0) DNA translocase ftsK| Length = 948 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = -3 Query: 329 SPPISLDVSTMITRLLPSSARILAISLIRVVFPTPGGPITNMEPPPTTRSRIISALPDIA 150 +PP+ + + IT L LA+ IR+V P PG +E P + R + L DI Sbjct: 544 TPPLGVKLGR-ITSLSDELRLYLAVKNIRIVAPIPGKSTIGIEVPNSIREDVF--LGDIL 600 Query: 149 RPTRQVRP 126 +RP Sbjct: 601 HQNLSLRP 608
>NSMA2_HUMAN (Q9NY59) Sphingomyelin phosphodiesterase 3 (EC 3.1.4.12) (Neutral| sphingomyelinase 2) (Neutral sphingomyelinase II) (nSMase2) (nSMase-2) Length = 655 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = -2 Query: 153 SPSDTA-SEANYVSLAVPDGADPVQRVVDPGSVV-LGEIAHLGDGRR 19 SP++T+ S A++ SL P G D V R V PGS+ + + GDG R Sbjct: 173 SPTNTSISAASFSSLVSPQGGDGVARAV-PGSIKRTASVEYKGDGGR 218
>K1196_HUMAN (Q96KM6) Zinc finger protein KIAA1196| Length = 892 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = -3 Query: 371 ILLERPMPE*GTSP-SPPISLDVSTMITRLLPSSARILAISLIRVVFPTPGGPITNMEPP 195 + + RPMP P + PI++ S +T+ +P + I L+ V P P+T +P Sbjct: 240 VTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPV---PVT--KPV 294 Query: 194 PTTRSRIISALPDIARP 144 +R ++S ++RP Sbjct: 295 TVSRPIVVSKPVTVSRP 311
>VGLB_EHV1V (Q6S6T9) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 30.0 bits (66), Expect = 5.7 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 19/97 (19%) Frame = -3 Query: 422 STASIITLCCIVTLGTCILLERPMPE*GTSPSPPISLDVS-------TMITRLLPS---- 276 S I L C++ G+C++ P T+PSPP S S T+ LLP+ Sbjct: 65 SRVGTIVLACLLLFGSCVVRAVP-----TTPSPPTSTPTSMSTHSHGTVDPTLLPTETPD 119 Query: 275 -------SARILAISLIRVVFPTP-GGPITNMEPPPT 189 + ILA P P G + +EPP T Sbjct: 120 PLRLAVRESGILAEDGDFYTCPPPTGSTVVRIEPPRT 156
>VGLB_EHV1D (P25218) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 30.0 bits (66), Expect = 5.7 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 19/97 (19%) Frame = -3 Query: 422 STASIITLCCIVTLGTCILLERPMPE*GTSPSPPISLDVS-------TMITRLLPS---- 276 S I L C++ G+C++ P T+PSPP S S T+ LLP+ Sbjct: 65 SRVGTIVLACLLLFGSCVVRAVP-----TTPSPPTSTPTSMSTHSHGTVDPTLLPTETPD 119 Query: 275 -------SARILAISLIRVVFPTP-GGPITNMEPPPT 189 + ILA P P G + +EPP T Sbjct: 120 PLRLAVRESGILAEDGDFYTCPPPTGSTVVRIEPPRT 156
>VGLB_EHV1B (Q6DLH8) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 30.0 bits (66), Expect = 5.7 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 19/97 (19%) Frame = -3 Query: 422 STASIITLCCIVTLGTCILLERPMPE*GTSPSPPISLDVS-------TMITRLLPS---- 276 S I L C++ G+C++ P T+PSPP S S T+ LLP+ Sbjct: 65 SRVGTIVLACLLLFGSCVVRAVP-----TTPSPPTSTPTSMSTHSHGTVDPTLLPTETPD 119 Query: 275 -------SARILAISLIRVVFPTP-GGPITNMEPPPT 189 + ILA P P G + +EPP T Sbjct: 120 PLRLAVRESGILAEDGDFYTCPPPTGSTVVRIEPPRT 156
>VGLB_EHV1A (P18551) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 30.0 bits (66), Expect = 5.7 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 19/97 (19%) Frame = -3 Query: 422 STASIITLCCIVTLGTCILLERPMPE*GTSPSPPISLDVS-------TMITRLLPS---- 276 S I L C++ G+C++ P T+PSPP S S T+ LLP+ Sbjct: 65 SRVGTIVLACLLLFGSCVVRAVP-----TTPSPPTSTPTSMSTHSHGTVDPTLLPTETPD 119 Query: 275 -------SARILAISLIRVVFPTP-GGPITNMEPPPT 189 + ILA P P G + +EPP T Sbjct: 120 PLRLAVRESGILAEDGDFYTCPPPTGSTVVRIEPPRT 156
