ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26i21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY238991.1| Oryza sativa bHLH transcription factor PTF1 (PTF1) mRNA, complete cds Length = 1862 Score = 121 bits (61), Expect = 8e-25 Identities = 139/165 (84%) Strand = Plus / Plus Query: 31 aatttaattcccccagagactcttcagtgcacttcaacacctggaacttttgacctgcag 90 |||| ||||||||||| | ||||||||||| ||||||| ||||||| ||||| | | Sbjct: 379 aattcaattcccccaggggttcttcagtgcaattcaacatctggaacatttgatgcgaaa 438 Query: 91 ttggatacccctggccttctggaactacctcatgccttgtccagttcaattgaaagcaat 150 |||||||| ||||| ||| ||||| |||||||| ||||||||||||||||| |||||| Sbjct: 439 ttggatacacctggtcttgcagaactgcctcatgctttgtccagttcaattgatagcaat 498 Query: 151 ggtagtgaagtttcagcttttcttgctgatgtacaagctgtttct 195 |||||||| |||| ||||||||||||||||| || || |||||| Sbjct: 499 ggtagtgacatttctgcttttcttgctgatgtgcatgccgtttct 543
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 121 bits (61), Expect = 8e-25 Identities = 139/165 (84%) Strand = Plus / Minus Query: 31 aatttaattcccccagagactcttcagtgcacttcaacacctggaacttttgacctgcag 90 |||| ||||||||||| | ||||||||||| ||||||| ||||||| ||||| | | Sbjct: 4723961 aattcaattcccccaggggttcttcagtgcaattcaacatctggaacatttgatgcgaaa 4723902 Query: 91 ttggatacccctggccttctggaactacctcatgccttgtccagttcaattgaaagcaat 150 |||||||| ||||| ||| ||||| |||||||| ||||||||||||||||| |||||| Sbjct: 4723901 ttggatacacctggtcttgcagaactgcctcatgctttgtccagttcaattgatagcaat 4723842 Query: 151 ggtagtgaagtttcagcttttcttgctgatgtacaagctgtttct 195 |||||||| |||| ||||||||||||||||| || || |||||| Sbjct: 4723841 ggtagtgacatttctgcttttcttgctgatgtgcatgccgtttct 4723797
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 121 bits (61), Expect = 8e-25 Identities = 139/165 (84%) Strand = Plus / Minus Query: 31 aatttaattcccccagagactcttcagtgcacttcaacacctggaacttttgacctgcag 90 |||| ||||||||||| | ||||||||||| ||||||| ||||||| ||||| | | Sbjct: 86560 aattcaattcccccaggggttcttcagtgcaattcaacatctggaacatttgatgcgaaa 86501 Query: 91 ttggatacccctggccttctggaactacctcatgccttgtccagttcaattgaaagcaat 150 |||||||| ||||| ||| ||||| |||||||| ||||||||||||||||| |||||| Sbjct: 86500 ttggatacacctggtcttgcagaactgcctcatgctttgtccagttcaattgatagcaat 86441 Query: 151 ggtagtgaagtttcagcttttcttgctgatgtacaagctgtttct 195 |||||||| |||| ||||||||||||||||| || || |||||| Sbjct: 86440 ggtagtgacatttctgcttttcttgctgatgtgcatgccgtttct 86396
>dbj|AK065667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042L14, full insert sequence Length = 2200 Score = 121 bits (61), Expect = 8e-25 Identities = 139/165 (84%) Strand = Plus / Plus Query: 31 aatttaattcccccagagactcttcagtgcacttcaacacctggaacttttgacctgcag 90 |||| ||||||||||| | ||||||||||| ||||||| ||||||| ||||| | | Sbjct: 745 aattcaattcccccaggggttcttcagtgcaattcaacatctggaacatttgatgcgaaa 804 Query: 91 ttggatacccctggccttctggaactacctcatgccttgtccagttcaattgaaagcaat 150 |||||||| ||||| ||| ||||| |||||||| ||||||||||||||||| |||||| Sbjct: 805 ttggatacacctggtcttgcagaactgcctcatgctttgtccagttcaattgatagcaat 864 Query: 151 ggtagtgaagtttcagcttttcttgctgatgtacaagctgtttct 195 |||||||| |||| ||||||||||||||||| || || |||||| Sbjct: 865 ggtagtgacatttctgcttttcttgctgatgtgcatgccgtttct 909
>gb|DQ468654.1| Zea mays bHLH transcription factor PTF1 mRNA, complete cds Length = 1670 Score = 81.8 bits (41), Expect = 7e-13 Identities = 92/109 (84%) Strand = Plus / Plus Query: 87 gcagttggatacccctggccttctggaactacctcatgccttgtccagttcaattgaaag 146 ||||||| |||| ||||| ||| ||||| ||||||||||| || ||||||||||| || Sbjct: 458 gcagttgaatactcctggactttcagaactgcctcatgccttatctagttcaattgatag 517 Query: 147 caatggtagtgaagtttcagcttttcttgctgatgtacaagctgtttct 195 ||||| ||||||||||| |||||||| |||||| || | ||||||||| Sbjct: 518 taatggaagtgaagtttctgcttttctcgctgatctaaatgctgtttct 566
>emb|BX957269.5| Zebrafish DNA sequence from clone CH211-12C22 in linkage group 6, complete sequence Length = 174814 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 cctgcagttggatacccctgg 104 ||||||||||||||||||||| Sbjct: 53106 cctgcagttggatacccctgg 53126
>emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6, complete sequence Length = 209866 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 cctgcagttggatacccctgg 104 ||||||||||||||||||||| Sbjct: 178850 cctgcagttggatacccctgg 178830
>gb|AC110560.11| Mus musculus chromosome 3, clone RP23-254K1, complete sequence Length = 156067 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcttcagtgcacttcaacac 70 |||||||||||||||||||| Sbjct: 7367 tcttcagtgcacttcaacac 7348
