ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26h14 |
|---|---|
| Clone Library Name | barley_pub |
>CF106_BRARE (Q5BL31) Protein C6orf106 homolog| Length = 283 Score = 82.4 bits (202), Expect = 1e-15 Identities = 41/109 (37%), Positives = 60/109 (55%) Frame = +1 Query: 187 FILDVTVLDGTLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIPLN 366 F+ DVT+ +G + P +PFTK WR+ N G+ WP G L +VGGDQF V + Sbjct: 77 FVEDVTIGEGESVPPDTPFTKTWRIQNTGTESWPPGVCLKYVGGDQFGHVNMV----MVR 132 Query: 367 GFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVED 513 + DV+V +PA PG Y WR+ + +G +G +WV + VE+ Sbjct: 133 SLDPQEISDVSVQMRSPAVPGMYQGQWRMCTATGLFYGDVIWVILSVEE 181
>CF106_HUMAN (Q9H6K1) Protein C6orf106| Length = 298 Score = 77.0 bits (188), Expect = 5e-14 Identities = 38/108 (35%), Positives = 58/108 (53%) Frame = +1 Query: 187 FILDVTVLDGTLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIPLN 366 F+ DVT+ +G + P + F K WR+ N+G+ WP G L +VGGDQF V + Sbjct: 77 FVEDVTIGEGESIPPDTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMV----MVR 132 Query: 367 GFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 510 + DV+V +P+R G Y WR+ + +G +G +WV + VE Sbjct: 133 SLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVE 180
>CF106_CHICK (Q5F3N9) Protein C6orf106 homolog| Length = 291 Score = 77.0 bits (188), Expect = 5e-14 Identities = 38/108 (35%), Positives = 58/108 (53%) Frame = +1 Query: 187 FILDVTVLDGTLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIPLN 366 F+ DVT+ +G + P + FTK WR+ N G+ +WP G L +VGGDQF V + Sbjct: 77 FVEDVTIGEGESIPPDTQFTKTWRIQNTGTEVWPPGVCLKYVGGDQFGHVNMV----MVR 132 Query: 367 GFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 510 + DV+V +P+ G Y WR+ + +G +G +WV + VE Sbjct: 133 SLEPQEIADVSVQMCSPSTAGMYQGQWRMCTATGLYYGDVIWVILSVE 180
>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) (1A1-3B) Length = 966 Score = 72.8 bits (177), Expect = 9e-13 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 22/158 (13%) Frame = +1 Query: 103 KLSRDLNLCRKIHSRVSMKSKREKLESRF----------------------ILDVTVLDG 216 KL R ++L IH S KS + ES +D + DG Sbjct: 324 KLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLPLQPCTSVMPMLSAAFVDENLPDG 383 Query: 217 TLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIPLNGFPVDQEMDV 396 T + P + F K WRM N G++ W T+L ++ G+ L ++ ++ + V Sbjct: 384 THLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGN-LTLASTEKKDVLVPCLKAGHVGVV 442 Query: 397 AVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 510 +V+F+APA G Y S+WRL S GQ+FG RVW I V+ Sbjct: 443 SVEFIAPALEGTYTSHWRL-SHKGQQFGPRVWCSIIVD 479
>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 894 Score = 71.6 bits (174), Expect = 2e-12 Identities = 40/110 (36%), Positives = 61/110 (55%) Frame = +1 Query: 181 SRFILDVTVLDGTLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIP 360 S +D + DGT + P + F K WRM N G++ W T+L ++ G+ L ++ ++ Sbjct: 302 SAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGN-LTLASTEKKDVL 360 Query: 361 LNGFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 510 + V+V+F+APA G Y S+WRL S GQ+FG RVW I V+ Sbjct: 361 VPCLKAGHVGVVSVEFIAPALEGTYTSHWRL-SHKGQQFGPRVWCSIIVD 409
>CF106_MOUSE (Q3TT38) Protein C6orf106 homolog| Length = 291 Score = 71.2 bits (173), Expect = 3e-12 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 6/157 (3%) Frame = +1 Query: 187 FILDVTVLDGTLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIPLN 366 F+ DVT+ +G + P + F K WR+ N+G+ WP G L +VGGDQF V + Sbjct: 77 FVEDVTIGEGESIPPDTQFIKTWRIQNSGAEAWPTGVCLKYVGGDQFGHVNMV----MVR 132 Query: 367 GFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVEDPSFVSDNKTAA 546 + DV+V + +R G Y WR+ + +G + +WV + VE + + + Sbjct: 133 SLEPQEIADVSVQMCSLSRAGMYQGQWRMCTDTGLYYEDVIWVILSVEVGGLLGVTQQLS 192 Query: 547 ---VNLNQPQESNIT---NTSSLPQESDITNASNLID 639 N S + N + PQ++ ++ +NL D Sbjct: 193 SFETEFNTQPHSKVEGNFNPFASPQKNRQSDENNLTD 229
>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) Length = 988 Score = 70.9 bits (172), Expect = 3e-12 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 22/158 (13%) Frame = +1 Query: 103 KLSRDLNLCRKIHSRVSMKSKREKLESRF----------------------ILDVTVLDG 216 KL R ++L IH S KS + ES +D + DG Sbjct: 325 KLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLPLQPCAPVMPTLSAAFVDENLPDG 384 Query: 217 TLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIPLNGFPVDQEMDV 396 T + P + F K WRM N G++ W T+L ++ G+ L ++ ++ + V Sbjct: 385 THLQPGTKFIKHWRMKNTGNVKWNTDTKLKFMWGN-LTLASTEKKDVLVPCLKAGHVGVV 443 Query: 397 AVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 510 +V+F+AP G Y S+WRL S GQ+FG RVW I V+ Sbjct: 444 SVEFIAPTLEGTYTSHWRL-SHKGQQFGPRVWCSIIVD 480
