ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26n07 |
|---|---|
| Clone Library Name | barley_pub |
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 82.8 bits (203), Expect = 2e-16 Identities = 38/51 (74%), Positives = 44/51 (86%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDRDSGRSRGFGFVTY SA EVN+AI +L+G+DLDGR IRV+ AE +PR Q Sbjct: 241 YDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQ 291 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YD+ SGRSRGFGFVT + +EV A +G ++DGR IRV + + + Sbjct: 121 YDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 171
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 82.0 bits (201), Expect = 3e-16 Identities = 38/51 (74%), Positives = 44/51 (86%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDRDSGRSRGFGFVTY S+ EVN+AI +L+GVDLDGR IRV+ AE +PR Q Sbjct: 240 YDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQ 290 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YD+ +GRSRGFGFVT + +EV A +G ++DGR IRV + + + Sbjct: 120 YDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRE 170
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/48 (79%), Positives = 44/48 (91%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 YDRDSGRSRGFGFVTY SA+EVNNAI +LDGVDL+GR IRV+ AE++P Sbjct: 221 YDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 268 Score = 50.8 bits (120), Expect = 8e-07 Identities = 26/52 (50%), Positives = 33/52 (63%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 YD+ +GRSRGFGFVT S +EV A +G +LDGR +RV P E+R Sbjct: 120 YDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKR 169
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 81.6 bits (200), Expect = 4e-16 Identities = 38/48 (79%), Positives = 44/48 (91%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 YDRDSGRSRGFGFVTY SA+EVNNAI +LDGVDL+GR IRV+ AE++P Sbjct: 227 YDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 274 Score = 50.8 bits (120), Expect = 8e-07 Identities = 26/52 (50%), Positives = 33/52 (63%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 YD+ +GRSRGFGFVT S +EV A +G +LDGR +RV P E+R Sbjct: 120 YDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN--SGPPPEKR 169
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 78.6 bits (192), Expect = 3e-15 Identities = 36/48 (75%), Positives = 42/48 (87%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 YDRDSGRS+GFGFVTY S+ EV NAI +LDG DLDGRQIRV+ AE++P Sbjct: 237 YDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284 Score = 53.9 bits (128), Expect = 9e-08 Identities = 25/54 (46%), Positives = 32/54 (59%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 YD+ +GRSRGFGFVT S EV A +G +LDGR +RV P+ + F Sbjct: 124 YDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 177
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 72.0 bits (175), Expect = 3e-13 Identities = 33/48 (68%), Positives = 41/48 (85%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 YDRDSGRS+GFGFVT S+ EV AI++L+G DLDGRQIRV+ AE++P Sbjct: 290 YDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337 Score = 51.6 bits (122), Expect = 5e-07 Identities = 23/54 (42%), Positives = 32/54 (59%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 YD+ +GRSRGFGFVT +A EV A +G + +GR +RV P+ + F Sbjct: 132 YDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESF 185
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 68.9 bits (167), Expect = 3e-12 Identities = 32/48 (66%), Positives = 38/48 (79%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 YDR++GRSRGFGFVT DE+N AIS LDG +L+GR IRV VAE +P Sbjct: 277 YDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERP 324 Score = 46.6 bits (109), Expect = 1e-05 Identities = 23/52 (44%), Positives = 33/52 (63%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 Y+R++ +SRGFGFVT S DE A+ + DL+GR + TV ++ PR R Sbjct: 183 YNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLL--TVNKAAPRGSR 232
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 67.8 bits (164), Expect = 6e-12 Identities = 32/49 (65%), Positives = 38/49 (77%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 +DR+SGRSRGFGFVT S E++ AI+NLDG LDGR IRV AE +PR Sbjct: 224 FDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPR 272 Score = 43.9 bits (102), Expect = 9e-05 Identities = 22/52 (42%), Positives = 33/52 (63%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 Y+R++ RSRGFGFVT + +E + A+ DL+GR + TV ++ PR R Sbjct: 130 YNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL--TVNKAAPRGSR 179
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 67.8 bits (164), Expect = 6e-12 Identities = 32/48 (66%), Positives = 38/48 (79%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 DR++GRSRGFGFVT S EVN+AI+ LDG LDGR +RV VAE +PR Sbjct: 183 DRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPR 230 Score = 52.0 bits (123), Expect = 3e-07 Identities = 23/52 (44%), Positives = 34/52 (65%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 Y+R++ RSRGFGFVT + +E A+ L+G D+DGRQ+ V A + +R Sbjct: 88 YNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 67.4 bits (163), Expect = 8e-12 Identities = 32/49 (65%), Positives = 39/49 (79%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 YDR++GRSRGFGFVT S E+++AI+NLDG LDGR IRV VAE + R Sbjct: 263 YDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSR 311 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 Y+RD+ +SRGFGFVT + +E A+ + D++GR + V A + R Sbjct: 169 YNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPER 221
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 59.3 bits (142), Expect = 2e-09 Identities = 25/47 (53%), Positives = 37/47 (78%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 YDR SGRSRGFGF+T+ SA+ +N+A+ ++ V+L+GR +R+ VA K Sbjct: 250 YDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 YDR + RSRGF FVT GS +E AI DG + GR ++V E Sbjct: 147 YDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPE 191
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 56.2 bits (134), Expect = 2e-08 Identities = 25/46 (54%), Positives = 36/46 (78%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++GRSRGFGFVT+ S + + +AI N++G +LDGR I V A+S+ Sbjct: 42 DRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 55.8 bits (133), Expect = 2e-08 Identities = 25/46 (54%), Positives = 35/46 (76%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++GRSRGFGFVT+ S + +AI N++G +LDGR I V A+S+ Sbjct: 42 DRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 54.7 bits (130), Expect = 5e-08 Identities = 25/53 (47%), Positives = 33/53 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 DR++GRSRGFGFV + AIS +DG +L+GR IRV A +P R + Sbjct: 69 DRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPRAY 121
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++GRSRGFGFVT+ + +AI ++G DLDGR I V A+S+ Sbjct: 42 DRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++GRSRGFGFVT+ + +AI ++G DLDGR I V A+S+ Sbjct: 42 DRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 53.1 bits (126), Expect = 2e-07 Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++GRSRGFGFVT+ + +AI ++G DLDGR I V A+S+ Sbjct: 42 DRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 52.0 bits (123), Expect = 3e-07 Identities = 24/46 (52%), Positives = 33/46 (71%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR+SGRSRGFGFVT+ + +AI ++G +LDGR I V A+S+ Sbjct: 40 DRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 52.0 bits (123), Expect = 3e-07 Identities = 23/46 (50%), Positives = 33/46 (71%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++GRSRGFGFVT+ + +AI ++G +LDGR I V A+S+ Sbjct: 40 DRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/51 (47%), Positives = 35/51 (68%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 DR++ RSRGFGFVT+ + D+ +A+ ++G +DGRQIRV A E+R Sbjct: 39 DRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKSSGERR 89
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 51.6 bits (122), Expect = 5e-07 Identities = 23/46 (50%), Positives = 33/46 (71%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++GRSRGFGFVT+ + +AI ++G +LDGR I V A+S+ Sbjct: 40 DRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/48 (47%), Positives = 33/48 (68%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 DSGRSRGFGFV YG+ +E A+S ++G +++GR I V A+ + Q Sbjct: 226 DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273 Score = 35.8 bits (81), Expect = 0.026 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 + G S+GFGFV + S +E A++ ++G + + + V +A+ K E+R+ Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK--EERK 375 Score = 32.7 bits (73), Expect = 0.22 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D SRG+GFV + + + N AI ++G+ L+ R +V V K R +R Sbjct: 133 DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR--KVFVGHFKSRRER 179
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 50.8 bits (120), Expect = 8e-07 Identities = 22/46 (47%), Positives = 34/46 (73%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 DR++ RSRGFGFVT+ + + + +AI ++G +LDGR I V A+S+ Sbjct: 21 DRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 50.1 bits (118), Expect = 1e-06 Identities = 22/48 (45%), Positives = 33/48 (68%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 D+GRSRGFGFV YG+ +E A+S ++G +++GR I V A+ + Q Sbjct: 226 DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQ 273 Score = 35.8 bits (81), Expect = 0.026 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 + G S+GFGFV + S +E A++ ++G + + + V +A+ K E+R+ Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK--EERK 375 Score = 33.1 bits (74), Expect = 0.17 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D SRG+GFV + + + N AI ++G+ L+ R +V V K R +R Sbjct: 133 DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKSRRER 179
