>GIDB_PORGI (Q7MV10) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited|
           division protein B)
          Length = 221

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = +1

Query: 115 PHL*RSRAQKAWNNGGRGGCLRRSVSGISRPVINNAFSICVVLHSIHIAPLR*FVEGVSL 294
           PHL   + ++    GG        ++ ISR  I+N + +  VLHS+ IA +  F  G S+
Sbjct: 23  PHLSERQREQFEQMGGLYTHWNALINVISRKDIDNLY-LHHVLHSLGIARMLNFKPGTSV 81

Query: 295 IKLGTG 312
           + LGTG
Sbjct: 82  LDLGTG 87

>PERT_RAT (P14650) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)|
          Length = 914

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -1

Query: 123 QVWCS-----SLAPMIQNLNECAGLTGSGCGDTSSCRMARG 16
           QV C+     S  P+ +++NECA LT   C  ++ C+  +G
Sbjct: 767 QVTCTQNGWDSEPPVCKDVNECADLTHPPCHSSAKCKNTKG 807

>PERT_MOUSE (P35419) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)|
          Length = 914

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = -1

Query: 123 QVWCS-----SLAPMIQNLNECAGLTGSGCGDTSSCRMARG 16
           QV C+     S  P+ +++NECA LT   C  ++ C+  +G
Sbjct: 767 QVTCTQKGWDSEPPVCKDVNECADLTHPPCHPSAQCKNTKG 807

>YJDC_MOUSE (Q8K2D3) YjeF domain-containing protein 1|
          Length = 508

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -1

Query: 294 QAHPLHESSKG--GDMYRM*DNANGKGIVYYRPRNTTHAPTQASSSPSVIPSFLGTRPSQ 121
           Q   LH++  G  G  Y+M  + NG G V  +P +++ AP        V    +   P Q
Sbjct: 75  QVGDLHQTELGPSGVGYQMSISQNGTGKVVKKPASSSSAPQSIPKRTDVKSQDVAISPQQ 134

Query: 120 VWCS 109
             CS
Sbjct: 135 QQCS 138

>PERT_CANFA (Q8HYB7) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)|
          Length = 933

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 129 PSQVWCSSL-----APMIQNLNECAGLTGSGCGDTSSCRMARG 16
           P QV CS       AP+ +++NEC   +   C  ++ CR  +G
Sbjct: 774 PEQVACSPRGGAVRAPVCRDINECEDASHPPCHGSARCRNTKG 816

>PHF1_MOUSE (Q9Z1B8) PHD finger protein 1 (PHF1 protein) (T-complex|
           testis-expressed 3) (Polycomblike 1) (mPCl1)
          Length = 559

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 204 PRNTTHAPTQASSS-PSVIPSFLGTRPSQVWCSSLAP 97
           P+++ H+ T +SSS P++ P F    P    C SL+P
Sbjct: 479 PKSSPHSVTASSSSVPALTPGFSRHSPPSPLCRSLSP 515

>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -1

Query: 195 TTHAPTQASSSPSVIPSFLGTRPSQVWCSSLAPMIQNLNECAGL 64
           TT AP Q   S +V+P   G  PS      LAP     +E  G+
Sbjct: 96  TTAAPVQVDHSAAVVPIVAGEGPSTAHREELAPPAGQPSEQPGV 139

>NADO_THEBR (P32382) NADH oxidase (EC 1.-.-.-)|
          Length = 651

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -1

Query: 216 VYYRPRNTTHAPTQASS--SPSVIP-SFLGTRPSQVWCSSLAPMIQNLNECA 70
           +++  R TT   T+     +PS +P SFLGT+P ++  + +  +IQ   + A
Sbjct: 105 IHHAGRQTTPGITEGLQPVAPSPVPCSFLGTQPRELTINEIEEIIQKFVDAA 156

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 312  TSPQFDQAHPLHESSKGGDMYRM*DNANGKGIVYYRPRNTTHAPTQASSSPSVIPSFLGT 133
            TSP +    P +  S  G  Y     A       Y P + +++PT  S SP+  PS+  T
Sbjct: 1569 TSPGYSPTSPTYSPSSPG--YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPT 1625

Query: 132  RPS 124
             PS
Sbjct: 1626 SPS 1628

>ATC9_SCHPO (O74431) Probable cation-transporting ATPase C1672.11c (EC 3.6.3.-)|
          Length = 1315

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 21/80 (26%), Positives = 31/80 (38%)
 Frame = -1

Query: 261  GDMYRM*DNANGKGIVYYRPRNTTHAPTQASSSPSVIPSFLGTRPSQVWCSSLAPMIQNL 82
            GD++R         +V Y P N  H          ++ + +  R S    + L    QNL
Sbjct: 963  GDVFRW--------LVDYAPLNVFHH--------ILLKAQIFARMSPSEKNELVSCFQNL 1006

Query: 81   NECAGLTGSGCGDTSSCRMA 22
            N C G  G G  D  + + A
Sbjct: 1007 NYCVGFCGDGANDCGALKAA 1026

>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = -1

Query: 309  SPQFDQAHPLHESSKGGDMYRM*DNANGKGIVYYRPRNTTHAPTQASSSPSVIPSFLGTR 130
            SP   Q  P ++ S  G  Y          +  Y P +T ++PT    SP+  P+     
Sbjct: 1799 SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPT----SPTYTPTARNYS 1854

Query: 129  PSQVWCSSLAP 97
            P+    S  AP
Sbjct: 1855 PTSPMYSPTAP 1865


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,243,757
Number of Sequences: 219361
Number of extensions: 1235414
Number of successful extensions: 3162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)