>gb|AC126787.12| Medicago truncatula clone mth2-11c8, complete sequence Length = 124211 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ccctggccttctggaactac 118 |||||||||||||||||||| Sbjct: 45355 ccctggccttctggaactac 45374
>gb|AC158571.3| Mus musculus chromosome 3, clone RP23-117E23, complete sequence Length = 197545 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcttcagtgcacttcaacac 70 |||||||||||||||||||| Sbjct: 161601 tcttcagtgcacttcaacac 161582
>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11 Length = 349723 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 acttcaacacctggaacttt 80 |||||||||||||||||||| Sbjct: 253640 acttcaacacctggaacttt 253659
>ref|XM_684624.1| PREDICTED: Danio rerio similar to Zinc finger protein 84 (Zinc finger protein HPF2) (LOC561218), mRNA Length = 1846 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gtgaagtttcagcttttctt 174 |||||||||||||||||||| Sbjct: 1612 gtgaagtttcagcttttctt 1593
>dbj|AP006196.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-347H8, complete sequence Length = 181660 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctcatgccttgtccagttc 137 |||||||||||||||||||| Sbjct: 94507 cctcatgccttgtccagttc 94488
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 agcttttcttgctgatgtac 184 |||||||||||||||||||| Sbjct: 1519952 agcttttcttgctgatgtac 1519933
>emb|AL356438.15| Human DNA sequence from clone RP11-347H8 on chromosome 6, complete sequence Length = 91536 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctcatgccttgtccagttc 137 |||||||||||||||||||| Sbjct: 33954 cctcatgccttgtccagttc 33935
>dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 2/4 Length = 300000 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctcatgccttgtccagttc 137 |||||||||||||||||||| Sbjct: 123843 cctcatgccttgtccagttc 123824
>dbj|AB042031.1| Homo sapiens genomic DNA, chromosome 6q21, BAC clone:515A4, complete sequence Length = 194732 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cctcatgccttgtccagttc 137 |||||||||||||||||||| Sbjct: 113765 cctcatgccttgtccagttc 113746
>ref|XM_631901.1| Dictyostelium discoideum G-protein-coupled receptor family protein (DDB0230163), partial mRNA Length = 3285 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 ttcaacacctggaactttt 81 ||||||||||||||||||| Sbjct: 2748 ttcaacacctggaactttt 2766
>ref|XM_456988.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B00473g) partial mRNA Length = 1098 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 13 aatgtctgtctgcaaaataattt 35 ||||||||||| ||||||||||| Sbjct: 559 aatgtctgtctacaaaataattt 537
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 gccttgtccagttcaattg 142 ||||||||||||||||||| Sbjct: 31114016 gccttgtccagttcaattg 31114034
>gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complete sequence Length = 177050 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 175 gctgatgtacaagctgttt 193 ||||||||||||||||||| Sbjct: 31224 gctgatgtacaagctgttt 31242
>emb|AL645924.13| Human DNA sequence from clone RP11-503N18 on chromosome 4, complete sequence Length = 168683 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 167 cttttcttgctgatgtaca 185 ||||||||||||||||||| Sbjct: 139235 cttttcttgctgatgtaca 139217
>emb|AL669984.1| Human DNA sequence from clone RP11-775I22 on chromosome 6 Contains part of the LAMA2 gene for laminin, alpha 2 (merosin, congenital muscular dystrophy) (LAMM) and a bone morphogenetic protein receptor type IA (BMPR1B) pseudogene, complete sequence Length = 93893 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 tctgcaaaataatttaatt 39 ||||||||||||||||||| Sbjct: 13363 tctgcaaaataatttaatt 13381
>emb|AL356782.14| Human DNA sequence from clone RP11-47D15 on chromosome 6 Contains the 5' end of transforming protein P21A (K-RAS) (C-K-RAS) pseudogene, complete sequence Length = 128386 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 159 agtttcagcttttcttgct 177 ||||||||||||||||||| Sbjct: 73749 agtttcagcttttcttgct 73767
>emb|AL356754.18| Human DNA sequence from clone RP11-11C5 on chromosome 13 Contains a 60S ribosomal protein L21 (RPL21) pseudogene and the 3' end of a novel gene, complete sequence Length = 169888 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ttttgacctgcagttggat 96 ||||||||||||||||||| Sbjct: 41188 ttttgacctgcagttggat 41206