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 49.3 bits (116), Expect = 2e-06 Identities = 23/51 (45%), Positives = 34/51 (66%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 DR++ RSRGFGF+T+ + + ++A+ ++G LDGRQIRV A R R Sbjct: 40 DRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSR 90
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/43 (51%), Positives = 32/43 (74%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR++ RSRGFGFVT+ + D+ +A+ ++G +DGRQIRV A Sbjct: 40 DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/43 (51%), Positives = 32/43 (74%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR++ RSRGFGFVT+ + D+ +A+ ++G +DGRQIRV A Sbjct: 40 DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/43 (51%), Positives = 32/43 (74%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR++ RSRGFGFVT+ + D+ +A+ ++G +DGRQIRV A Sbjct: 40 DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/43 (51%), Positives = 32/43 (74%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR++ RSRGFGFVT+ + D+ +A+ ++G +DGRQIRV A Sbjct: 40 DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/43 (51%), Positives = 32/43 (74%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR++ RSRGFGFVT+ + D+ +A+ ++G +DGRQIRV A Sbjct: 40 DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 47.8 bits (112), Expect = 7e-06 Identities = 20/48 (41%), Positives = 33/48 (68%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 +SGRSRGFGFV YG+ +E A++ ++G +++GR + V A+ + Q Sbjct: 226 NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQ 273 Score = 35.8 bits (81), Expect = 0.026 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 + G S+GFGFV + S +E A++ ++G + + + V +A+ K E+R+ Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRK--EERK 375 Score = 32.7 bits (73), Expect = 0.22 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D SRG+GFV + + + N AI ++G+ L+ R +V V K R +R Sbjct: 133 DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKSRRER 179
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 47.4 bits (111), Expect = 9e-06 Identities = 23/50 (46%), Positives = 33/50 (66%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPRE 183 YD+ SGRSR FGFVT + ++ N I L+ ++ GR+I+V + E KP E Sbjct: 117 YDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITE-KPLE 165 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 + +S GFGFV++ S +EV AI L+ L+G++IRV A Sbjct: 221 TSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 47.4 bits (111), Expect = 9e-06 Identities = 19/47 (40%), Positives = 32/47 (68%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +D +G SRG+GFV++ S D+ NA+ ++ G DL+GR +R+ A + Sbjct: 194 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 240
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 47.4 bits (111), Expect = 9e-06 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 DR++ RSRGFGF+T+ + + + A+ ++G LDGRQIRV A R R Sbjct: 40 DRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSARGTR 90
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 46.6 bits (109), Expect = 1e-05 Identities = 23/51 (45%), Positives = 33/51 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D+D+G+SRGFGFVTY SAD V+ N +D R+I + AE + +Q+ Sbjct: 277 DKDTGQSRGFGFVTYDSADAVDRVCQN-KFIDFKDRKIEIKRAEPRHMQQK 326 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = +1 Query: 37 DRDSGRSRGFGFVTY---GSADEVNNAISNLDGVDLDGRQ 147 D +GRSRGFGF+++ S DEV LDG +D ++ Sbjct: 193 DPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKR 232
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 46.6 bits (109), Expect = 1e-05 Identities = 21/47 (44%), Positives = 32/47 (68%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 YD+ +GRSRGF FV + D+ A+ +G++LDGR+IRV + +K Sbjct: 150 YDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK 196
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 46.6 bits (109), Expect = 1e-05 Identities = 21/47 (44%), Positives = 32/47 (68%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 YD+ +GRSRGF FV + D+ A+ +G++LDGR+IRV + +K Sbjct: 152 YDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITK 198
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/44 (50%), Positives = 31/44 (70%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 +GRSRG+GFV + S D N+AIS ++G +L+G I V VA+ P Sbjct: 68 TGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 YD+ S RSRGF FV + + D+ A +G++LDGR+IRV + +K Sbjct: 151 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 YD+ S RSRGF FV + + D+ A +G++LDGR+IRV + +K Sbjct: 151 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 45.8 bits (107), Expect = 2e-05 Identities = 21/47 (44%), Positives = 31/47 (65%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 YD+ S RSRGF FV + + D+ A +G++LDGR+IRV + +K Sbjct: 151 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 197
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 45.1 bits (105), Expect = 4e-05 Identities = 24/51 (47%), Positives = 32/51 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 DR++GR RGFGFV + E AI LDG + GR ++V ++KPRE R Sbjct: 35 DRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVN--KAKPRENR 83
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 43.5 bits (101), Expect = 1e-04 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 3/49 (6%) Frame = +1 Query: 52 RSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE---SKPREQR 189 RSRGFG+V + +AD ++ A++ L G DL GR +R+TVAE S RE+R Sbjct: 131 RSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAEPRRSFAREER 178
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 Y+R + RSRG+G+V + + AI + G ++DGR I ++ SKP Sbjct: 201 YERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248 Score = 32.0 bits (71), Expect = 0.37 Identities = 11/45 (24%), Positives = 26/45 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 ++ + +GFG+V + + ++ A+ L G +D R +R+ + +P Sbjct: 303 ETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 347
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 +SG+S+GFGFV++ ++ A+ ++G +L+G+QI V A+ K Q Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K Q Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 Score = 33.9 bits (76), Expect = 0.098 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D S+G+GFV + + + AI ++G+ L+GR +V V + K R++R Sbjct: 133 DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--KVFVGQFKSRKER 179
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 43.1 bits (100), Expect = 2e-04 Identities = 17/40 (42%), Positives = 28/40 (70%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D D+GRS+G+GF+T+ ++ A+ L+G +L GR +RV Sbjct: 297 DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/48 (39%), Positives = 31/48 (64%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 D G+SRGFGFV++ ++ A+ +++G DL+G+ I V A+ K Q Sbjct: 226 DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K Q Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D S+G+GFV + + + AI ++G+ L+ R +V V K R++R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR--KVFVGRFKSRKER 179
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 +SG+S+GFGFV++ ++ A+ ++G +L+G+QI V A+ K Q Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K Q Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D S+G+GFV + + + AI ++G+ L+ R +V V K R++R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKSRKER 179
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 +SG+S+GFGFV++ ++ A+ ++G +L+G+QI V A+ K Q Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K Q Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D S+G+GFV + + + AI ++G+ L+ R +V V K +++R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKSQKER 179
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 +SG+S+GFGFV++ ++ A+ ++G +L+G+QI V A+ K Q Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K Q Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D S+G+GFV + + + AI ++G+ L+ R +V V K R++R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKSRKER 179
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 2e-04 Identities = 18/48 (37%), Positives = 32/48 (66%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 +SG+S+GFGFV++ ++ A+ ++G +L+G+QI V A+ K Q Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K Q Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D S+G+GFV + + + AI ++G+ L+ R +V V K R++R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKSRKER 179
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDR++G+ +G+GF Y + +A+ NL+G + GR +RV A S+ ++ Sbjct: 49 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDR++G+ +G+GF Y + +A+ NL+G + GR +RV A S+ ++ Sbjct: 49 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDR++G+ +G+GF Y + +A+ NL+G + GR +RV A S+ ++ Sbjct: 49 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 42.7 bits (99), Expect = 2e-04 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE-SKPREQR 189 D+ S +S+GFGFV + + +A+ DG +DGR++RVT+A+ +P ++R Sbjct: 53 DKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDER 104
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDR++G+ +G+GF Y + +A+ NL+G + GR +RV A S+ ++ Sbjct: 49 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDR++G+ +G+GF Y + +A+ NL+G + GR +RV A S+ ++ Sbjct: 49 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 YDR++G+ +G+GF Y + +A+ NL+G + GR +RV A S+ ++ Sbjct: 49 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 DRD+G S+GFGFV + +A++ A ++ ++DG ++ + A+ K QR Sbjct: 533 DRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQR 583 Score = 37.7 bits (86), Expect = 0.007 Identities = 12/43 (27%), Positives = 30/43 (69%) Frame = +1 Query: 40 RDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 ++ GR++GF F+ + SA++ +A+ + + +++GR IR+ ++ Sbjct: 444 QNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 486
