ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal27b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190784.1| Oryza sativa (japonica cultivar-group), predic... 147 2e-32
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 147 2e-32
3dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic D... 147 2e-32
4dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic D... 147 2e-32
5dbj|AK104275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 2e-32
6dbj|AK071827.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 2e-32
7dbj|AK058284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 2e-32
8gb|AY291061.1| Zea mays photosystem II subunit PsbS precursor, m... 111 1e-21
9gb|AY104328.1| Zea mays PCO078649 mRNA sequence 111 1e-21
10ref|XM_474468.1| Oryza sativa (japonica cultivar-group), predic... 100 5e-18
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 5e-18
12dbj|AK071638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 5e-18
13emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 5e-18
14dbj|D84392.1| Oryza sativa (japonica cultivar-group) PSII-S mRNA... 100 5e-18
15emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 100 5e-18
16gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7... 44 0.24
17ref|NM_116941.1| Arabidopsis thaliana unknown protein AT4G08710 ... 42 0.93
18emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, comp... 42 0.93
19gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 0.93
20emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, ... 42 0.93
21emb|AL161813.1|ATT32A17 Arabidopsis thaliana DNA chromosome 4, B... 42 0.93
22ref|NM_001027047.1| Caenorhabditis elegans F59B10.4a (F59B10.4) ... 42 0.93
23ref|NM_001027048.1| Caenorhabditis elegans F59B10.4b (F59B10.4) ... 42 0.93
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
25dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
26dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
27dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
28dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
29dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.93
31emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311... 42 0.93
32emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 42 0.93
33ref|NM_126075.4| Arabidopsis thaliana transcription factor AT5G6... 40 3.7
34gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.7
35gb|AY772449.1| Rhodococcus equi strain 103+ heat shock protein (... 40 3.7
36ref|XM_953430.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.7
37ref|XM_330473.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.7
38gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 3.7
39gb|AC144797.2| Mus musculus BAC clone RP24-349B2 from chromosome... 40 3.7
40ref|XM_656577.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.7
41ref|XM_569485.1| Cryptococcus neoformans var. neoformans JEC21 t... 40 3.7
42gb|AF043697.2| Caenorhabditis elegans cosmid F56C11, complete se... 40 3.7
43ref|XM_790314.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.7
44gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 3.7
45emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.7
46emb|AJ318872.1|GGN318872 Gnetum gnemon partial mRNA for putative... 40 3.7
47gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 3.7
48gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map... 40 3.7
49gb|AY062538.1| Arabidopsis thaliana SCARECROW gene regulator (At... 40 3.7
50gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 3.7
51gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosom... 40 3.7
52dbj|AK035292.1| Mus musculus adult male urinary bladder cDNA, RI... 40 3.7
53gb|AY150563.1| Aspergillus nidulans SipA3 gene, complete cds 40 3.7
54emb|BX830446.1|CNS0A04D Arabidopsis thaliana Full-length cDNA Co... 40 3.7
55emb|BX832347.1|CNS09ZLX Arabidopsis thaliana Full-length cDNA Co... 40 3.7
56gb|AC084645.1|CBRG45L11 Caenorhabditis briggsae cosmid G45L11, c... 40 3.7
57gb|AC084449.1|AC084449 Caenorhabditis briggsae cosmid CB021P23, ... 40 3.7
58gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.7
59gb|BT002580.1| Arabidopsis thaliana SCARECROW gene regulator (At... 40 3.7
60gb|AF163841.3|AF163841 Myxococcus xanthus 4-oxalocrotonate decar... 40 3.7
61dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 3.7
62emb|AJ519722.2|YEN519722 Yersinia enterocolitica partial cryptic... 40 3.7
63dbj|AB026647.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 3.7
64dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.7
65emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 3.7
66gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 3.7 
>ref|NM_190784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 807

 Score =  147 bits (74), Expect = 2e-32
 Identities = 96/102 (94%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
           ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 700 cccatcaacgag-atcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgc 758

                                                     
Query: 63  catcaaccccggcaccggcaagttcatcagcggcgaggacga 104
           ||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 759 catcaaccccggcaccggcaagttcgtcagcgacgacgacga 800
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  147 bits (74), Expect = 2e-32
 Identities = 96/102 (94%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                            
Query: 3        cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
                ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 37692562 cccatcaacgag-atcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgc 37692620

