Clone Information

BLAST Search Result

Clone Name	baal26m02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC137622.2\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.009
2	gb\|AC135430.2\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.009
3	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.009
4	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.009
5	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.009
6	gb\|DQ009988.1\| Oryza sativa (japonica cultivar-group) dsRNA bind...	50	0.009
7	dbj\|AK121852.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.009
8	dbj\|AK103543.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.009
9	dbj\|AK072444.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.009
10	dbj\|AK063961.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.009
11	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.009
12	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.009
13	emb\|BX000510.1\|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769...	50	0.009
14	emb\|BX000493.1\|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb...	50	0.009
15	emb\|BX000492.1\|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa...	50	0.009
16	dbj\|AB036988.1\| Oryza sativa (japonica cultivar-group) mRNA for ...	50	0.009
17	ref\|XM_656748.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	42	2.2
18	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	42	2.2
19	dbj\|AP004953.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	42	2.2
20	gb\|AC073264.5\| Homo sapiens BAC clone RP11-298A10 from 7, comple...	40	8.6
21	emb\|AL133214.12\| Human DNA sequence from clone RP11-163F8 on chr...	40	8.6
22	gb\|AC021074.15\| Homo sapiens 3 BAC RP11-372E1 (Roswell Park Canc...	40	8.6
23	emb\|Z68144.1\|SPAC3H1 S. pombe chromosome I cosmid c3H1	40	8.6
24	emb\|BX548154.1\|CNS09SBK clone A24K23, A41I8 of Tetraodon nigrovi...	40	8.6
25	gb\|AC087490.6\| Homo sapiens chromosome 15, clone RP11-810H22, co...	40	8.6
26	gb\|AC103750.2\| Homo sapiens chromosome 15, clone RP11-494F2, com...	40	8.6
27	emb\|BX572609.1\|CNS09SBP Tetraodon nigroviridis BAC sequence	40	8.6
28	gb\|AC135611.25\| Pan troglodytes clone rp43-14h17, complete sequence	40	8.6
29	dbj\|AP007154.1\| Aspergillus oryzae RIB40 genomic DNA, SC001	40	8.6
30	gb\|AC016830.5\| Homo sapiens chromosome 22 clone b81b3 map 22q11,...	40	8.6
31	gb\|AC016027.15\| Homo sapiens chromosome 22 clone b476c20 map 22q...	40	8.6
32	gb\|AC124309.7\| Homo sapiens chromosome 15, clone RP11-41H23, com...	40	8.6
33	dbj\|AP003059.2\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	8.6
34	gb\|AC116390.13\| Mus musculus chromosome 15, clone RP23-78N1, com...	40	8.6

>gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0118N20, complete sequence
          Length = 146139

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 538   gctgcaatggtgcaacctaatgatgaagctaga 570
             |||||| ||||||||||| ||||||||||||||
Sbjct: 75109 gctgcattggtgcaacctgatgatgaagctaga 75077



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 30    aaaggatgagactggagtgcctggagatgctcatcattcagatgtcc 76
             |||||||||  || ||||| |||||||||||||| |||| |||||||
Sbjct: 75299 aaaggatgaagctagagtggctggagatgctcatgattctgatgtcc 75253



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 411   cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
             ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 75116 cagtgacgctgcattggtgcaacctgatgatgaagctaga 75077



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 545   tggtgcaacctaatgatgaagcta 568
             |||||||||||||||| |||||||
Sbjct: 75045 tggtgcaacctaatgaggaagcta 75022

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>gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0671E09,
             complete sequence
          Length = 158472

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 538   gctgcaatggtgcaacctaatgatgaagctaga 570
             |||||| ||||||||||| ||||||||||||||
Sbjct: 26539 gctgcattggtgcaacctgatgatgaagctaga 26507



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 30    aaaggatgagactggagtgcctggagatgctcatcattcagatgtcc 76
             |||||||||  || ||||| |||||||||||||| |||| |||||||
Sbjct: 26729 aaaggatgaagctagagtggctggagatgctcatgattctgatgtcc 26683



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 411   cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
             ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 26546 cagtgacgctgcattggtgcaacctgatgatgaagctaga 26507



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 545   tggtgcaacctaatgatgaagcta 568
             |||||||||||||||| |||||||
Sbjct: 26475 tggtgcaacctaatgaggaagcta 26452

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 538    gctgcaatggtgcaacctaatgatgaagctaga 570
              |||||| ||||||||||| ||||||||||||||
Sbjct: 535708 gctgcattggtgcaacctgatgatgaagctaga 535676



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                          
Query: 535    gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
              |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 535594 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 535535

                           
Query: 595    gacactgcaatgc 607
              || ||||||||||
Sbjct: 535534 gatactgcaatgc 535522