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/52 (38%), Positives = 31/52 (59%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 DR++ +SRGF FVT+ S + +A +++G LDG+ I+V A E R Sbjct: 42 DRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGR 93
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 41.6 bits (96), Expect = 5e-04 Identities = 20/47 (42%), Positives = 29/47 (61%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 D +G+S+G+GFV++ + + NAI + G L GRQIR A KP Sbjct: 140 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 41.6 bits (96), Expect = 5e-04 Identities = 20/47 (42%), Positives = 29/47 (61%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 D +G+S+G+GFV++ + + NAI + G L GRQIR A KP Sbjct: 140 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 41.6 bits (96), Expect = 5e-04 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D RS+GFG++ Y + NA+ ++G DL GR +RV + K Sbjct: 375 DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 D+ SGRS+G +V + D V AI+ L G L G + V + E++ + R Sbjct: 274 DKISGRSKGVAYVEFCHEDSVQAAIA-LSGKRLLGLPVIVQLTEAEKNRKAR 324
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 D +G+S+G+GFV++ + + NAI ++ G L GRQIR A KP Sbjct: 148 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 194
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/41 (43%), Positives = 30/41 (73%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 +D+ +G S+G+GFV + ++DE A+S + GV L+GR I+V Sbjct: 197 HDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV 237
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 41.2 bits (95), Expect = 6e-04 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 D +G+S+G+GFV++ + + NAI ++ G L GRQIR A KP Sbjct: 131 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKP 177
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 DRD+G S+GFGFV + S ++ A ++ ++DG ++ + A+ K QR Sbjct: 584 DRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQR 634 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/46 (21%), Positives = 23/46 (50%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 G S+G ++ + + E A+ G ++DGR + + K +++ Sbjct: 405 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQE 450
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 40.8 bits (94), Expect = 8e-04 Identities = 16/48 (33%), Positives = 31/48 (64%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 D+G+S+GFGFV++ ++ A+ ++G D++G+ + V A+ K Q Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K Q Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D S+G+GFV + + + AI ++G+ L+ R +V V K R++R Sbjct: 133 DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR--KVFVGRFKSRKER 179
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 40.8 bits (94), Expect = 8e-04 Identities = 17/47 (36%), Positives = 30/47 (63%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 +G+S+GFGFV+Y ++ N A+ ++G ++ G+ I V A+ K Q Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQ 273 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/50 (34%), Positives = 32/50 (64%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 + GRS+GFGFV + S +E A++ ++G + + + V +A+ K E+R+ Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRK--EERK 375
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 40.4 bits (93), Expect = 0.001 Identities = 15/40 (37%), Positives = 28/40 (70%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D ++GRS+G+GF+T+ ++ A+ L+G +L GR ++V Sbjct: 284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 40.4 bits (93), Expect = 0.001 Identities = 15/40 (37%), Positives = 28/40 (70%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D ++GRS+G+GF+T+ ++ A+ L+G +L GR ++V Sbjct: 284 DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 DR++ +SRGF FVT+ S + + +++G LDG+ I+V A E R Sbjct: 42 DRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPSFESGR 93
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 40.0 bits (92), Expect = 0.001 Identities = 20/47 (42%), Positives = 31/47 (65%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 DR++ +SRGF FVT S + +A +++G LDG+ I+V A +KP Sbjct: 42 DRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA-TKP 87
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/45 (40%), Positives = 29/45 (64%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 +R +GFVT ++DE IS+L +L GR I V A+++P E++ Sbjct: 491 ARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPSEKK 535
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR + SRGF FV + + +A+ +DG LDGR++RV +A Sbjct: 48 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR + SRGF FV + + +A+ +DG LDGR++RV +A Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR + SRGF FV + + +A+ +DG LDGR++RV +A Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR + SRGF FV + + +A+ +DG LDGR++RV +A Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 DR + SRGF FV + + +A+ +DG LDGR++RV +A Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 28/43 (65%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 D+ +G S G+GFV Y +A + AIS L+G+ L + I+V+ A Sbjct: 54 DKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA 96 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + +E AI++L+G L + ++V+ +K Sbjct: 278 DFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVSFKTNK 323
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/44 (40%), Positives = 28/44 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 D +S R RGF F+ Y +++ AI N++ +L GR IRV +A+ Sbjct: 40 DYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAK 83
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/44 (38%), Positives = 27/44 (61%) Frame = +1 Query: 61 GFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 GF FV + D+ A L+G +L G Q+RV +++ +PR+ RR Sbjct: 44 GFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISKGRPRQGRR 87
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 38.5 bits (88), Expect = 0.004 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 Y++ SG+ RG+ F+ Y ++++A + DG +DGR++ V V + Sbjct: 136 YNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/44 (36%), Positives = 29/44 (65%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 + G+S+GFGFV Y + +E N A++ ++ L G+ + V +A+ K Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK 442 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +1 Query: 52 RSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 + RGFGFV Y + + A+ L+ + G+++ V A+ K Sbjct: 299 KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKK 339
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 Y + SG+ RG+ F+ Y ++++A + DG +DGR++ V V + Sbjct: 136 YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 29/43 (67%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 D +G S G+GFV +GS + AI+NL+G+ + ++I+V+ A Sbjct: 112 DYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFA 154
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 38.1 bits (87), Expect = 0.005 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D ++ RSRGFGFVTY + +EV+ A+ N +DGR + A S+ QR Sbjct: 47 DPNTKRSRGFGFVTYATVEEVDAAM-NARPHKVDGRVVEPKRAVSREDSQR 96 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 138 DRGSGKKRGFAFVTFDDHDSVDKIV 162
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/47 (31%), Positives = 28/47 (59%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 Y + SG+ RG+ F+ Y ++++A + DG +DGR++ V V + Sbjct: 136 YSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SG+S+GFGFV Y + + A+ +L G +DG+ + V A+ K Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 31.2 bits (69), Expect = 0.63 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D S+G+ +V + S N AI +++GV L+ RQ+ V Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SG+S+GFGFV Y + + A+ +L G +DG+ + V A+ K Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 31.2 bits (69), Expect = 0.63 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D S+G+ +V + S N AI +++GV L+ RQ+ V Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SG+S+GFGFV Y + + A+ +L G +DG+ + V A+ K Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 31.2 bits (69), Expect = 0.63 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D S+G+ +V + S N AI +++GV L+ RQ+ V Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SG+S+GFGFV Y + + A+ +L G +DG+ + V A+ K Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 31.2 bits (69), Expect = 0.63 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D S+G+ +V + S N AI +++GV L+ RQ+ V Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SG+S+GFGFV Y + + A+ +L G +DG+ + V A+ K Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 31.2 bits (69), Expect = 0.63 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D S+G+ +V + S N AI +++GV L+ RQ+ V Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/43 (39%), Positives = 27/43 (62%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SG+S+GFGFV Y + + A+ +L G +DG+ + V A+ K Sbjct: 235 SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277 Score = 31.2 bits (69), Expect = 0.63 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D S+G+ +V + S N AI +++GV L+ RQ+ V Sbjct: 140 DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 38.1 bits (87), Expect = 0.005 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D ++ RSRGFGFVTY + +EV+ A+ N +DGR + A S+ QR Sbjct: 47 DPNTKRSRGFGFVTYATVEEVDAAM-NARPHKVDGRVVEPKRAVSREDSQR 96 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 138 DRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 38.1 bits (87), Expect = 0.005 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D ++ RSRGFGFVTY + +EV+ A+ N +DGR + A S+ QR Sbjct: 47 DPNTKRSRGFGFVTYATVEEVDAAM-NARPHKVDGRVVEPKRAVSREDSQR 96 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 138 DRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 38.1 bits (87), Expect = 0.005 Identities = 22/51 (43%), Positives = 31/51 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D ++ RSRGFGFVTY + +EV+ A+ N +DGR + A S+ QR Sbjct: 47 DPNTKRSRGFGFVTYATVEEVDAAM-NARPHKVDGRVVEPKRAVSREDSQR 96 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 138 DRGSGKKRGFAFVTFDDHDSVDKIV 162