                                                          
Query: 63       catcaaccccggcaccggcaagttcatcagcggcgaggacga 104
                ||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 37692621 catcaaccccggcaccggcaagttcgtcagcgacgacgacga 37692662



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 156      gtacgtacgtgctttgcctgtttgt 180
                |||||||||||||||||| ||||||
Sbjct: 29256918 gtacgtacgtgctttgccggtttgt 29256942
to top
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0677H08
          Length = 178830

 Score =  147 bits (74), Expect = 2e-32
 Identities = 96/102 (94%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                          
Query: 3      cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
              ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 153036 cccatcaacgag-atcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgc 153094

                                                        
Query: 63     catcaaccccggcaccggcaagttcatcagcggcgaggacga 104
              ||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 153095 catcaaccccggcaccggcaagttcgtcagcgacgacgacga 153136
to top
>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039A07
          Length = 148892

 Score =  147 bits (74), Expect = 2e-32
 Identities = 96/102 (94%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                         
Query: 3     cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
             ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20863 cccatcaacgag-atcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgc 20921

                                                       
Query: 63    catcaaccccggcaccggcaagttcatcagcggcgaggacga 104
             ||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 20922 catcaaccccggcaccggcaagttcgtcagcgacgacgacga 20963
to top
>dbj|AK104275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B11, full
           insert sequence
          Length = 1055

 Score =  147 bits (74), Expect = 2e-32
 Identities = 96/102 (94%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
           ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 785 cccatcaacgag-atcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgc 843

                                                     
Query: 63  catcaaccccggcaccggcaagttcatcagcggcgaggacga 104
           ||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 844 catcaaccccggcaccggcaagttcgtcagcgacgacgacga 885
to top
>dbj|AK071827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118A05, full
           insert sequence
          Length = 1057

 Score =  147 bits (74), Expect = 2e-32
 Identities = 96/102 (94%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
           ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 788 cccatcaacgag-atcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgc 846

                                                     
Query: 63  catcaaccccggcaccggcaagttcatcagcggcgaggacga 104
           ||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 847 catcaaccccggcaccggcaagttcgtcagcgacgacgacga 888
to top
>dbj|AK058284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D09, full
           insert sequence
          Length = 1064

 Score =  147 bits (74), Expect = 2e-32
 Identities = 96/102 (94%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
           ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 785 cccatcaacgag-atcgagccgctcgtcctcttcaacgtcgtcttcttcttcatcgccgc 843

                                                     
Query: 63  catcaaccccggcaccggcaagttcatcagcggcgaggacga 104
           ||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 844 catcaaccccggcaccggcaagttcgtcagcgacgacgacga 885
to top
>gb|AY291061.1| Zea mays photosystem II subunit PsbS precursor, mRNA, complete cds;
           nuclear gene for chloroplast product
          Length = 1024

 Score =  111 bits (56), Expect = 1e-21
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccg 61
           |||||||| |||| || |||||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 701 gcccatcaacgag-atagagccgctcgtcatcttcaacgtcctcttcttcttcatcgccg 759

                                                   
Query: 62  ccatcaaccccggcaccggcaagttcatcagcggcgagga 101
           |||||||||||||||  |||| |||||||| |||||||||
Sbjct: 760 ccatcaaccccggcaatggcaggttcatcatcggcgagga 799
to top
>gb|AY104328.1| Zea mays PCO078649 mRNA sequence
          Length = 1252

 Score =  111 bits (56), Expect = 1e-21
 Identities = 90/100 (90%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccg 61
           |||||||| |||| || |||||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 891 gcccatcaacgag-atagagccgctcgtcatcttcaacgtcctcttcttcttcatcgccg 949

                                                   
Query: 62  ccatcaaccccggcaccggcaagttcatcagcggcgagga 101
           |||||||||||||||  |||| |||||||| |||||||||
Sbjct: 950 ccatcaaccccggcaatggcaggttcatcatcggcgagga 989
to top
>ref|XM_474468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 747

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 93/106 (87%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
           ||||||| |||| |||||||||||| | ||||||||| || ||||||||||| |||||||
Sbjct: 637 cccatcaacgag-atcgagccgctcctcctcttcaacatcctcttcttcttcttcgccgc 695