>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 983 Score = 68.6 bits (166), Expect = 2e-11 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 22/158 (13%) Frame = +1 Query: 103 KLSRDLNLCRKIHSRVSMKSKREKLESRF----------------------ILDVTVLDG 216 KL R ++L IH S KS + ES +D + DG Sbjct: 326 KLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLPLQPCAPVMPTLSAAFVDENLPDG 385 Query: 217 TLMSPSSPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTSVPLEIPLNGFPVDQEMDV 396 T + P + F K WRM N G++ W T+L ++ G+ L ++ ++ + V Sbjct: 386 THLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGN-LTLASTEKKDVLVPCLKAGHIGVV 444 Query: 397 AVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 510 +V+F+AP G Y +WRL S GQ+FG RVW I V+ Sbjct: 445 SVEFIAPTLEGTYTLHWRL-SHKGQQFGPRVWCSIIVD 481
>ITSN1_XENLA (O42287) Intersectin-1| Length = 1270 Score = 34.7 bits (78), Expect = 0.26 Identities = 29/93 (31%), Positives = 41/93 (44%) Frame = +1 Query: 367 GFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVEDPSFVSDNKTAA 546 G ++ ++ A F PA P + W + S S K+ Q F S +KT + Sbjct: 190 GSQINTKLQKAQSFDVPAPP--LVVEWAVPSSSRLKYRQL-----------FNSQDKTMS 236 Query: 547 VNLNQPQESNITNTSSLPQESDITNASNLIDVN 645 NL PQ I SSLPQ S + NL D++ Sbjct: 237 GNLTGPQARTILMQSSLPQ-SQLATIWNLSDID 268
>PCDG3_PANTR (Q5DRB7) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 33.1 bits (74), Expect = 0.76 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Frame = +1 Query: 355 IPLNGFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQ-------KFGQRVWVHIQVE- 510 + +N D+ + V ++ PG+ + L S SG+ + ++ I++E Sbjct: 262 LTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEA 321 Query: 511 --DPSFVSDNKTAA----VNLNQPQESNITNTSSLPQESDITNASNLIDVN 645 P +S K VN N P+ + + TSS+P+E + LIDV+ Sbjct: 322 QDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVH 372
>PCDG3_HUMAN (Q9Y5H0) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 33.1 bits (74), Expect = 0.76 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Frame = +1 Query: 355 IPLNGFPVDQEMDVAVDFVAPARPGRYISYWRLASPSGQ-------KFGQRVWVHIQVE- 510 + +N D+ + V ++ PG+ + L S SG+ + ++ I++E Sbjct: 262 LTVNATDPDEGFNAQVSYILDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEA 321 Query: 511 --DPSFVSDNKTAA----VNLNQPQESNITNTSSLPQESDITNASNLIDVN 645 P +S K VN N P+ + + TSS+P+E + LIDV+ Sbjct: 322 QDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVPEEGTVGREIALIDVH 372
>KC47_ORYSA (P29620) CDC2+/CDC28-related protein kinase R2 (EC 2.7.11.22)| Length = 424 Score = 31.2 bits (69), Expect = 2.9 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 558 IQVHSSCLVVTHKRWIFHLDMNPNSL 481 IQ+ L HK+W+ H DM PN+L Sbjct: 122 IQMMLKGLAFCHKKWVLHRDMKPNNL 147
>BRO_DROME (Q24039) Protein brother| Length = 213 Score = 30.0 bits (66), Expect = 6.4 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +1 Query: 34 DTCFRRMG--SEVEYTRIDKPILPHKLSRDLNLCRKIHSRVSMKSKREKLESRF 189 D FRR+ SEV YT + + + R +N CRK ++ +SM + L+ F Sbjct: 51 DELFRRLSRESEVRYTGYRERAMEERRMRFVNDCRKGYAEISMVASGTNLQLYF 104
>LY75_MESAU (Q920P9) Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen)| Length = 1722 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/55 (25%), Positives = 30/55 (54%) Frame = +1 Query: 121 NLCRKIHSRVSMKSKREKLESRFILDVTVLDGTLMSPSSPFTKIWRMHNNGSIMW 285 +LC+K+HS+ + S R + E+ F+++ + + S + + + N S+MW Sbjct: 1275 SLCQKLHSKAQILSIRNEEENNFVVEQLLYFNYIAS----WVMLGVTYENNSLMW 1325
>RAD52_DEBHA (Q6BJ51) DNA repair and recombination protein RAD52| Length = 573 Score = 29.6 bits (65), Expect = 8.3 Identities = 11/32 (34%), Positives = 22/32 (68%) Frame = +1 Query: 535 KTAAVNLNQPQESNITNTSSLPQESDITNASN 630 +T VN+++ E+N NT+++P+ +D A+N Sbjct: 224 QTVGVNIHESAENNTDNTNNIPKGNDDNGATN 255
>TALAN_HUMAN (Q70YC4) Talanin| Length = 216 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +3 Query: 213 WHTYVSFKPVH*DLAHAQQWVYHVAPGNTANLGRWRSICTADLCPTRDSIEWISGGSRD 389 W +++F+P+H Q W RW+S ++DL T + W +G +RD Sbjct: 57 WKDHLAFQPLHPAERKTQVW-------------RWQSGNSSDLETTSSASPWPTGSNRD 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,604,618 Number of Sequences: 219361 Number of extensions: 2137830 Number of successful extensions: 5338 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5322 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