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/50 (36%), Positives = 32/50 (64%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 + GRS+GFGFV + +A E A++ L+G + + + V +A+ K E+R+ Sbjct: 322 EEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRK--EERK 369 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +1 Query: 40 RDSGRSRGFGFVTYGSADEVNNAISNLDGVDL-DGRQIRVTVAESKPREQR 189 ++ G+S+GFGFV + + + A+ L+G D+ +G+ + V A+ K Q+ Sbjct: 217 KEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQ 267 Score = 35.0 bits (79), Expect = 0.044 Identities = 16/49 (32%), Positives = 32/49 (65%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 + G S+G+GFV + + + N +I ++G+ L+G+ +V V + PR++R Sbjct: 125 EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGK--KVYVGKFIPRKER 171
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 DR++G S+GFGFV + S ++ A ++ ++DG +VT+ +KP+ + F Sbjct: 605 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDWAKPKGEGGF 655 Score = 32.7 bits (73), Expect = 0.22 Identities = 10/36 (27%), Positives = 26/36 (72%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 G+S+G+ F+ + S ++ A+++ + ++++GR IR+ Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 557 Score = 31.2 bits (69), Expect = 0.63 Identities = 12/48 (25%), Positives = 23/48 (47%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 GRS+G ++ + S + + G ++DGR + + K + Q R Sbjct: 429 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 476
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 DR++G S+GFGFV + S ++ A ++ ++DG +VT+ +KP+ + F Sbjct: 604 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDWAKPKGEGGF 654 Score = 31.6 bits (70), Expect = 0.48 Identities = 10/37 (27%), Positives = 26/37 (70%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 +G+S+G+ F+ + S ++ A+++ + +++GR IR+ Sbjct: 520 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 556 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/46 (21%), Positives = 21/46 (45%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 G+S+G ++ + + + G ++DGR I + K + Q Sbjct: 427 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQ 472
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 DR++G S+GFGFV + S ++ A ++ ++DG +VT+ +KP+ + F Sbjct: 602 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDWAKPKGEGGF 652 Score = 32.7 bits (73), Expect = 0.22 Identities = 10/36 (27%), Positives = 26/36 (72%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 G+S+G+ F+ + S ++ A+++ + ++++GR IR+ Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL 554 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/48 (22%), Positives = 23/48 (47%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 G+S+G ++ + S + + G ++DGR + + K + Q R Sbjct: 426 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 473
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 DR++G S+GFGFV + S ++ A ++ ++DG +VT+ +KP+ + F Sbjct: 603 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDWAKPKGEGGF 653 Score = 31.6 bits (70), Expect = 0.48 Identities = 10/37 (27%), Positives = 26/37 (70%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 +G+S+G+ F+ + S ++ A+++ + +++GR IR+ Sbjct: 519 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 555 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/46 (21%), Positives = 21/46 (45%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 G+S+G ++ + + + G ++DGR I + K + Q Sbjct: 426 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQ 471
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 DR++G S+GFGFV + S ++ A ++ ++DG +VT+ +KP+ + F Sbjct: 599 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDWAKPKGEGGF 649 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/48 (22%), Positives = 23/48 (47%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 G+S+G ++ + S + + G ++DGR + + K + Q R Sbjct: 427 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQER 474
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/53 (33%), Positives = 33/53 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 DR++G S+GFGFV + S ++ A ++ ++DG +VT+ +KP+ + F Sbjct: 602 DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDWAKPKGEGGF 652 Score = 31.6 bits (70), Expect = 0.48 Identities = 10/37 (27%), Positives = 26/37 (70%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 +G+S+G+ F+ + S ++ A+++ + +++GR IR+ Sbjct: 518 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 554 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/46 (21%), Positives = 21/46 (45%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 G+S+G ++ + + + G ++DGR I + K + Q Sbjct: 425 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQ 470
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 2/47 (4%) Frame = +1 Query: 40 RDSGR--SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 ++SG+ S GFGFV + + ++ N AIS LDG LDG ++++ ++ + Sbjct: 655 KNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQ 701 Score = 35.4 bits (80), Expect = 0.034 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 +RGF FV + E A+S L+GV L GR++ + AE P Sbjct: 756 ARGFAFVEFNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDP 796 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D +G+S+GF +V + ++ A +LD GR + + A+ K Sbjct: 344 DTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKK 389 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAES 171 +G SR F F+ Y SAD A+ + +D +I V A++ Sbjct: 38 NGESRKFAFIGYKSADAAERAVKYFNKSFIDTARIEVEFAKT 79
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF*DILTLVR 219 G SRGFGFV Y + +E A+ ++G + + + V +A+ K Q + T +R Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIR 421 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 GRS+G+GFV + + AI L+G+ L+ +Q+ V Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISN----LDGVDLD 138 + +SGRSRGFGFVT+ VN+ + N LDG +D Sbjct: 41 NNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTID 78 Score = 35.8 bits (81), Expect = 0.026 Identities = 15/47 (31%), Positives = 31/47 (65%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 YD++ +SRGFGF+++ V + ++N ++L+G+Q+ + AE + Sbjct: 129 YDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQVEIKKAEPR 174
>YBF1_YEAST (P34217) Hypothetical 73.8 kDa protein in SAS3-SEC17 intergenic| region Length = 668 Score = 37.0 bits (84), Expect = 0.012 Identities = 15/52 (28%), Positives = 30/52 (57%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 Y D+G RG F + + +E I++L+G ++ GR+++V + P+ +R Sbjct: 118 YHFDNGIFRGLAFANFTTPEETTQVITSLNGKEISGRKLKVEYKKMLPQAER 169
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 37.0 bits (84), Expect = 0.012 Identities = 23/51 (45%), Positives = 30/51 (58%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D +S RSRGFGFVTY S DEV+ A++ +DGR + A S+ R Sbjct: 48 DPNSKRSRGFGFVTYLSTDEVDAAMTARPH-KVDGRVVEPKRAVSREDSSR 97 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNN-AISNLDGVDLDGRQIRVTVAESK 174 DR SG+ RGF FVT+ D V+ I V+ Q+R +++ + Sbjct: 139 DRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKALSKQE 185
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 G+S+GFGFV + +AD+ A+ +L+G D ++ V A+ K + Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERE 297 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 SG+S+G+GFV Y + + AI L+G+ L+ +Q+ V Sbjct: 160 SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196 Score = 35.4 bits (80), Expect = 0.034 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 +G S+G GFV + + +E A+S L G ++ + + V +A+ K E RR Sbjct: 354 NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRK--EDRR 400 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 52 RSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 RS G+G+V + + + AI L+ + L G+ IRV + P +R Sbjct: 75 RSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 36.6 bits (83), Expect = 0.015 Identities = 21/51 (41%), Positives = 31/51 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D ++ RSRGFGFVTY + ++V+ A+ N +DGR + A S+ QR Sbjct: 47 DPNTKRSRGFGFVTYATVEKVDAAM-NARPHKVDGRVVEPKRAVSREDSQR 96 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ + V+ + Sbjct: 138 DRGSGKKRGFAFVTFDDHNSVDKIV 162
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 36.6 bits (83), Expect = 0.015 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 YD + R RGFGF+T+ V+ A+ N+ D+ G+++ V AE PR+ + Sbjct: 147 YDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAE--PRDSK 195 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISN----LDGVDLDGRQIR---VTVAESKPRE 183 D+ + +SRGFGFV + + V +++ LDG ++D + + S+PRE Sbjct: 44 DKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPRE 99
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 36.6 bits (83), Expect = 0.015 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 +R +GFVT ++DE IS+L +L GR I V A+++P Sbjct: 447 ARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEP 487
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 36.6 bits (83), Expect = 0.015 Identities = 18/48 (37%), Positives = 29/48 (60%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 G SRGFGFV Y + +E A+S ++G + + + + +A+ K E RR Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRK--EDRR 414 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 +GRS+G+GFV + + AI L+G+ ++ +Q+ V Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 36.6 bits (83), Expect = 0.015 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 YD + R RGFGF+T+ V+ A+ N+ D+ G+++ V AE PR+ + Sbjct: 146 YDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAE--PRDSK 194