                                                         
Query: 63  catcaaccccggcaccggcaagttcatcagcggcgaggacgacgac 108
           |||||||||||| |||||||||||| ||| || |||  ||||||||
Sbjct: 696 catcaaccccggaaccggcaagttcgtcaccgacgacaacgacgac 741
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 93/106 (87%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                            
Query: 3        cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
                ||||||| |||| |||||||||||| | ||||||||| || ||||||||||| |||||||
Sbjct: 35372991 cccatcaacgag-atcgagccgctcctcctcttcaacatcctcttcttcttcttcgccgc 35373049

                                                              
Query: 63       catcaaccccggcaccggcaagttcatcagcggcgaggacgacgac 108
                |||||||||||| |||||||||||| ||| || |||  ||||||||
Sbjct: 35373050 catcaaccccggaaccggcaagttcgtcaccgacgacaacgacgac 35373095
to top
>dbj|AK071638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101I15, full
           insert sequence
          Length = 1116

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 93/106 (87%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
           ||||||| |||| |||||||||||| | ||||||||| || ||||||||||| |||||||
Sbjct: 801 cccatcaacgag-atcgagccgctcctcctcttcaacatcctcttcttcttcttcgccgc 859

                                                         
Query: 63  catcaaccccggcaccggcaagttcatcagcggcgaggacgacgac 108
           |||||||||||| |||||||||||| ||| || |||  ||||||||
Sbjct: 860 catcaaccccggaaccggcaagttcgtcaccgacgacaacgacgac 905
to top
>emb|AL732342.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0518A01, complete
            sequence
          Length = 32686

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 93/106 (87%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                        
Query: 3    cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
            ||||||| |||| |||||||||||| | ||||||||| || ||||||||||| |||||||
Sbjct: 4821 cccatcaacgag-atcgagccgctcctcctcttcaacatcctcttcttcttcttcgccgc 4879

                                                          
Query: 63   catcaaccccggcaccggcaagttcatcagcggcgaggacgacgac 108
            |||||||||||| |||||||||||| ||| || |||  ||||||||
Sbjct: 4880 catcaaccccggaaccggcaagttcgtcaccgacgacaacgacgac 4925
to top
>dbj|D84392.1| Oryza sativa (japonica cultivar-group) PSII-S mRNA for 22 kDa
           protein of photosystem II precursor, complete cds
          Length = 1108

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 93/106 (87%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
           ||||||| |||| |||||||||||| | ||||||||| || ||||||||||| |||||||
Sbjct: 785 cccatcaacgag-atcgagccgctcctcctcttcaacatcctcttcttcttcttcgccgc 843

                                                         
Query: 63  catcaaccccggcaccggcaagttcatcagcggcgaggacgacgac 108
           |||||||||||| |||||||||||| ||| || |||  ||||||||
Sbjct: 844 catcaaccccggaaccggcaagttcgtcaccgacgacaacgacgac 889
to top
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
              complete sequence
          Length = 173770

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 93/106 (87%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                          
Query: 3      cccatcagcgagnatcgagccgctcgtgctcttcaacgtcgtcttcttcttcatcgccgc 62
              ||||||| |||| |||||||||||| | ||||||||| || ||||||||||| |||||||
Sbjct: 168835 cccatcaacgag-atcgagccgctcctcctcttcaacatcctcttcttcttcttcgccgc 168893

                                                            
Query: 63     catcaaccccggcaccggcaagttcatcagcggcgaggacgacgac 108
              |||||||||||| |||||||||||| ||| || |||  ||||||||
Sbjct: 168894 catcaaccccggaaccggcaagttcgtcaccgacgacaacgacgac 168939
to top
>gb|AE014842.1| Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete
             sequence
          Length = 253151

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 32    tcttcaacgtcgtcttcttcttcatc 57
             |||||||||||| |||||||||||||
Sbjct: 10597 tcttcaacgtcgacttcttcttcatc 10622
to top
>ref|NM_116941.1| Arabidopsis thaliana unknown protein AT4G08710 mRNA, complete cds
          Length = 2148

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   tcaacgtcgtcttcttcttca 55
            |||||||||||||||||||||
Sbjct: 1502 tcaacgtcgtcttcttcttca 1482
to top
>emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, complete sequence
          Length = 27428