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 411    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 535715 cagtgacgctgcattggtgcaacctgatgatgaagctaga 535676



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 545    tggtgcaacctaatgatgaagcta 568
              |||||||||||||||| |||||||
Sbjct: 535644 tggtgcaacctaatgaggaagcta 535621

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 538    gctgcaatggtgcaacctaatgatgaagctaga 570
              |||||| ||||||||||| ||||||||||||||
Sbjct: 457015 gctgcattggtgcaacctgatgatgaagctaga 456983



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                          
Query: 535    gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
              |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 456901 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 456842

                           
Query: 595    gacactgcaatgc 607
              || ||||||||||
Sbjct: 456841 gatactgcaatgc 456829



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 411    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 457022 cagtgacgctgcattggtgcaacctgatgatgaagctaga 456983

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 538      gctgcaatggtgcaacctaatgatgaagctaga 570
                |||||| ||||||||||| ||||||||||||||
Sbjct: 13809037 gctgcattggtgcaacctgatgatgaagctaga 13809005



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 30       aaaggatgagactggagtgcctggagatgctcatcattcagatgtcc 76
                |||||||||  || ||||| |||||||||||||| |||| |||||||
Sbjct: 13809227 aaaggatgaagctagagtggctggagatgctcatgattctgatgtcc 13809181



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 411      cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
                ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 13809044 cagtgacgctgcattggtgcaacctgatgatgaagctaga 13809005



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 545      tggtgcaacctaatgatgaagcta 568
                |||||||||||||||| |||||||
Sbjct: 13808973 tggtgcaacctaatgaggaagcta 13808950

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>gb|DQ009988.1| Oryza sativa (japonica cultivar-group) dsRNA binding protein RBP
            (RBP) mRNA, complete cds
          Length = 1233

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                        
Query: 535  gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
            |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 1045 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 1104

                         
Query: 595  gacactgcaatgc 607
            || ||||||||||
Sbjct: 1105 gatactgcaatgc 1117



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 538 gctgcaatggtgcaacctaatgatgaagctaga 570
           |||||| ||||||||||| ||||||||||||||
Sbjct: 931 gctgcattggtgcaacctgatgatgaagctaga 963



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 411 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
           ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 924 cagtgacgctgcattggtgcaacctgatgatgaagctaga 963

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>dbj|AK121852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101N14, full
            insert sequence
          Length = 1826

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                        
Query: 535  gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
            |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 1127 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 1186

                         
Query: 595  gacactgcaatgc 607
            || ||||||||||
Sbjct: 1187 gatactgcaatgc 1199



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 538  gctgcaatggtgcaacctaatgatgaagctaga 570
            |||||| ||||||||||| ||||||||||||||
Sbjct: 1013 gctgcattggtgcaacctgatgatgaagctaga 1045



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 411  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 1006 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1045

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>dbj|AK103543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132D17, full
            insert sequence
          Length = 1752

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 538  gctgcaatggtgcaacctaatgatgaagctaga 570
            |||||| ||||||||||| ||||||||||||||
Sbjct: 988  gctgcattggtgcaacctgatgatgaagctaga 1020



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 535  gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcagga 584
            |||||||||||  |||||||||| || ||||||  | |||||||||||||
Sbjct: 1102 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcagga 1151



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 456  aaagcaggaaccactcatcggcactgcaatgc 487
            ||||||||||||| ||||||  ||||||||||
Sbjct: 1143 aaagcaggaaccattcatcgatactgcaatgc 1174



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 428  tgcaacctgatgatgaaggtagaagaggaaagcaggaaccactcatcg 475
            |||||||| |||| |||| || ||| || ||||||||||||| |||||
Sbjct: 1055 tgcaacctaatgaggaagctataagtggtaagcaggaaccacccatcg 1102



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 545  tggtgcaacctaatgatgaagcta 568
            |||||||||||||||| |||||||
Sbjct: 1052 tggtgcaacctaatgaggaagcta 1075



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 411  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 981  cagtgacgctgcattggtgcaacctgatgatgaagctaga 1020

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>dbj|AK072444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111A18, full
            insert sequence
          Length = 1903

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 538  gctgcaatggtgcaacctaatgatgaagctaga 570
            |||||| ||||||||||| ||||||||||||||
Sbjct: 1275 gctgcattggtgcaacctgatgatgaagctaga 1307



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 30   aaaggatgagactggagtgcctggagatgctcatcattcagatgtcc 76
            |||||||||  || ||||| |||||||||||||| |||| |||||||
Sbjct: 1085 aaaggatgaagctagagtggctggagatgctcatgattctgatgtcc 1131



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 545  tggtgcaacctaatgatgaagcta 568
            |||||||||||||||| |||||||
Sbjct: 1339 tggtgcaacctaatgaggaagcta 1362