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 36.6 bits (83), Expect = 0.015 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 YD + R RGFGF+T+ V+ A+ N+ D+ G+++ V AE PR+ + Sbjct: 146 YDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAE--PRDSK 194
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 36.2 bits (82), Expect = 0.020 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 +G SRGFG V Y + DE+ AI +G++++GR + V Sbjct: 255 NGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/49 (30%), Positives = 21/49 (42%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 G RG G V + + V +AIS DG R++ V P + F Sbjct: 158 GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEF 206
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 36.2 bits (82), Expect = 0.020 Identities = 15/46 (32%), Positives = 27/46 (58%) Frame = +1 Query: 52 RSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 RSRGFGFV++ D+ A++ +G +RV +A+ + R ++ Sbjct: 64 RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKK 109 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 G+ GF FVT A+ N + +DGR++ V A K R Sbjct: 185 GKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQKNR 228
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 36.2 bits (82), Expect = 0.020 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 + G+S+GFGFV + + +E +A+ G G+ + V +A+ K Sbjct: 339 EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKK 382 Score = 30.8 bits (68), Expect = 0.83 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D SGRS +G+ + S + N AI + L+G+ IRV + P +R Sbjct: 58 DASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARR 108 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 + G+SRG+GFV + D + AI L+ + ++I V Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 36.2 bits (82), Expect = 0.020 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 +R +GFVT +A+E I++L +L G+ I V A+S+P +R Sbjct: 468 ARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEPAGKR 512
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 35.8 bits (81), Expect = 0.026 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE-SKP 177 SRGFGF+++ + +E +AI NL+ + GR + V A+ S+P Sbjct: 141 SRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRP 182
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 35.4 bits (80), Expect = 0.034 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 D ++ + RGF FV + A++ AI N++ +L GR IRV +A+ Sbjct: 40 DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 35.4 bits (80), Expect = 0.034 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 D ++ + RGF FV + A++ AI N++ +L GR IRV +A+ Sbjct: 40 DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 83
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 35.4 bits (80), Expect = 0.034 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SG+ RG+ F+ Y ++++A + DG +DGR++ V V + Sbjct: 143 SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 185
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 35.4 bits (80), Expect = 0.034 Identities = 20/50 (40%), Positives = 31/50 (62%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 DR S +SRGF F+T+ + + NA +++G L G+ I+V A+ KP Q Sbjct: 42 DRTS-KSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK-KPSFQ 89
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 35.0 bits (79), Expect = 0.044 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 Y D+G RG F + S +E + L+G ++ GR++RV P +R Sbjct: 265 YHFDNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAER 316
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 35.0 bits (79), Expect = 0.044 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D+ +G+S+GF F+ Y A+ N +G+ + GR IRV Sbjct: 70 DKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 35.0 bits (79), Expect = 0.044 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 D + + RGF FV + ++ +AI N++ ++ GR IRV VA Sbjct: 4 DYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 35.0 bits (79), Expect = 0.044 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D+ +G+S+GF F+ Y A+ N +G+ + GR IRV Sbjct: 70 DKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 34.7 bits (78), Expect = 0.057 Identities = 14/44 (31%), Positives = 28/44 (63%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 ++G+S+GFGFV + + +E AI+ + + G+ + V +A+ K Sbjct: 356 ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 399 Score = 33.5 bits (75), Expect = 0.13 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 ++G+S+GFGFV + AI L+G+ L+G++I V Sbjct: 160 ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV 197 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 G+ +GFGFV Y ++ A+ L+ +L+G ++ V A+ K Sbjct: 255 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKK 296
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 34.7 bits (78), Expect = 0.057 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 S GFGFV Y ++ A+ L G +DG ++ V ++E Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 802
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 34.7 bits (78), Expect = 0.057 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 D D+G S+G+ F+ + S D + AI ++G L R I V+ A K + R Sbjct: 135 DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186 Score = 33.9 bits (76), Expect = 0.098 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAES 171 DR +G+ +G+GFV + S ++ + AI ++ + L G+ IRV A + Sbjct: 47 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASA 91
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 34.7 bits (78), Expect = 0.057 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D + + +GFGFVT + DE AI++L+G L R ++V+ SK Sbjct: 318 DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF*DILT 210 D+ +G SRG GF+ + E AI L+G G +TV + Q+ +LT Sbjct: 159 DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLT 216
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 34.7 bits (78), Expect = 0.057 Identities = 18/46 (39%), Positives = 28/46 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D + + +GFGFVT + DE AI++L+G L R ++V+ SK Sbjct: 318 DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF*DILT 210 D+ +G SRG GF+ + E AI L+G G +TV + Q+ +LT Sbjct: 159 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLT 216
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 34.7 bits (78), Expect = 0.057 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D + RSRGF F+ + + A + G+++DGR+IRV Sbjct: 131 DAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRV 170
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + DE AI++L+G L R ++V+ +K Sbjct: 336 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG GF+ + E AI L+G G +TV Sbjct: 171 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 34.7 bits (78), Expect = 0.057 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 D SGRS+G+G+V + + + A++ ++DGR + + ++ +P Sbjct: 297 DGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D SGR +GFG+VT+ D + ++G + GR R+ Sbjct: 400 DPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRL 438
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 ++ S RGFG+VT+ ++V A+ + +G +I VTVA+ K R + + Sbjct: 37 EKGSKACRGFGYVTFSMLEDVQRALKEI--TTFEGCKINVTVAKKKLRNKTK 86 Score = 31.6 bits (70), Expect = 0.48 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 40 RDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 + G+ RGFGFV + + E A+ ++ ++ GR + V A +K + Sbjct: 147 KPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDK 193
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + DE AI++L+G L R ++V+ +K Sbjct: 310 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG GF+ + E AI L+G G +TV Sbjct: 159 DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + DE AI++L+G L R ++V+ +K Sbjct: 310 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG GF+ + E AI L+G G +TV Sbjct: 159 DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + DE AI++L+G L R ++V+ +K Sbjct: 310 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG GF+ + E AI L+G G +TV Sbjct: 159 DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 34.7 bits (78), Expect = 0.057 Identities = 16/53 (30%), Positives = 31/53 (58%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 D+D+ + +GF +V + D + A++ DG L R +RV +AE + +++ F Sbjct: 74 DKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGDRSLRVDIAEGRKQDKGGF 125
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 34.7 bits (78), Expect = 0.057 Identities = 16/53 (30%), Positives = 31/53 (58%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 D+D+ + +GF +V + D + A++ DG L R +RV +AE + +++ F Sbjct: 74 DKDTDKFKGFCYVEFDEVDSLKEALT-YDGALLGDRSLRVDIAEGRKQDKGGF 125
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + DE AI++L+G L R ++V+ +K Sbjct: 331 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG GF+ + E AI L+G G +TV Sbjct: 166 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + DE AI++L+G L R ++V+ +K Sbjct: 324 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG GF+ + E AI L+G G +TV Sbjct: 159 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 34.7 bits (78), Expect = 0.057 Identities = 17/46 (36%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + DE AI++L+G L R ++V+ +K Sbjct: 311 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 356 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG GF+ + E AI L+G G +TV Sbjct: 159 DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 34.3 bits (77), Expect = 0.075 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 D+++G+ +G V+Y A+ DG D G +++V++A KP Sbjct: 402 DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 448
>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated RNA-binding| fly homolog) (P19) Length = 399 Score = 34.3 bits (77), Expect = 0.075 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 ++++G S+G VTY + +AI DG D +G I+V++A+ Sbjct: 162 NKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLAQ 205