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 35    tcaacgtcgtcttcttcttcatcgccgccatca 67
             ||||| || ||||||||||||||||| ||||||
Sbjct: 14254 tcaacatcttcttcttcttcatcgccaccatca 14222
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 51      cttcatcgccgccatcaaccccggcaccg 79
               ||||| |||||||||||||| ||||||||
Sbjct: 2855819 cttcaccgccgccatcaaccgcggcaccg 2855847
to top
>emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 24
          Length = 199362

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 35     tcaacgtcgtcttcttcttca 55
              |||||||||||||||||||||
Sbjct: 151385 tcaacgtcgtcttcttcttca 151365
to top
>emb|AL161813.1|ATT32A17 Arabidopsis thaliana DNA chromosome 4, BAC clone T32A17 (ESSA project)
          Length = 104386

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    tcaacgtcgtcttcttcttca 55
             |||||||||||||||||||||
Sbjct: 27113 tcaacgtcgtcttcttcttca 27093
to top
>ref|NM_001027047.1| Caenorhabditis elegans F59B10.4a (F59B10.4) mRNA, complete cds
          Length = 824

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 35  tcaacgtcgtcttcttcttcatcgccgccatca 67
           ||||| || ||||||||||||||||| ||||||
Sbjct: 714 tcaacatcttcttcttcttcatcgccaccatca 746
to top
>ref|NM_001027048.1| Caenorhabditis elegans F59B10.4b (F59B10.4) mRNA, complete cds
          Length = 1033

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 35  tcaacgtcgtcttcttcttcatcgccgccatca 67
           ||||| || ||||||||||||||||| ||||||
Sbjct: 648 tcaacatcttcttcttcttcatcgccaccatca 680
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 39      cgtcgtcttcttcttcatcgccgcc 63
               |||||||||||||||| ||||||||
Sbjct: 1088763 cgtcgtcttcttcttcttcgccgcc 1088787
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 39       cgtcgtcttcttcttcatcgccgcc 63
                |||||||||||||||| ||||||||
Sbjct: 24532715 cgtcgtcttcttcttcctcgccgcc 24532739
to top
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 156   gtacgtacgtgctttgcctgtttgt 180
             |||||||||||||||||| ||||||
Sbjct: 35781 gtacgtacgtgctttgccggtttgt 35805
to top
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0684B02
          Length = 132470

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 156    gtacgtacgtgctttgcctgtttgt 180
              |||||||||||||||||| ||||||
Sbjct: 102705 gtacgtacgtgctttgccggtttgt 102729
to top
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0040H10
          Length = 173301

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 39    cgtcgtcttcttcttcatcgccgcc 63
             |||||||||||||||| ||||||||
Sbjct: 15908 cgtcgtcttcttcttcctcgccgcc 15932
to top
>dbj|AP003609.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0012B02
          Length = 149807

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 39     cgtcgtcttcttcttcatcgccgcc 63
              |||||||||||||||| ||||||||
Sbjct: 144188 cgtcgtcttcttcttcctcgccgcc 144212
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 39      cgtcgtcttcttcttcatcgccgcc 63
               |||||||||||||||| ||||||||
Sbjct: 1088763 cgtcgtcttcttcttcttcgccgcc 1088787
to top
>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 39    cgtcgtcttcttcttcatcgccgcc 63
             |||||||||||||||| ||||||||
Sbjct: 84035 cgtcgtcttcttcttcttcgccgcc 84059
to top
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 39    cgtcgtcttcttcttcatcgccgcc 63
             |||||||||||||||| ||||||||
Sbjct: 27746 cgtcgtcttcttcttcttcgccgcc 27770
to top
>ref|NM_126075.4| Arabidopsis thaliana transcription factor AT5G66770 mRNA, complete
           cds
          Length = 2295

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  acgtcgtcttcttcttcatc 57
           ||||||||||||||||||||
Sbjct: 946 acgtcgtcttcttcttcatc 965
to top
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     tcgtcttcttcttcatcgccgcca 64
              ||||| ||||||||||||||||||
Sbjct: 607961 tcgtcctcttcttcatcgccgcca 607984
to top
>gb|AY772449.1| Rhodococcus equi strain 103+ heat shock protein (htrA) gene, complete
            cds
          Length = 1680