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 411  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 1268 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1307

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>dbj|AK063961.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G10, full
            insert sequence
          Length = 1829

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                        
Query: 535  gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
            |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 1125 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 1184

                         
Query: 595  gacactgcaatgc 607
            || ||||||||||
Sbjct: 1185 gatactgcaatgc 1197



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 538  gctgcaatggtgcaacctaatgatgaagctaga 570
            |||||| ||||||||||| ||||||||||||||
Sbjct: 1011 gctgcattggtgcaacctgatgatgaagctaga 1043



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 411  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 1004 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1043

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 538    gctgcaatggtgcaacctaatgatgaagctaga 570
              |||||| ||||||||||| ||||||||||||||
Sbjct: 457015 gctgcattggtgcaacctgatgatgaagctaga 456983



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                          
Query: 535    gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
              |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 456901 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 456842

                           
Query: 595    gacactgcaatgc 607
              || ||||||||||
Sbjct: 456841 gatactgcaatgc 456829



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 411    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 457022 cagtgacgctgcattggtgcaacctgatgatgaagctaga 456983

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 538    gctgcaatggtgcaacctaatgatgaagctaga 570
              |||||| ||||||||||| ||||||||||||||
Sbjct: 535708 gctgcattggtgcaacctgatgatgaagctaga 535676



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                          
Query: 535    gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
              |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 535594 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 535535

                           
Query: 595    gacactgcaatgc 607
              || ||||||||||
Sbjct: 535534 gatactgcaatgc 535522



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 411    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 535715 cagtgacgctgcattggtgcaacctgatgatgaagctaga 535676



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 545    tggtgcaacctaatgatgaagcta 568
              |||||||||||||||| |||||||
Sbjct: 535644 tggtgcaacctaatgaggaagcta 535621

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>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 115859

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                          
Query: 535    gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
              |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 113249 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 113308

                           
Query: 595    gacactgcaatgc 607
              || ||||||||||
Sbjct: 113309 gatactgcaatgc 113321



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 538    gctgcaatggtgcaacctaatgatgaagctaga 570
              |||||| ||||||||||| ||||||||||||||
Sbjct: 113135 gctgcattggtgcaacctgatgatgaagctaga 113167



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 545    tggtgcaacctaatgatgaagcta 568
              |||||||||||||||| |||||||
Sbjct: 113199 tggtgcaacctaatgaggaagcta 113222



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 411    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 113128 cagtgacgctgcattggtgcaacctgatgatgaagctaga 113167

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>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 130544

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                          
Query: 535    gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
              |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 113411 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 113470

                           
Query: 595    gacactgcaatgc 607
              || ||||||||||
Sbjct: 113471 gatactgcaatgc 113483



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 538    gctgcaatggtgcaacctaatgatgaagctaga 570
              |||||| ||||||||||| ||||||||||||||
Sbjct: 113297 gctgcattggtgcaacctgatgatgaagctaga 113329



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 411    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 113290 cagtgacgctgcattggtgcaacctgatgatgaagctaga 113329

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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                         
Query: 535   gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
             |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 11178 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 11237

                          
Query: 595   gacactgcaatgc 607
             || ||||||||||
Sbjct: 11238 gatactgcaatgc 11250



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 538   gctgcaatggtgcaacctaatgatgaagctaga 570
             |||||| ||||||||||| ||||||||||||||
Sbjct: 11064 gctgcattggtgcaacctgatgatgaagctaga 11096



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 545   tggtgcaacctaatgatgaagcta 568
             |||||||||||||||| |||||||
Sbjct: 11128 tggtgcaacctaatgaggaagcta 11151



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 411   cagtgacacagcaatgctgcaacctgatgatgaaggtaga 450
             ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 11057 cagtgacgctgcattggtgcaacctgatgatgaagctaga 11096

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>dbj|AB036988.1| Oryza sativa (japonica cultivar-group) mRNA for dsRNA-binding protein
            ODB1, complete cds
          Length = 1772

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                        
Query: 535  gatgctgcaatggtgcaacctaatgatgaagctagatgtgtaaagcaggagctactaatt 594
            |||||||||||  |||||||||| || ||||||  | ||||||||||||||| | | || 
Sbjct: 1104 gatgctgcaattctgcaacctaaagaggaagcttcaagtgtaaagcaggagccattcatc 1163

                         
Query: 595  gacactgcaatgc 607
            || ||||||||||
Sbjct: 1164 gatactgcaatgc 1176



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 538  gctgcaatggtgcaacctaatgatgaagctaga 570
            |||||| ||||||||||| ||||||||||||||
Sbjct: 990  gctgcattggtgcaacctgatgatgaagctaga 1022

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>ref|XM_656748.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4236.2), mRNA
          Length = 1398

