ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26i22 |
|---|---|
| Clone Library Name | barley_pub |
>GP175_RAT (Q791F6) Integral membrane protein GPR175 (Transmembrane domain| protein of 40 kDa regulated in adipocytes) (TPRA40) Length = 369 Score = 36.2 bits (82), Expect = 0.078 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Frame = +2 Query: 359 GTGGKWGLWILHKLVLTGVYGLIVFMHHSRWKDR--LPAKPAYYQYVCAMLALNGLSLFG 532 G GG+ W++ VY L+V + + K+R LP++ ++Y Y + LN L G Sbjct: 184 GHGGRQ-FWLVSSCFFFLVYSLVVILPKTPLKERVSLPSRRSFYVYAGILATLNLLQGLG 242 Query: 533 CFLVTCGAGFGLWLYNLTTVCYHALY 610 L+ GL + TT Y + + Sbjct: 243 SALLCANIIVGLCCVDATTFLYFSFF 268
>GP175_MOUSE (Q99MU1) Integral membrane protein GPR175 (Transmembrane domain| protein of 40 kDa regulated in adipocytes) (TPRA40) Length = 369 Score = 36.2 bits (82), Expect = 0.078 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Frame = +2 Query: 359 GTGGKWGLWILHKLVLTGVYGLIVFMHHSRWKDR--LPAKPAYYQYVCAMLALNGLSLFG 532 G GG+ W++ VY L+V + + K+R LP++ ++Y Y + LN L G Sbjct: 184 GHGGRQ-FWLVSSCFFFLVYSLVVILPKTPLKERVSLPSRRSFYVYAGILATLNLLQGLG 242 Query: 533 CFLVTCGAGFGLWLYNLTTVCYHALY 610 L+ GL + TT Y + + Sbjct: 243 SALLCANIIVGLCCVDATTFLYFSFF 268
>GP175_BRARE (Q4V8X0) Integral membrane protein GPR175| Length = 378 Score = 34.7 bits (78), Expect = 0.23 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 4/156 (2%) Frame = +2 Query: 155 VLSLFTKSGMLFLEVSLIAFLLQGNEASGYESLGRTFVISGAVVSADVLLKTIYVFGFGV 334 VL T+ +L +E+S+I L S+ R I+ + A + + F Sbjct: 129 VLWEITRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITAVLSLAYSITQGTLEIRFPD 188 Query: 335 PLFIDADQGTGGKWG--LWILHKLVLTGVYGLIVFMHHSRWKDR--LPAKPAYYQYVCAM 502 D G G W+ VY LIV + + ++R LP+K ++Y Y + Sbjct: 189 KHLSAKDFNIYGHGGRHFWLASSCFFFLVYSLIVILPKTPIRERISLPSKRSFYVYSGIL 248 Query: 503 LALNGLSLFGCFLVTCGAGFGLWLYNLTTVCYHALY 610 LN + G L+ GL ++TT Y +++ Sbjct: 249 ALLNLVQGLGSALLCADIIEGLCCVDVTTFLYFSVF 284
>GP175_HUMAN (Q86W33) Integral membrane protein GPR175| Length = 373 Score = 34.3 bits (77), Expect = 0.30 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Frame = +2 Query: 359 GTGGKWGLWILHKLVLTGVYGLIVFMHHSRWKDR--LPAKPAYYQYVCAMLALNGLSLFG 532 G GG+ W++ VY L+V + + K+R LP++ ++Y Y + LN L G Sbjct: 187 GHGGRQ-FWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNLLQGLG 245 Query: 533 CFLVTCGAGFGLWLYNLTTVCYHALY 610 L+ GL + TT Y + + Sbjct: 246 SVLLCFDIIEGLCCVDATTFLYFSFF 271
>GP175_CHICK (Q5ZII3) Integral membrane protein GPR175| Length = 364 Score = 33.1 bits (74), Expect = 0.66 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Frame = +2 Query: 359 GTGGKWGLWILHKLVLTGVYGLIVFMHHSRWKDR--LPAKPAYYQYVCAMLALNGLSLFG 532 G GG+ W+ VY +V + + KDR LP++ ++Y Y + LN + G Sbjct: 197 GHGGRH-FWLASSCFFFLVYSFVVILPKTPLKDRISLPSRKSFYVYAGILAVLNLVQGLG 255 Query: 533 CFLVTCGAGFGLWLYNLTTVCYHALY 610 L+ GL + TT Y + + Sbjct: 256 SALLCVDIIEGLCCVDATTFLYFSFF 281
>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)| Length = 2498 Score = 32.7 bits (73), Expect = 0.87 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -3 Query: 414 TPVSTNLWRIHRPHFPPVPWSASINKGTPKPNTYMVLSNTSAL----TTAPEMTKVRPKD 247 TP+ +RI PP P +ASI +G P +AL T+AP+M +PK+ Sbjct: 1870 TPLDAAQFRI----MPPTPGAASITQGIPASRYSTAADALAALVDAATSAPQMEVAKPKE 1925 Query: 246 S 244 S Sbjct: 1926 S 1926