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   cgccgccatcaaccccggca 76
            ||||||||||||||||||||
Sbjct: 1132 cgccgccatcaaccccggca 1151
to top
>ref|XM_953430.1| Neurospora crassa OR74A hypothetical protein (NCU09824.1) partial
            mRNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 41   tcgtcttcttcttcatcgccgcca 64
            ||||||||||||||| ||||||||
Sbjct: 1586 tcgtcttcttcttcaccgccgcca 1563
to top
>ref|XM_330473.1| Neurospora crassa OR74A hypothetical protein (NCU09824.1) partial
            mRNA
          Length = 2448

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 41   tcgtcttcttcttcatcgccgcca 64
            ||||||||||||||| ||||||||
Sbjct: 1586 tcgtcttcttcttcaccgccgcca 1563
to top
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      cgccgccatcaaccccggca 76
               ||||||||||||||||||||
Sbjct: 5243739 cgccgccatcaaccccggca 5243720



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      cgccgccatcaaccccggca 76
               ||||||||||||||||||||
Sbjct: 1734180 cgccgccatcaaccccggca 1734161
to top
>gb|AC144797.2| Mus musculus BAC clone RP24-349B2 from chromosome 16, complete sequence
          Length = 129045

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tacttaggtgtaagaagaag 223
             ||||||||||||||||||||
Sbjct: 36372 tacttaggtgtaagaagaag 36353
to top
>ref|XM_656577.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4065.2), mRNA
          Length = 1797

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cgtcgtcttcttcttcatcg 58
           ||||||||||||||||||||
Sbjct: 241 cgtcgtcttcttcttcatcg 222
to top
>ref|XM_569485.1| Cryptococcus neoformans var. neoformans JEC21 translation
           initiation factor (CNC02150) partial mRNA
          Length = 1613

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 41  tcgtcttcttcttcatcgccgcca 64
           ||||| ||||||||||||||||||
Sbjct: 999 tcgtcctcttcttcatcgccgcca 976
to top
>gb|AF043697.2| Caenorhabditis elegans cosmid F56C11, complete sequence
          Length = 41615

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    caacgtcgtcttcttcttca 55
             ||||||||||||||||||||
Sbjct: 12841 caacgtcgtcttcttcttca 12860
to top
>ref|XM_790314.1| PREDICTED: Strongylocentrotus purpuratus similar to splicing factor
           3a, subunit 1 (LOC590717), partial mRNA
          Length = 1523

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cgtcgtcttcttcttcatcg 58
           ||||||||||||||||||||
Sbjct: 967 cgtcgtcttcttcttcatcg 948
to top
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     gcaccggcaagttcatcagcggcg 97
              ||||||||||||||| ||||||||
Sbjct: 402355 gcaccggcaagttcaccagcggcg 402332
to top
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 57     cgccgccatcaaccccggcaccggcaag 84
              |||| |||||||||||| ||||||||||
Sbjct: 122077 cgcctccatcaaccccgccaccggcaag 122050
to top
>emb|AJ318872.1|GGN318872 Gnetum gnemon partial mRNA for putative BEL1-like protein (melbel2
           gene)
          Length = 1295

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  cgtcgtcttcttcttcatcg 58
           ||||||||||||||||||||
Sbjct: 248 cgtcgtcttcttcttcatcg 229
to top
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      cgccgccatcaaccccggca 76
               ||||||||||||||||||||
Sbjct: 4044179 cgccgccatcaaccccggca 4044198
to top
>gb|AC007187.5| Arabidopsis thaliana chromosome 2 clone F7E22 map mi421, complete
             sequence
          Length = 98432

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    tcaacgtcgtcttcttcttc 54
             ||||||||||||||||||||
Sbjct: 52612 tcaacgtcgtcttcttcttc 52631
to top
>gb|AY062538.1| Arabidopsis thaliana SCARECROW gene regulator (At5g66770; MUD21.1)
           mRNA, complete cds
          Length = 2225

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  acgtcgtcttcttcttcatc 57
           ||||||||||||||||||||
Sbjct: 942 acgtcgtcttcttcttcatc 961
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      cgccgccatcaaccccggca 76
               ||||||||||||||||||||
Sbjct: 3453249 cgccgccatcaaccccggca 3453230
to top
>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete
           sequence
          Length = 180876

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 tacttaggtgtaagaagaag 223
           ||||||||||||||||||||
Sbjct: 339 tacttaggtgtaagaagaag 358
to top
>dbj|AK035292.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530010N18 product:WDR9 PROTEIN,
           FORM B homolog [Homo sapiens], full insert sequence
          Length = 2511