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 34.3 bits (77), Expect = 0.075 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA--ESKPR 180 DR +G+SRG+GFVT + A + + + +DGR+ V +A +KPR Sbjct: 66 DRQTGKSRGYGFVTMADRAAADRACKDPNPI-IDGRKANVNLAYLGAKPR 114
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 34.3 bits (77), Expect = 0.075 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAES 171 + SRGF F Y SA E +A+S L G L GR++ + A++ Sbjct: 739 NSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQA 780 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQ 186 S GFGFV + S + A +DG LDG ++++ ++ E+ Sbjct: 650 SMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEE 693
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 34.3 bits (77), Expect = 0.075 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKP 177 D+++G+ +G V+Y A+ DG D G +++V++A KP Sbjct: 403 DKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 449
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 33.9 bits (76), Expect = 0.098 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +1 Query: 40 RDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 RD RGFGFV + + ++A+ LDG +L ++ + A ++ R R Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGR 80
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 33.9 bits (76), Expect = 0.098 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 159 S+G+ +V + + DE A+ ++DG +DG++I T Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 33.9 bits (76), Expect = 0.098 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 159 S+G+ +V + + DE A+ ++DG +DG++I T Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 33.9 bits (76), Expect = 0.098 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 159 S+G+ +V + + DE A+ ++DG +DG++I T Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 33.9 bits (76), Expect = 0.098 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 159 S+G+ +V + + DE A+ ++DG +DG++I T Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 33.9 bits (76), Expect = 0.098 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 159 S+G+ +V + + DE A+ ++DG +DG++I T Sbjct: 202 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 236
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 33.9 bits (76), Expect = 0.098 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 S+GFGFVT+ ++ + + A L G ++GR+I V A ++ Sbjct: 154 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 193
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 33.9 bits (76), Expect = 0.098 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 S+GFGFVT+ ++ + + A L G ++GR+I V A ++ Sbjct: 155 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 194
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 33.9 bits (76), Expect = 0.098 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA--ESKPR 180 DR +G+SRG+GFVT A + + + +DGR+ V +A +KPR Sbjct: 45 DRQTGKSRGYGFVTMADRAAAERACKDPNPI-IDGRKANVNLAYLGAKPR 93
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 33.9 bits (76), Expect = 0.098 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +1 Query: 40 RDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 RD RGFGFV + + ++A+ LDG +L ++ + A ++ R R Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGR 80 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +1 Query: 67 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 G V + S ++ NAI L G +++GR+I++ + R + R Sbjct: 147 GVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHRSRSR 188
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 33.9 bits (76), Expect = 0.098 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D SGR F FV + + +A+ DG + DGR+IRV Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRV 78
>NOT4_YEAST (P34909) General negative regulator of transcription subunit 4| Length = 587 Score = 33.9 bits (76), Expect = 0.098 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +1 Query: 55 SRGFG-FVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 S G+G ++T+GS D+ I+ +DG +DGR I+ +K Sbjct: 193 SPGYGVYITFGSKDDAARCIAQVDGTYMDGRLIKAAYGTTK 233
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 33.9 bits (76), Expect = 0.098 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +1 Query: 40 RDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 RD RGFGFV + + ++A+ LDG +L ++ + A ++ R R Sbjct: 31 RDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGR 80 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +1 Query: 67 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 G V + S ++ NAI L G +++GR+I++ + R Sbjct: 147 GVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSR 187
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 33.9 bits (76), Expect = 0.098 Identities = 18/54 (33%), Positives = 31/54 (57%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF*DI 204 ++GRS+G+GFV+Y S + + AI ++ L + I V+ A + + R DI Sbjct: 135 ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDI 188
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 33.9 bits (76), Expect = 0.098 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 S+GFGFVT+ ++ + + A L G ++GR+I V A ++ Sbjct: 159 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 198
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 33.9 bits (76), Expect = 0.098 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 ++ S RGFG+VT+ ++V A+ + +G +I VTVA+ K R + + Sbjct: 37 EKGSKACRGFGYVTFSMLEDVQRALKEI--TTFEGCKIDVTVAKKKLRNKSK 86
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 33.9 bits (76), Expect = 0.098 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 S GFGFV Y ++ A+ L G +DG ++ V ++E Sbjct: 773 SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE 810
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/52 (34%), Positives = 30/52 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 D GR + G + + S ++ A+ LDG +++GR+IR + E KP +RR Sbjct: 134 DAHKGR-KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR--LVEDKPGSRRR 182
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 D DSG S+GF F+ + S + + A+ ++G L R I V+ A + + R Sbjct: 135 DVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGER 186 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAES 171 DR + +GFGFV + ++ + AI L+ + L G+ I+V A + Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASA 91
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 D + RSRGFGF+TY + V+ A N + +DG+ + A +P + R Sbjct: 66 DAATKRSRGFGFITYTKSLMVDRAQENRPHI-IDGKTVEAKRALPRPERESR 116
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 33.5 bits (75), Expect = 0.13 Identities = 13/37 (35%), Positives = 25/37 (67%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 S GFGFV + + ++ N I+ +DG +DG +I++ ++ Sbjct: 708 SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLS 744 Score = 31.2 bits (69), Expect = 0.63 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 +RGF FV + E NA+ L GV L GR++ + AE Sbjct: 802 ARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVMQYAE 839
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/52 (34%), Positives = 30/52 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 D GR + G + + S ++ A+ LDG +++GR+IR + E KP +RR Sbjct: 134 DAHKGR-KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIR--LVEDKPGSRRR 182
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 33.1 bits (74), Expect = 0.17 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D + RSRGFGFVTY +EV+ ++S +DGR + A S+ R Sbjct: 61 DPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGRVVEPKRAVSREDSAR 110 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 152 DRQSGKKRGFAFVTFDDHDTVDKIV 176
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 33.1 bits (74), Expect = 0.17 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 S G+GFV + + + A+ L+G ++DG+ + V A+ + R Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQRGAEDDR 624
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/53 (26%), Positives = 28/53 (52%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRRF 195 D ++G +G+GF + ++ A+ L+ +L R+IRV + PR + + Sbjct: 41 DPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSNDPRRNQSY 93
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 33.1 bits (74), Expect = 0.17 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPRE 183 +RGF FV + E NA+ L GV L GR++ + E P + Sbjct: 791 ARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVEQDPED 833 Score = 31.6 bits (70), Expect = 0.48 Identities = 12/37 (32%), Positives = 24/37 (64%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 S GFGF + + ++ N IS ++G LDG ++++ ++ Sbjct: 696 SMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLS 732
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 33.1 bits (74), Expect = 0.17 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D + RSRGFGFVTY +EV+ ++S +DGR + A S+ R Sbjct: 61 DPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGRVVEPKRAVSREDSAR 110 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 152 DRQSGKKRGFAFVTFDDHDTVDKIV 176
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 32.7 bits (73), Expect = 0.22 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGFGFVT+ D V+ + Sbjct: 134 DRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAIS----NLDGVDLDGRQIRVTVAESKP 177 D S RSRGFGFVT+ S EV+ A++ ++DG ++ ++ KP Sbjct: 43 DPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP 93
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 32.7 bits (73), Expect = 0.22 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 YDR SGRS G V + + A+ +GV LDGR + + + S+ QRR Sbjct: 138 YDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRR 189