>emb|AL137019.6| Human DNA sequence from clone RP11-143P10 on chromosome 9q31.3-33.1, complete sequence Length = 181542 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 158 aagtttcagcttttcttgc 176 ||||||||||||||||||| Sbjct: 96973 aagtttcagcttttcttgc 96991
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 13 aatgtctgtctgcaaaataattt 35 ||||||||||| ||||||||||| Sbjct: 31343 aatgtctgtctacaaaataattt 31365
>gb|AC106865.4| Homo sapiens BAC clone RP11-153M7 from 4, complete sequence Length = 152118 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 177 tgatgtacaagctgtttct 195 ||||||||||||||||||| Sbjct: 20917 tgatgtacaagctgtttct 20935
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 gccttgtccagttcaattg 142 ||||||||||||||||||| Sbjct: 34657 gccttgtccagttcaattg 34675
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence Length = 115310 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 156 tgaagtttcagcttttctt 174 ||||||||||||||||||| Sbjct: 30023 tgaagtttcagcttttctt 30005
>gb|AC006580.4| Arabidopsis thaliana chromosome 2 clone F23E6 map m551, complete sequence Length = 34842 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 156 tgaagtttcagcttttctt 174 ||||||||||||||||||| Sbjct: 33423 tgaagtttcagcttttctt 33405
>gb|AF275348.2| Cercopithecine herpesvirus 7, complete genome Length = 124138 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 ataatttaattcccccaga 47 ||||||||||||||||||| Sbjct: 45108 ataatttaattcccccaga 45090
>gb|AC079614.7| Homo sapiens BAC clone RP11-424I4 from 2, complete sequence Length = 131215 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 159 agtttcagcttttcttgct 177 ||||||||||||||||||| Sbjct: 9991 agtttcagcttttcttgct 9973
>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome Length = 859006 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 tggccttctggaactacct 120 ||||||||||||||||||| Sbjct: 45531 tggccttctggaactacct 45513
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 168 ttttcttgctgatgtacaa 186 ||||||||||||||||||| Sbjct: 1750573 ttttcttgctgatgtacaa 1750591
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 gccttgtccagttcaattg 142 ||||||||||||||||||| Sbjct: 31204539 gccttgtccagttcaattg 31204557
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 133 agttcaattgaaagcaatggtag 155 ||||||||||||||| ||||||| Sbjct: 1396251 agttcaattgaaagccatggtag 1396229
>gb|AC016912.7| Homo sapiens BAC clone RP11-480A6 from 2, complete sequence Length = 143996 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 161 tttcagcttttcttgctga 179 ||||||||||||||||||| Sbjct: 109980 tttcagcttttcttgctga 109962
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 102 tggccttctggaactacctcatg 124 ||||||||||||| ||||||||| Sbjct: 1816036 tggccttctggaagtacctcatg 1816014
>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete sequence Length = 189998 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tgccttgtccagttcaatt 141 ||||||||||||||||||| Sbjct: 188161 tgccttgtccagttcaatt 188179
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 102 tggccttctggaactacctcatg 124 ||||||||||||| ||||||||| Sbjct: 1492301 tggccttctggaagtacctcatg 1492279
>emb|Z54336.1|HSL25G12 Human DNA sequence from clone LA04NC01-25G12 on chromosome 4, complete sequence Length = 37153 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 167 cttttcttgctgatgtaca 185 ||||||||||||||||||| Sbjct: 36956 cttttcttgctgatgtaca 36938
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 catgccttgtccagttcaa 139 ||||||||||||||||||| Sbjct: 1964428 catgccttgtccagttcaa 1964410
>emb|AL773549.5| Mouse DNA sequence from clone RP23-183A1 on chromosome 2, complete sequence Length = 188476 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 123 tgccttgtccagttcaatt 141 ||||||||||||||||||| Sbjct: 163 tgccttgtccagttcaatt 181 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,152,053 Number of Sequences: 3902068 Number of extensions: 2152053 Number of successful extensions: 172471 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 172137 Number of HSP's gapped (non-prelim): 330 length of query: 195 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 173 effective length of database: 17,147,199,772 effective search space: 2966465560556 effective search space used: 2966465560556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
