>gb|AY108840.1| Zea mays PCO078891 mRNA sequence
          Length = 457

 Score =  153 bits (77), Expect = 7e-34
 Identities = 148/172 (86%)
 Strand = Plus / Plus

                                                                       
Query: 15  ctactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaagttctcagt 74
           ||||||||||||||||||||| |||||| |||||||||| || ||||||||||| |||||
Sbjct: 1   ctactttctgataatgatggttgcatctattgggctcttagcgaagtcaaagttttcagt 60

                                                                       
Query: 75  ccacacatacttcgatagttggagcaggattttagttgaaggagttttggccggccttat 134
           | |  | |||||||||||||||| |||||||| | ||||||||||||| |  ||||| ||
Sbjct: 61  cnaggcgtacttcgatagttggaccaggatttcaattgaaggagtttttggtggcctgat 120

                                                               
Query: 135 gtccttcgtgctgttctggacattcgcgtacgatatcgtccacatcttctga 186
           ||| ||||||||||| |||||||| || || || || || ||||||||||||
Sbjct: 121 gtcattcgtgctgttttggacatttgcttatgacattgttcacatcttctga 172

>ref|NM_192067.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 342

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 147/180 (81%)
 Strand = Plus / Plus

                                                                       
Query: 7   ttcgtcttctactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaag 66
           ||||| |||||| ||||  |||||||||| ||||| |||||||| |||   ||| | || 
Sbjct: 163 ttcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgctgaaggccaaa 222

                                                                       
Query: 67  ttctcagtccacacatacttcgatagttggagcaggattttagttgaaggagttttggcc 126
           || ||| | || |||||||| || || |||| |||||||||  ||||||||||||| |  
Sbjct: 223 ttttcaattcatacatactttgacagctggaacaggattttgattgaaggagtttttggt 282

                                                                       
Query: 127 ggccttatgtccttcgtgctgttctggacattcgcgtacgatatcgtccacatcttctga 186
           ||||||||||| || |||||||| |||||||| ||||| ||||| || ||||||||||||
Sbjct: 283 ggccttatgtcttttgtgctgttttggacatttgcgtatgatattgtgcacatcttctga 342

>ref|NM_124331.2| Arabidopsis thaliana unknown protein AT5G49540 mRNA, complete cds
          Length = 705

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 127 ggccttatgtccttcgtgctgttctggacattcgcgta 164
           ||||||||||| || ||||||||||||||||| |||||
Sbjct: 426 ggccttatgtcgtttgtgctgttctggacatttgcgta 463

>gb|AY129476.1| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, complete cds
          Length = 345

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 127 ggccttatgtccttcgtgctgttctggacattcgcgta 164
           ||||||||||| || ||||||||||||||||| |||||
Sbjct: 286 ggccttatgtcgtttgtgctgttctggacatttgcgta 323

>gb|AF361850.1| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, complete cds
          Length = 639

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 127 ggccttatgtccttcgtgctgttctggacattcgcgta 164
           ||||||||||| || ||||||||||||||||| |||||
Sbjct: 360 ggccttatgtcgtttgtgctgttctggacatttgcgta 397

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Plus

                                                                            
Query: 7        ttcgtcttctactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaag 66
                ||||| |||||| ||||  |||||||||| ||||| |||||||| |||   ||| | || 
Sbjct: 28167930 ttcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgctgaaggccaaa 28167989

                                                                            
Query: 67       ttctcagtccacacatacttcgatagttggagcaggattttagttgaaggagttttggcc 126
                || ||| | || |||||||| || || |||| |||||||||  ||||||||||||| |  
Sbjct: 28167990 ttttcaattcatacatactttgacagctggaacaggattttgattgaaggagtttttggt 28168049

                         
Query: 127      ggccttatg 135
                |||||||||
Sbjct: 28168050 ggccttatg 28168058

>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0478H03
          Length = 167560