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 204 tacttaggtgtaagaagaag 223
           ||||||||||||||||||||
Sbjct: 660 tacttaggtgtaagaagaag 679
to top
>gb|AY150563.1| Aspergillus nidulans SipA3 gene, complete cds
          Length = 6209

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  cgtcgtcttcttcttcatcg 58
           ||||||||||||||||||||
Sbjct: 773 cgtcgtcttcttcttcatcg 792
to top
>emb|BX830446.1|CNS0A04D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB82ZC01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1970

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  acgtcgtcttcttcttcatc 57
           ||||||||||||||||||||
Sbjct: 921 acgtcgtcttcttcttcatc 940
to top
>emb|BX832347.1|CNS09ZLX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH66ZH07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1983

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  acgtcgtcttcttcttcatc 57
           ||||||||||||||||||||
Sbjct: 945 acgtcgtcttcttcttcatc 964
to top
>gb|AC084645.1|CBRG45L11 Caenorhabditis briggsae cosmid G45L11, complete sequence
          Length = 41337

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tcgtcttcttcttcatcgcc 60
             ||||||||||||||||||||
Sbjct: 24717 tcgtcttcttcttcatcgcc 24698
to top
>gb|AC084449.1|AC084449 Caenorhabditis briggsae cosmid CB021P23, complete sequence
          Length = 90243

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 32    tcttcaacgtcgtcttcttcttcatcgc 59
             |||||| |||||||||||||||| ||||
Sbjct: 81456 tcttcatcgtcgtcttcttcttcttcgc 81483
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      cgccgccatcaaccccggca 76
               ||||||||||||||||||||
Sbjct: 2030050 cgccgccatcaaccccggca 2030031
to top
>gb|BT002580.1| Arabidopsis thaliana SCARECROW gene regulator (At5g66770) mRNA,
           complete cds
          Length = 2019

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 38  acgtcgtcttcttcttcatc 57
           ||||||||||||||||||||
Sbjct: 790 acgtcgtcttcttcttcatc 809
to top
>gb|AF163841.3|AF163841 Myxococcus xanthus 4-oxalocrotonate decarboxylase-like protein,
             cysteine dioxygenase-like protein, putative histidine
             protein kinase (hpkA), putative serine/threonine protein
             kinase (pknD1), putative histidine protein kinase (espA),
             putative membrane protein (espB), putative
             serine/threonine protein kinase (pknD2), putative serine
             protease DO-like precursor (htrA), and putative response
             regulator genes, complete cds; and unknown genes
          Length = 18424

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    cgccgccatcaaccccggca 76
             ||||||||||||||||||||
Sbjct: 16417 cgccgccatcaaccccggca 16398
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      cgccgccatcaaccccggca 76
               ||||||||||||||||||||
Sbjct: 1258200 cgccgccatcaaccccggca 1258181
to top
>emb|AJ519722.2|YEN519722 Yersinia enterocolitica partial cryptic plasmid p29930
          Length = 40303

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    cgccgccatcaaccccggca 76
             ||||||||||||||||||||
Sbjct: 37581 cgccgccatcaaccccggca 37562
to top
>dbj|AB026647.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJL12
          Length = 81542

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   aacaagagctagcagctaat 263
             ||||||||||||||||||||
Sbjct: 54406 aacaagagctagcagctaat 54425
to top
>dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21
          Length = 69850

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   acgtcgtcttcttcttcatc 57
            ||||||||||||||||||||
Sbjct: 4023 acgtcgtcttcttcttcatc 4042
to top
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      tcgtcttcttcttcatcgcc 60
               ||||||||||||||||||||
Sbjct: 1544736 tcgtcttcttcttcatcgcc 1544717



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    agatcggcaccggcacgcgc 129
              ||||||||||||||||||||
Sbjct: 452176 agatcggcaccggcacgcgc 452195
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     cgccgccatcaaccccggca 76
              ||||||||||||||||||||
Sbjct: 935462 cgccgccatcaaccccggca 935443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,784,483
Number of Sequences: 3902068
Number of extensions: 2784483
Number of successful extensions: 65753
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65038
Number of HSP's gapped (non-prelim): 715
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top