>VGLB_EHV1 (P18050) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 30.0 bits (66), Expect = 5.7 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 19/97 (19%) Frame = -3 Query: 422 STASIITLCCIVTLGTCILLERPMPE*GTSPSPPISLDVS-------TMITRLLPS---- 276 S I L C++ G+C++ P T+PSPP S S T+ LLP+ Sbjct: 65 SRVGTIVLACLLLFGSCVVRAVP-----TTPSPPTSTPTSMSTHSHGTVDPTLLPTETPD 119 Query: 275 -------SARILAISLIRVVFPTP-GGPITNMEPPPT 189 + ILA P P G + +EPP T Sbjct: 120 PLRLAVRESGILAEDGDFYTCPPPTGSTVVRIEPPRT 156
>RADA_HELPY (P56148) DNA repair protein radA homolog (DNA repair protein sms| homolog) Length = 448 Score = 30.0 bits (66), Expect = 5.7 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Frame = +1 Query: 370 MQVPKVTMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGV---- 537 ++ P Q +V I A+E+ EVI +EL+ + IA+ G+ LVG + GV Sbjct: 47 LKKPIPQAQKSVSIAAIEHE--EVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKST 104 Query: 538 ----TIDSIIKNPCLQMLVGGIESVT 603 + KN + V G ES++ Sbjct: 105 LLLKVASGLAKNQQKVLYVSGEESLS 130
>RUSC1_HUMAN (Q9BVN2) RUN and SH3 domain-containing protein 1 (New molecule| containing SH3 at the carboxy-terminus) (Nesca) Length = 902 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +2 Query: 20 RRPSPRWAISPRTTDPGSTTRCTGSAPSGTARLT*LAS 133 RR SP W++ + PGS+TR G+ S +RL L+S Sbjct: 555 RRSSP-WSVVEASVKPGSSTRSLGTLYSQVSRLAPLSS 591
>FTSK_TREPA (O83964) DNA translocase ftsK| Length = 799 Score = 29.6 bits (65), Expect = 7.5 Identities = 20/53 (37%), Positives = 26/53 (49%) Frame = -3 Query: 332 PSPPISLDVSTMITRLLPSSARILAISLIRVVFPTPGGPITNMEPPPTTRSRI 174 P P I L + IT L + A LA S +R+V P PG +E P RS + Sbjct: 393 PPPGIKL---SKITNLQDNVALKLAASSVRIVAPIPGKHAIGVEVPNKKRSLV 442
>ATOB_HAEIN (P44873) Acetyl-CoA acetyltransferase (EC 2.3.1.9) (Acetoacetyl-CoA| thiolase) Length = 393 Score = 29.6 bits (65), Expect = 7.5 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +1 Query: 22 PAVSKVGNFSEDNRSGINHSLHRISAIRNRKAHIIGL 132 PA K G + N SGIN + + KAH +GL Sbjct: 234 PAFKKEGTVTAGNASGINDGAAALILVSESKAHALGL 270
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.6 bits (65), Expect = 7.5 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Frame = -3 Query: 338 TSPSPPISLDVSTMITRLLPSSARILAISLIRVVFPT--PGGPITNMEPPPTTRS 180 T+PSPPI T T LP++ IS PT P P T PP TT S Sbjct: 1436 TTPSPPI-----TTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPS 1485
>CN103_HUMAN (Q96BY7) Protein C14orf103| Length = 909 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -2 Query: 273 CQDSSYFPDQSGLPYSRGSNHQYGAASHHQITD 175 C D FPD+SG S+ S Y + SHH I+D Sbjct: 279 CSDLFLFPDESG-NVSQESGPTYASFSHHFISD 310
>RADA_HELPJ (Q9ZMK9) DNA repair protein radA homolog (DNA repair protein sms| homolog) Length = 448 Score = 29.3 bits (64), Expect = 9.8 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Frame = +1 Query: 370 MQVPKVTMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGV---- 537 ++ P +Q +V I +E+ EVI +EL+ + IA+ G+ LVG + GV Sbjct: 47 LKKPLPQVQKSVSIAEIEHE--EVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKST 104 Query: 538 ----TIDSIIKNPCLQMLVGGIESVT 603 + KN + V G ES++ Sbjct: 105 LLLKVASGLAKNQQKVLYVSGEESLS 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,170,174 Number of Sequences: 219361 Number of extensions: 1865650 Number of successful extensions: 6749 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6733 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