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 32.7 bits (73), Expect = 0.22 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGFGFVT+ D V+ + Sbjct: 146 DRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAIS----NLDGVDLDGRQIRVTVAESKP 177 D S RSRGFGFVT+ S EV+ A++ ++DG ++ ++ KP Sbjct: 55 DPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKP 105
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 32.7 bits (73), Expect = 0.22 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +1 Query: 67 GFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 G + + S ++ A+ LDG +++GR IR + E KPR R Sbjct: 149 GVIEFRSYSDMKRALDKLDGTEINGRNIR--LIEDKPRTSHR 188
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 32.7 bits (73), Expect = 0.22 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPRE 183 D+++GR++GF FV+Y D A LDG + +R SKPR+ Sbjct: 236 DKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEF--SKPRD 282
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 32.7 bits (73), Expect = 0.22 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPRE 183 ++++G+SRG FVT+ S + A+ LDG +RV ++ K +E Sbjct: 226 NKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPKVKE 274
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 32.7 bits (73), Expect = 0.22 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 YDR SGRS G V + + A+ +GV LDGR + + + S+ QRR Sbjct: 137 YDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR 188
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 32.7 bits (73), Expect = 0.22 Identities = 12/44 (27%), Positives = 26/44 (59%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D S GFGF+ + + ++ I+ +DG +DG +I++ ++ + Sbjct: 653 DKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQ 696 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +RGF FV + E NA+ L GV L GR++ + AE + Sbjct: 751 ARGFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAEQE 790
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 61 GFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 GF FV + + +A+ LDG + G ++RV ++ PR R Sbjct: 77 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 119
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 32.3 bits (72), Expect = 0.28 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAIS----NLDGVDLDGRQIRVTVAESKP 177 D S RSRGFGFVT+ +EV+ A+S +DG ++ ++ +KP Sbjct: 43 DPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKP 93 Score = 32.0 bits (71), Expect = 0.37 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 D+ SG+ RGFGFVT+ D V+ + Sbjct: 134 DKQSGKKRGFGFVTFNDHDPVDKIV 158
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV-AESKPREQ 186 YD+ G G+GF++Y + + I L+G ++G + + E K RE+ Sbjct: 228 YDKTKGEPNGYGFISYPLGSQASLCIKELNGRTVNGSTLFINYHVERKERER 279 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 150 D G SRG+GFV++ S + AI N DG + Q+ Sbjct: 593 DLPVGSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQV 630
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +1 Query: 40 RDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 RD GFGFV + + +A+ +L+G +L G RV + SKPR Sbjct: 30 RDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGGE--RVILDYSKPR 74
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 32.3 bits (72), Expect = 0.28 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIR 153 +D +GRS+G+ F+ + + +A+ NL+G L R ++ Sbjct: 51 FDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 90
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +D S+GF +V Y D A NLDG GR + + A K Sbjct: 328 FDTRFTTSKGFAYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQK 374 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +RGFGF + SA E NA+ L L GR++ + A + Sbjct: 736 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANEE 775
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 32.3 bits (72), Expect = 0.28 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +1 Query: 61 GFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 GF FV + + +A+ LDG + G ++RV ++ PR R Sbjct: 48 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 90
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 32.3 bits (72), Expect = 0.28 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVA 165 S GFGFV + + ++ IS +DG +DG +I++ ++ Sbjct: 685 SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLS 721 Score = 32.0 bits (71), Expect = 0.37 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +RGF FV + E NA+ L GV L GR++ + AE + Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQPAEQE 816 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAES 171 G+SR F F+ Y + + +A++ DG + +I V +A+S Sbjct: 50 GKSRRFAFIGYKNEQDALDAVNYFDGSFIYTSKIEVDMAKS 90
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 D + RSRGFGFVTY +EV+ A+ Sbjct: 69 DPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 160 DRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 D + RSRGFGFVTY +EV+ A+ Sbjct: 69 DPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 160 DRQSGKKRGFAFVTFDDHDTVDKIV 184
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +1 Query: 58 RGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 R +GFV +V +AI L+G +DG+ ++V V+ S+ R Sbjct: 119 RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVR 159
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 32.0 bits (71), Expect = 0.37 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 150 D + RSRGFGF+TY + ++NA N +DGR + Sbjct: 58 DPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTV 94 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 D+D+G+ RGF F+ + D V+ I Sbjct: 149 DKDTGKKRGFAFIEFDDYDPVDKII 173
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 32.0 bits (71), Expect = 0.37 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 D + RSRGFGFVTY +EV+ A+ Sbjct: 69 DPQTKRSRGFGFVTYSCVEEVDAAM 93 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 DR SG+ RGF FVT+ D V+ + Sbjct: 160 DRQSGKKRGFAFVTFDDHDTVDKIV 184
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +1 Query: 61 GFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 GF FV + + +A LDG G +IRV ++ + R++RR Sbjct: 48 GFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRR 91
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 32.0 bits (71), Expect = 0.37 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 S+GFGFVT + A L G ++GR+I V A ++ ++ Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKK 235
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/38 (34%), Positives = 24/38 (63%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 ++G+S+G G V + SA+ A ++G+ + GR+I V Sbjct: 548 ENGKSKGCGTVRFESAESAEKACRIMNGIKISGREIDV 585 Score = 31.2 bits (69), Expect = 0.63 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE-SKPREQRRF*DILT 210 D+D G+SRG G VT+ A E AIS +G L R + V + + S P E R D T Sbjct: 258 DKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHEDYRSHDSKT 315
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 31.6 bits (70), Expect = 0.48 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +D S S+GF +V Y D A LDG GR + + A +K Sbjct: 334 FDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILPATAK 380 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +RGFGF + SA E NA+ L L GR++ + A + Sbjct: 741 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANEE 780 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQ--IRVTVAESKPREQRR 192 S GFGFV + + + A++ +DG LD + +R + E+RR Sbjct: 642 SMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERR 689
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/46 (32%), Positives = 29/46 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D ++ + +GFGFVT + +E AI++L+G L + ++V+ +K Sbjct: 278 DFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +G SRG F+ + E AI++ +G G +TV Sbjct: 140 DQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITV 181
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/38 (44%), Positives = 24/38 (63%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 150 D S RSRGFGFVT+ +EV+ A++ +DGR + Sbjct: 43 DPASKRSRGFGFVTFSCMNEVDAAMATRPHT-IDGRVV 79 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAI 111 D+ SG+ RGF FVT+ D V+ + Sbjct: 134 DKQSGKKRGFAFVTFDDHDPVDKIV 158
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAES--KPRE 183 DR+ G++RGFGFV++ +D+ A +G + R ++++ A S KP E Sbjct: 64 DRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVKPNE 113
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 31.6 bits (70), Expect = 0.48 Identities = 16/48 (33%), Positives = 31/48 (64%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 D+ +G +GFG+V + + D V+ A+ L+ +L GR++RV + +K + Sbjct: 321 DKMTGIGKGFGYVLFENTDSVHLAL-KLNNSELMGRKLRVMRSVNKEK 367
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +1 Query: 58 RGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 + FGFV S E + AI NL L+G + V +++ KP+ Sbjct: 35 KNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNVEMSKGKPK 75
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 31.6 bits (70), Expect = 0.48 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE-SKPREQRR 192 D+D G+SRG G VT+ A E AIS +G L R + V + + S P E+ R Sbjct: 267 DKD-GKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSVPHEEYR 318 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 ++G+S+G G V + S + A ++G+ + GR+I V Sbjct: 557 ENGKSKGCGTVRFDSPESAEKACRIMNGIKISGREIDV 594
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 31.6 bits (70), Expect = 0.48 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 D + RSRGF F+ + + + A G+++DGR+IRV Sbjct: 139 DAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRV 178
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/53 (37%), Positives = 27/53 (50%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 YDR SGRS G V + + A+ GV LDGR + + + S+ QRR Sbjct: 108 YDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQRR 159
