>ref|XM_549891.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 cgtctgctggagcgccgccgc 291
           |||||||||||||||||||||
Sbjct: 77  cgtctgctggagcgccgccgc 57

>gb|AC026123.24| Homo sapiens 16 BAC RP11-174D5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170088

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 154   gtggagctgaaggaactgatctaaa 178
             |||||| ||||||||||||||||||
Sbjct: 72297 gtggagatgaaggaactgatctaaa 72273

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    cgtctgctggagcgccgccgc 291
              |||||||||||||||||||||
Sbjct: 736946 cgtctgctggagcgccgccgc 736966

>gb|AC084058.6| Homo sapiens chromosome 16 clone CTD-2119F7, complete sequence
          Length = 160487

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 154    gtggagctgaaggaactgatctaaa 178
              |||||| ||||||||||||||||||
Sbjct: 122601 gtggagatgaaggaactgatctaaa 122577

>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   cgtctgctggagcgccgccgc 291
             |||||||||||||||||||||
Sbjct: 14146 cgtctgctggagcgccgccgc 14166

>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0032H19
          Length = 126434

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    cgtctgctggagcgccgccgc 291
              |||||||||||||||||||||
Sbjct: 120690 cgtctgctggagcgccgccgc 120710

>dbj|AK073168.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H13, full
           insert sequence
          Length = 2671

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 271 cgtctgctggagcgccgccgc 291
           |||||||||||||||||||||
Sbjct: 76  cgtctgctggagcgccgccgc 56

>gb|AC099975.11| Mus musculus chromosome 5, clone RP23-23A2, complete sequence
          Length = 213359

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    tggagctgaaggaactgatc 174
              ||||||||||||||||||||
Sbjct: 185557 tggagctgaaggaactgatc 185576

>gb|AC159406.1| Trypanosoma brucei chromosome 7 clone RPCI93-11L3, complete sequence
          Length = 63482

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 23   cttctgagggaactggtgga 42
            ||||||||||||||||||||
Sbjct: 2531 cttctgagggaactggtgga 2550

>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     cttctgagggaactggtgga 42
              ||||||||||||||||||||
Sbjct: 523992 cttctgagggaactggtgga 524011

>gb|AC159447.1| Trypanosoma brucei chromosome 7 clone RPCI93-43M14, complete sequence
          Length = 128897

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     cttctgagggaactggtgga 42
              ||||||||||||||||||||
Sbjct: 109546 cttctgagggaactggtgga 109565

>gb|AC159433.1| Trypanosoma brucei chromosome 7 clone RPCI93-28I8, complete sequence
          Length = 153310

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    cttctgagggaactggtgga 42
             ||||||||||||||||||||
Sbjct: 10788 cttctgagggaactggtgga 10807

>gb|AC167696.2| Reniera sp. JGI-2005 clone JGIBAYC-5E8, complete sequence
          Length = 38144

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tagataaagtagtagtatat 329
            ||||||||||||||||||||
Sbjct: 8513 tagataaagtagtagtatat 8494

>ref|XM_819678.1| Trypanosoma brucei TREU927 clone RPCI93-43M14 methyltransferase
           (Tb927.7.2080) partial mRNA
          Length = 3153

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 23  cttctgagggaactggtgga 42
           ||||||||||||||||||||
Sbjct: 124 cttctgagggaactggtgga 105

>gb|AC116383.11| Mus musculus chromosome 5, clone RP23-15P21, complete sequence
          Length = 259299

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tggagctgaaggaactgatc 174
             ||||||||||||||||||||
Sbjct: 87248 tggagctgaaggaactgatc 87267

>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence
          Length = 105004

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   ttatgagtatatgtttatat 529
             ||||||||||||||||||||
Sbjct: 87473 ttatgagtatatgtttatat 87454

>gb|AC025183.5| Homo sapiens chromosome 5 clone CTD-2194D22, complete sequence
          Length = 52443

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ccatgaagttccatgaagtg 216
             ||||||||||||||||||||
Sbjct: 38234 ccatgaagttccatgaagtg 38215

>gb|DQ397855.1| Cenarchaeum symbiosum clone C20G06, complete sequence
          Length = 39443

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  tgctggagcgccgccgccttgtag 298
            |||||||||||| |||||||||||
Sbjct: 3596 tgctggagcgcccccgccttgtag 3573

>gb|DQ397843.1| Cenarchaeum symbiosum clone C15C12, complete sequence
          Length = 41188

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   tgctggagcgccgccgccttgtag 298
             |||||||||||| |||||||||||
Sbjct: 37798 tgctggagcgcccccgccttgtag 37821

>gb|DQ397833.1| Cenarchaeum symbiosum clone C02E10, complete sequence
          Length = 42750

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 275   tgctggagcgccgccgccttgtag 298
             |||||||||||| |||||||||||
Sbjct: 12179 tgctggagcgcccccgccttgtag 12156

>gb|DQ397831.1| Cenarchaeum symbiosum clone C02C04, complete sequence
          Length = 42751

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   tgctggagcgccgccgccttgtag 298
             |||||||||||| |||||||||||
Sbjct: 30573 tgctggagcgcccccgccttgtag 30596

>gb|AC013267.11| Homo sapiens BAC clone RP11-284O8 from 2, complete sequence
          Length = 170378

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    gagggaactggtggacatgg 47
             ||||||||||||||||||||
Sbjct: 81265 gagggaactggtggacatgg 81246

>dbj|AB178027.1| Ralstonia solanacearum insertion sequence IS1424 DNA
          Length = 4442

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 271  cgtctgctggagcgccgccg 290
            ||||||||||||||||||||
Sbjct: 1740 cgtctgctggagcgccgccg 1759

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 271     cgtctgctggagcgccgccg 290
               ||||||||||||||||||||
Sbjct: 1436925 cgtctgctggagcgccgccg 1436944

>gb|AY108354.1| Zea mays PCO112404 mRNA sequence
          Length = 2108

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 115  gatgacctgtgcggcttccatgaatgggatccgctccttg 154
            |||||||| || ||| || ||||||||||||| |||||||
Sbjct: 1568 gatgacctatgtggcgtcaatgaatgggatcctctccttg 1607

>emb|AL845467.3| Mouse DNA sequence from clone RP23-435G20 on chromosome 2, complete
             sequence
          Length = 201400

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   aaccatgaagttccatgaag 214
             ||||||||||||||||||||
Sbjct: 12526 aaccatgaagttccatgaag 12545


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,999,528
Number of Sequences: 3902068
Number of extensions: 3999528
Number of successful extensions: 68379
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68276
Number of HSP's gapped (non-prelim): 103
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)