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Plus

                                                                        
Query: 7    ttcgtcttctactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaag 66
            ||||| |||||| ||||  |||||||||| ||||| |||||||| |||   ||| | || 
Sbjct: 2437 ttcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgctgaaggccaaa 2496

                                                                        
Query: 67   ttctcagtccacacatacttcgatagttggagcaggattttagttgaaggagttttggcc 126
            || ||| | || |||||||| || || |||| |||||||||  ||||||||||||| |  
Sbjct: 2497 ttttcaattcatacatactttgacagctggaacaggattttgattgaaggagtttttggt 2556

                     
Query: 127  ggccttatg 135
            |||||||||
Sbjct: 2557 ggccttatg 2565

>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0445E10
          Length = 145912

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Plus

                                                                         
Query: 7     ttcgtcttctactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaag 66
             ||||| |||||| ||||  |||||||||| ||||| |||||||| |||   ||| | || 
Sbjct: 51924 ttcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgctgaaggccaaa 51983

                                                                         
Query: 67    ttctcagtccacacatacttcgatagttggagcaggattttagttgaaggagttttggcc 126
             || ||| | || |||||||| || || |||| |||||||||  ||||||||||||| |  
Sbjct: 51984 ttttcaattcatacatactttgacagctggaacaggattttgattgaaggagtttttggt 52043

                      
Query: 127   ggccttatg 135
             |||||||||
Sbjct: 52044 ggccttatg 52052

>dbj|AK069481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020K18, full
           insert sequence
          Length = 2086

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 103/129 (79%)
 Strand = Plus / Plus

                                                                       
Query: 7   ttcgtcttctactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaag 66
           ||||| |||||| ||||  |||||||||| ||||| |||||||| |||   ||| | || 
Sbjct: 811 ttcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgctgaaggccaaa 870

                                                                       
Query: 67  ttctcagtccacacatacttcgatagttggagcaggattttagttgaaggagttttggcc 126
           || ||| | || |||||||| || || |||| |||||||||  ||||||||||||| |  
Sbjct: 871 ttttcaattcatacatactttgacagctggaacaggattttgattgaaggagtttttggt 930

                    
Query: 127 ggccttatg 135
           |||||||||
Sbjct: 931 ggccttatg 939

>gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete sequence
          Length = 168822

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 313   ctttattatccatttttgttgt 334
             ||||||||||||||||||||||
Sbjct: 80410 ctttattatccatttttgttgt 80389

>gb|AY142940.1| Heliobacillus mobilis DNA polymerase I gene, partial cds
          Length = 2796

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 6    cttcgtcttctactttctgata 27
            ||||||||||||||||||||||
Sbjct: 1054 cttcgtcttctactttctgata 1033

>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 341   cttttactgtctagtttggtgaact 365
             |||| ||||||||||||||||||||
Sbjct: 95009 ctttaactgtctagtttggtgaact 95033

>gb|AC139242.2| Mus musculus BAC clone RP23-435I6 from chromosome 13, complete sequence
          Length = 189431

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 187   gttctgatggaaggagagtctgatg 211
             ||||||||||| |||||||||||||
Sbjct: 53919 gttctgatggagggagagtctgatg 53943

>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 341    cttttactgtctagtttggtgaact 365
              |||| ||||||||||||||||||||
Sbjct: 135485 ctttaactgtctagtttggtgaact 135461

>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete
             sequence
          Length = 195710

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 187   gttctgatggaaggagagtctgatg 211
             ||||||||||| |||||||||||||
Sbjct: 79227 gttctgatggagggagagtctgatg 79203

>gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome 13, complete sequence
          Length = 218640

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   ctgtctagtttggtgaactg 366
             ||||||||||||||||||||
Sbjct: 56356 ctgtctagtttggtgaactg 56337

>gb|AC116997.3| Mus musculus BAC clone RP23-8J15 from chromosome 1, complete sequence
          Length = 190712

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 314   tttattatccatttttgttgttag 337
             |||||||| |||||||||||||||
Sbjct: 48036 tttattattcatttttgttgttag 48059

>gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, complete sequence
          Length = 143546

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   ctgtctagtttggtgaactg 366
             ||||||||||||||||||||
Sbjct: 63142 ctgtctagtttggtgaactg 63161

>gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, complete sequence
          Length = 182634

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    catcttctgatgggaggagc 248
              ||||||||||||||||||||
Sbjct: 171793 catcttctgatgggaggagc 171774

>gb|AC145475.1| Pan troglodytes BAC clone RP43-34K7 from 7, complete sequence
          Length = 136914

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    tcttctactttctgataatg 30
             ||||||||||||||||||||
Sbjct: 37218 tcttctactttctgataatg 37199

>emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on chromosome 6 Contains
            part of a novel gene, complete sequence
          Length = 160255

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 43   cttgggctcttggcaaagtc 62
            ||||||||||||||||||||
Sbjct: 4795 cttgggctcttggcaaagtc 4814

>emb|CR388090.9| Zebrafish DNA sequence from clone DKEY-267J14 in linkage group 8,
             complete sequence
          Length = 116021

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 323   catttttgttgttagttactttta 346
             |||||||||||||| |||||||||
Sbjct: 55240 catttttgttgttatttactttta 55263

>emb|AL645948.10| Mouse DNA sequence from clone RP23-298M7 on chromosome 11 Contains an H+
              transporting ATP synthase mitochondrial F0 complex subunit
              g (Atp5l) pseudogene, a ferritin light chain 1 (Ftl1)
              pseudogene, three novel genes, the gene for a novel ENTH
              domain containing protein, the 5' end of the Sox30 gene for
              SRY-box containing gene 30 and three Cpg islands, complete
              sequence
          Length = 207877

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 42     tcttgggctcttggcaaagtcaaa 65
              |||||||||||||| |||||||||
Sbjct: 120382 tcttgggctcttggaaaagtcaaa 120405

>emb|BX545915.7| Zebrafish DNA sequence from clone DKEY-41B16 in linkage group 3,
             complete sequence
          Length = 192468

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tttgttgttagttactttta 346
             ||||||||||||||||||||
Sbjct: 68331 tttgttgttagttactttta 68350

>gb|AC073587.6| Homo sapiens chromosome 10 clone RP11-572P18, complete sequence
          Length = 216523

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    tggaacaaaggagtctcctc 313
              ||||||||||||||||||||
Sbjct: 143594 tggaacaaaggagtctcctc 143613

>gb|AC104384.3| Homo sapiens chromosome 8, clone CTD-2381M20, complete sequence
          Length = 163996

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 471    aaacagctatactgctctat 490
              ||||||||||||||||||||
Sbjct: 105614 aaacagctatactgctctat 105595

>ref|XM_687344.1| PREDICTED: Danio rerio similar to gamma filamin (LOC563981), mRNA
          Length = 4512

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   tcttggcaaagtcaaagttc 69
            ||||||||||||||||||||
Sbjct: 2919 tcttggcaaagtcaaagttc 2938

>gb|AC087808.2| Homo sapiens chromosome 8, clone RP11-89A16, complete sequence
          Length = 189878

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 471    aaacagctatactgctctat 490
              ||||||||||||||||||||
Sbjct: 173307 aaacagctatactgctctat 173288

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 38       catctcttgggctcttggca 57
                ||||||||||||||||||||
Sbjct: 18878024 catctcttgggctcttggca 18878043

>emb|X68488.1|CPLRRNAB Claviceps purpurea mitochondrial DNA for large ribosomal RNA,
           strain W3
          Length = 1829

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  caggattttagttgaaggag 118
           ||||||||||||||||||||
Sbjct: 275 caggattttagttgaaggag 256

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     aggagtctcctctttattat 321
               ||||||||||||||||||||
Sbjct: 3384207 aggagtctcctctttattat 3384226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,496,462
Number of Sequences: 3902068
Number of extensions: 4496462
Number of successful extensions: 97238
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97090
Number of HSP's gapped (non-prelim): 148
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)