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 31.2 bits (69), Expect = 0.63 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG--RQIRVTVAE 168 D+ +GR RG FV Y +E AIS L+ V +G + + V +AE Sbjct: 245 DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE 290
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 31.2 bits (69), Expect = 0.63 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQR 189 D+D+G+ +G V++ AI DG + G I+V+ A +P R Sbjct: 276 DKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPEFMR 326
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 31.2 bits (69), Expect = 0.63 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +1 Query: 61 GFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV--AESKPREQRR 192 GF FV + + + +A +LDG ++G +R+ V A KPR R Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDR 81
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 31.2 bits (69), Expect = 0.63 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 150 D + RSRGFGF+TY A V++A N +DGR + Sbjct: 51 DPKTKRSRGFGFITYSRAHMVDDA-QNARPHKVDGRVV 87
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 31.2 bits (69), Expect = 0.63 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDL-DGRQIRV 156 +G +RG+ FVT+ + E NAI L+ ++ +GR + V Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGV 129
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDG 141 D+ +GR RG FV Y +E AIS L+ V +G Sbjct: 247 DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 281
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 30.8 bits (68), Expect = 0.83 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRV 156 S GFGFV + + D+ A+ +DG LD +I V Sbjct: 644 SMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISV 677 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 SRGF F + +A E NA ++L + GR++ + A+++ Sbjct: 743 SRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVIDFAQAE 782
>YN26_YEAST (P53830) Hypothetical 32.3 kDa protein in SEC21-MRPL10 intergenic| region Length = 285 Score = 30.8 bits (68), Expect = 0.83 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = +1 Query: 4 NRKGA*C*GXYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPRE 183 NR G Y D G +G +TY + V AI ++ G+QIRV A+ + +E Sbjct: 75 NRDGEPLCKLYVNDKGAFKGDALITYSKEESVTLAIEMMNESIFLGKQIRVERAQFQNKE 134
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/50 (26%), Positives = 26/50 (52%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 DSG+ +GF F+ + + + N + + + GR +R+ E + + Q R Sbjct: 275 DSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVR 324
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 30.8 bits (68), Expect = 0.83 Identities = 10/32 (31%), Positives = 22/32 (68%) Frame = +1 Query: 55 SRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 150 S+G+ +V + + +E A+ ++DG +DG++I Sbjct: 179 SKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 30.8 bits (68), Expect = 0.83 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +1 Query: 52 RSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 R RGF +V + + +A+ NLD + GRQI + A+ Sbjct: 49 RPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQ 87
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 30.8 bits (68), Expect = 0.83 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +1 Query: 52 RSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 R RGF +V + + +A+ NLD + GRQI + A+ Sbjct: 49 RPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQ 87
>ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)| Length = 443 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/45 (28%), Positives = 27/45 (60%) Frame = +1 Query: 49 GRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPRE 183 GR+ GFGFV+Y + +AI ++G ++ + ++V + + + E Sbjct: 395 GRNSGFGFVSYDNVISAQHAIQFMNGYFVNNKYLKVQLKKGETVE 439
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 D + SRG+GFV + ++ +A++ + G R IRV +A K + Sbjct: 221 DPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSK 268
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 D+ +GR RG FV + +E AIS L+ V +G +TV Sbjct: 222 DKLTGRPRGVAFVRFNKREEAQEAISALNNVIPEGASQPLTV 263
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D+ + S+ FGFV+Y + AI +++G + ++++V + SK Sbjct: 435 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 480
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 D+ + S+ FGFV+Y + AI +++G + ++++V + SK Sbjct: 435 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 480
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 30.8 bits (68), Expect = 0.83 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 +SG S+G+GFV + + A L+G+ + ++I V AE K RR Sbjct: 420 NSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRR 469
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 150 D ++GRSRGFGF+ + A V + + LDGR I Sbjct: 102 DPNTGRSRGFGFILFKDAASVEKVLDQKEH-RLDGRVI 138
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 61 GFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 GF FV + + +A+ LDG L G ++RV ++ + R + R Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 61 GFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPREQRR 192 GF FV + + +A+ LDG L G ++RV ++ + R + R Sbjct: 47 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNR 90
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/25 (44%), Positives = 19/25 (76%) Frame = +1 Query: 52 RSRGFGFVTYGSADEVNNAISNLDG 126 R RGFGFV++ +A++ + AI ++G Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNG 280
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 +G RGFG+V + + D V+ A+ L+ +L GR++RV + +K + Sbjct: 328 TGVGRGFGYVLFENTDAVHLAL-KLNNSELMGRKLRVMRSVNKEK 371
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/42 (33%), Positives = 27/42 (64%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 159 YDR++G +G+G++ + S A+ L+G +L G++I V+ Sbjct: 97 YDRNTGTPKGYGYIEFESPAYREKAL-QLNGGELKGKKIAVS 137
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 150 D ++GRSRGFGF+ + + V + + LDGR I Sbjct: 109 DPNTGRSRGFGFILFKDSSSVEKVLDQKEH-RLDGRVI 145
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 ++G+S+G G V + S + A ++G+ L GR+I V + Sbjct: 646 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 685 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 D+D G+SRG G VT+ + E AIS +G L R + V + E Sbjct: 197 DKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 239
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/45 (35%), Positives = 29/45 (64%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESKPR 180 +G RGFG+V + + D V+ A+ L+ +L GR++RV + +K + Sbjct: 322 TGVGRGFGYVLFENTDAVHLAL-KLNNSELMGRKLRVMRSVNKEK 365
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 ++G+S+G G V + S + A ++G+ L GR+I V + Sbjct: 685 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 724 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 D+D G+SRG G VT+ + E AIS +G L R + V + E Sbjct: 236 DKD-GKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 278
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +1 Query: 43 DSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTV 162 ++G+S+G G V + S + A ++G+ L GR+I V + Sbjct: 686 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 725 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 D+D G+SRG G VT+ + E AIS +G L R + V + E Sbjct: 237 DKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 279
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDL 135 +G +RG+ FVT+ + E NAI L+ ++ Sbjct: 92 NGNNRGYAFVTFSNKQEAKNAIKQLNNYEI 121
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%) Frame = +1 Query: 37 DRDSGRSRGFGFVTYGSADEVNNAISN----LDGVDLDGRQ 147 D + RSRGFGFVT+ EV+ A+ +DG +D ++ Sbjct: 57 DPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKR 97
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 58 RGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAE 168 R + FV + + D+ + A+S LDGR IR+ A+ Sbjct: 121 RPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAK 157
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDL-DGRQIRV 156 +G +RG+ FVT+ + E NAI L+ ++ +GR + V Sbjct: 92 NGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGV 129
>ECR1_METKA (Q8TYC0) Probable exosome complex RNA-binding protein 1| Length = 239 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/27 (55%), Positives = 20/27 (74%) Frame = +1 Query: 76 TYGSADEVNNAISNLDGVDLDGRQIRV 156 TY S DEV + ++ L VD+DGR+IRV Sbjct: 31 TYTSGDEVYSKVTGL--VDIDGRRIRV 55
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +D+ + R RGFGFVT+ S D V + + +++ + + A+ K Sbjct: 142 FDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPK 187
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +D+ + R RGFGFVT+ S D V + + +++ + + A+ K Sbjct: 142 FDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPK 187
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 34 YDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVTVAESK 174 +D+ + R RGFGFVT+ S D V + + +++ + + A+ K Sbjct: 142 FDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPK 187
>DNAA_XANOR (Q5H715) Chromosomal replication initiator protein dnaA| Length = 443 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -2 Query: 93 ISRAIGDEAKAPRPAAVPVIXTLASSTFPV 4 ++ A+G +AP PA PV T+A P+ Sbjct: 71 VALAVGSRPRAPEPAPAPVAATIAPQAAPI 100
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = +1 Query: 46 SGRSRGFGFVTYGSADEVNNAISNLDGVDL-DGRQIRV 156 +G +RG+ FVT+ + E NAI L+ ++ +GR + V Sbjct: 92 NGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGV 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,228,502 Number of Sequences: 219361 Number of extensions: 851957 Number of successful extensions: 2757 Number of sequences better than 10.0: 284 Number of HSP's better than 10.0 without gapping: 2541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2753 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