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 607  cctctccccaatgaggaagcc 627
            |||||||||||||||||||||
Sbjct: 1138 cctctccccaatgaggaagcc 1158

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 1       aagaagaatggccaagaagtt 21
               |||||||||||||||||||||
Sbjct: 5915427 aagaagaatggccaagaagtt 5915447

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>dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34A24, TM0129,
             complete sequence
          Length = 110487

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 127   atgcaacctgatgaagaagct 147
             |||||||||||||||||||||
Sbjct: 45485 atgcaacctgatgaagaagct 45465

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>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence
          Length = 200123

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   tccccaatgaggaagccgga 630
             ||||||||||||||||||||
Sbjct: 36869 tccccaatgaggaagccgga 36888

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>emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chromosome 9p21.2-23
             Contains the 3' end of a novel gene (FLJ20276), the 5' end
             of the SH3GL2 gene for SH3-domain GRB2-like 2 (CNSA2,
             SH3P4, EEN-B1, SH3D2A), a poly(A)-binding protein
             pseudogene and a CpG Island, complete sequence
          Length = 154621

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   gctacaaaagtaggacagga 284
             ||||||||||||||||||||
Sbjct: 84492 gctacaaaagtaggacagga 84473

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>gb|AC021074.15| Homo sapiens 3 BAC RP11-372E1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 183100

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     aagaatggccaagaagttaa 23
             ||||||||||||||||||||
Sbjct: 69803 aagaatggccaagaagttaa 69822

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>emb|Z68144.1|SPAC3H1 S. pombe chromosome I cosmid c3H1
          Length = 36920

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   tgatgaagacgctttgccattcga 218
             ||||||||||||||||| ||||||
Sbjct: 10212 tgatgaagacgctttgctattcga 10189

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>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis
          Length = 265677

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 443    aaggtagaagaggaaagcaggaac 466
              |||||||||||||| |||||||||
Sbjct: 204721 aaggtagaagaggagagcaggaac 204698

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>gb|AC087490.6| Homo sapiens chromosome 15, clone RP11-810H22, complete sequence
          Length = 183342

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    ggaagatagaagagtgggag 520
              ||||||||||||||||||||
Sbjct: 175190 ggaagatagaagagtgggag 175209

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>gb|AC103750.2| Homo sapiens chromosome 15, clone RP11-494F2, complete sequence
          Length = 179486

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 501   ggaagatagaagagtgggag 520
             ||||||||||||||||||||
Sbjct: 92534 ggaagatagaagagtgggag 92515

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>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence
          Length = 265677

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 443    aaggtagaagaggaaagcaggaac 466
              |||||||||||||| |||||||||
Sbjct: 204721 aaggtagaagaggagagcaggaac 204698

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>gb|AC135611.25| Pan troglodytes clone rp43-14h17, complete sequence
          Length = 215721

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 445    ggtagaagaggaaagcaggaacca 468
              ||||||||||||||||||| ||||
Sbjct: 107298 ggtagaagaggaaagcaggcacca 107321

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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 345    accggccggtaacactgcaa 364
              ||||||||||||||||||||
Sbjct: 947976 accggccggtaacactgcaa 947995

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>gb|AC016830.5| Homo sapiens chromosome 22 clone b81b3 map 22q11, complete sequence
          Length = 192720

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 445   ggtagaagaggaaagcaggaacca 468
             ||||||||||||||||||| ||||
Sbjct: 20392 ggtagaagaggaaagcaggcacca 20415

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>gb|AC016027.15| Homo sapiens chromosome 22 clone b476c20 map 22q11, complete sequence
          Length = 174991

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 445   ggtagaagaggaaagcaggaacca 468
             ||||||||||||||||||| ||||
Sbjct: 15699 ggtagaagaggaaagcaggcacca 15722

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>gb|AC124309.7| Homo sapiens chromosome 15, clone RP11-41H23, complete sequence
          Length = 132586

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 501  ggaagatagaagagtgggag 520
            ||||||||||||||||||||
Sbjct: 8129 ggaagatagaagagtgggag 8148

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>dbj|AP003059.2| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2005H7, complete
             sequence
          Length = 89000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   actgcaatgccccaacctca 497
             ||||||||||||||||||||
Sbjct: 45964 actgcaatgccccaacctca 45983

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>gb|AC116390.13| Mus musculus chromosome 15, clone RP23-78N1, complete sequence
          Length = 232133

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   agaggaaagcaggaaccact 470
             ||||||||||||||||||||
Sbjct: 63779 agaggaaagcaggaaccact 63760


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,316,872
Number of Sequences: 3902068
Number of extensions: 5316872
Number of successful extensions: 97376
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97008
Number of HSP's gapped (non-prelim): 368
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result