>NORM_BACSU (O31855) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 452 Score = 31.6 bits (70), Expect = 1.9 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 12/101 (11%) Frame = +2 Query: 188 FLEVSLIAFLLQGNEASGYESLGRTFVISGAVVSA---DVLLKTIYVFG-FGVPLFIDAD 355 FL + + + S +SLG+T V +S+ + +L +++FG FG+P Sbjct: 136 FLSLGIFPLFVYTVLRSFIDSLGKTRVTMMITLSSLPINFVLNYVFIFGKFGMPALGGVG 195 Query: 356 QGTGGKWGLW--------ILHKLVLTGVYGLIVFMHHSRWK 454 G W I+HK YG+ + M+ WK Sbjct: 196 AGLASALTYWCICIISFFIIHKNAPFSEYGIFLTMYKFSWK 236
>DCMA_MOOTH (P27988) Carbon monoxide dehydrogenase/acetyl CoA synthase alpha| subunit (EC 2.3.1.169) (Acetyl CoA synthase subunit) (CODH/ACS) (ACS subunit) Length = 729 Score = 30.4 bits (67), Expect = 4.3 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +2 Query: 170 TKSGMLFLEVSLIAFLLQGNEASGYESLGRTFVISGAVVSAD 295 T SGM F +L + G + G+ +GRT+++S +SAD Sbjct: 622 TPSGMTFS--TLAGMIGGGTQTPGFMGIGRTYIVSKKFISAD 661
>SUC1_CANAL (P33181) Probable sucrose utilization protein SUC1| Length = 501 Score = 29.6 bits (65), Expect = 7.3 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = +2 Query: 107 FLQVWQCMPDRAFSWNVLSLFTKSGMLFLEVSLIAFLLQGNEASGYESLGRTFVISGAVV 286 FL + +P RAF N + K +L + LI + N+ SGYESL R F + + Sbjct: 371 FLGEIKSIPLRAFESNGPGVVFK--LLSIATVLIDSINLSNDVSGYESLQRMFDLISKLK 428 Query: 287 SADVLL 304 D+++ Sbjct: 429 KTDMII 434
>SFXN4_HUMAN (Q6P4A7) Sideroflexin-4 (Breast cancer resistance marker 1)| Length = 337 Score = 29.6 bits (65), Expect = 7.3 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = +2 Query: 185 LFLEVSLIAF-LLQGNEASGYESLGRTFVISGAVVSADVLLKTIYVFGFGVPLFIDADQG 361 +FL + AF + GN + + L R+ +++GAV S+ L +P F+ G Sbjct: 139 VFLCAYMAAFNSINGNRSYTCKPLERSLLMAGAVASSTFLGV--------IPQFVQMKYG 190 Query: 362 TGGKWGLWILHKLVLTGVYGLIVFMHHS 445 G W +L + L G+ V+M S Sbjct: 191 LTGPWIKRLLPVIFLVQASGMNVYMSRS 218
>NCOR1_XENTR (Q4KKX4) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)| Length = 2494 Score = 29.6 bits (65), Expect = 7.3 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Frame = -3 Query: 414 TPVSTNLWRIHRPHFPPVPWSASINKGTPKPNTYMVLSNTSAL----TTAPEMTKVRPKD 247 TP+ RI PP P +ASI +G P +AL +AP+M V+PK+ Sbjct: 1863 TPLDAAQLRI----MPPTPGAASITQGIPASRYSTAADALAALVDAAASAPQMEVVKPKE 1918
>NORM_OCEIH (Q8CUL5) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 447 Score = 29.6 bits (65), Expect = 7.3 Identities = 29/144 (20%), Positives = 58/144 (40%), Gaps = 4/144 (2%) Frame = +2 Query: 182 MLFLEVSLIAFLLQGNEASGYESLGRT---FVISGAVVSADVLLKTIYVFG-FGVPLFID 349 ++ L ++ L S + LG+T +I + + +L I +FG FG+P F Sbjct: 134 LITLGTGIVPLFLFHTIRSFMDGLGQTRSSMIIILISLPINAVLNYILIFGKFGIPAFGG 193 Query: 350 ADQGTGGKWGLWILHKLVLTGVYGLIVFMHHSRWKDRLPAKPAYYQYVCAMLALNGLSLF 529 G WI+ + + ++ + F + ++ LP +Y+ + GL++F Sbjct: 194 IGAGIATSLTYWIISGISIFMIHRVYPFHSYKVFQKILPPTLSYWADQLKIGLPIGLAIF 253 Query: 530 GCFLVTCGAGFGLWLYNLTTVCYH 601 + + YN T+ H Sbjct: 254 FETSIFSAVTLLMSEYNTNTIAAH 277
>Y1375_METJA (Q58770) Hypothetical protein MJ1375| Length = 415 Score = 29.3 bits (64), Expect = 9.6 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Frame = +2 Query: 164 LFTKSGMLFLEVSLIAF---LLQGNEASGYESLGRTFVISGAVVSADVLLKTIYVFGFGV 334 L+ G+ + ++IAF +LQG Y SL T+++ V + T+Y+ FG Sbjct: 113 LYFAVGLCVVASTVIAFSRGILQGLLKMKYLSL--TWIVEYTAKVILVFILTLYLGIFGS 170 Query: 335 PLFIDADQGTGGKWGLWILHK 397 L I GG +GL++++K Sbjct: 171 LLSISLAYLVGGIFGLYLIYK 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,708,035 Number of Sequences: 219361 Number of extensions: 1802217 Number of successful extensions: 5065 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5057 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
