ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26h13 |
|---|---|
| Clone Library Name | barley_pub |
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 35.0 bits (79), Expect = 0.11 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Frame = +1 Query: 235 QGHEVEHQHQGRGGLPRLRHREQ-----GHWPGHQ------ALPRPVPPCASGAVQPGLP 381 +GH+ +HQHQ P HR+Q GH HQ A PR S + Sbjct: 176 RGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPRGSNQGHSSSRHQADS 235 Query: 382 GRVGAVDGEQGRGQ 423 RV A G GRGQ Sbjct: 236 PRVSARSGSGGRGQ 249
>ACSA_DROME (Q9VP61) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) Length = 670 Score = 32.7 bits (73), Expect = 0.55 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +2 Query: 311 GQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 415 G +++ + SH R+ P PD ++E + WT+ RD Sbjct: 221 GHSVEKCIVVSHLKRVTPCQPDHVEEEIPWTDDRD 255
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 32.3 bits (72), Expect = 0.72 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = +1 Query: 262 QGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 414 QG GG + G+ PG Q L P A+ A PG G G G+QG Sbjct: 218 QGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQG 268
>SYK_HAEDU (Q7VLU5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 32.0 bits (71), Expect = 0.94 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Frame = +2 Query: 260 IKDEEGYPAFAIVNKATGQAIKHSLGQ-----SHPVRLVPY------NPDFLDESVLWTE 406 I+ ++ + A+VN + +H L Q +HP + P NP+ D L+ Sbjct: 354 IEVQKSWGLGAVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIG 413 Query: 407 SRDVGNGFRCVRMVNNIYLNFDA 475 R++GNGF + + FDA Sbjct: 414 GREIGNGFSELNDAEDQAARFDA 436
>FOXA2_BRARE (Q07342) Forkhead box protein A2 (Axial protein)| Length = 409 Score = 31.6 bits (70), Expect = 1.2 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Frame = +2 Query: 65 YGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYA-MSVRNGKVVLAPAN--PKDDYQHWI 235 YG S +N R P+ + Y A P Y+ +S+ + +P+ + WI Sbjct: 129 YGQSNIN-------RSRDPKTYRRSYTHAKPPYSYISLITMAIQQSPSKMLTLSEIYQWI 181 Query: 236 KDMRWSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 415 D+ +P + + +I+HSL + VP +PD + WT D Sbjct: 182 MDL-----------FPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPD 230 Query: 416 VGNGF 430 GN F Sbjct: 231 SGNMF 235
>ELN_RAT (Q99372) Elastin precursor (Tropoelastin)| Length = 870 Score = 31.2 bits (69), Expect = 1.6 Identities = 22/50 (44%), Positives = 22/50 (44%) Frame = +1 Query: 265 GRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 414 G GG L G PG ALP VP GAV LPG V V G G Sbjct: 490 GAGGAGTLGGLVPGAVPG--ALPGAVPGALPGAVPGALPGAVPGVPGTGG 537
>HNF3B_ORYLA (O42097) Hepatocyte nuclear factor 3-beta (HNF-3B) (Me-HNF3B)| (Forkhead box protein A2) Length = 415 Score = 30.8 bits (68), Expect = 2.1 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Frame = +2 Query: 65 YGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYA-MSVRNGKVVLAPANPKD--DYQHWI 235 YG S +N R P+ + Y A P Y+ +S+ + +P+ + WI Sbjct: 128 YGQSNIN-------RSRDPKTYRRSYTHAKPPYSYISLITMAIQQSPSKMLTLAEIYQWI 180 Query: 236 KDMRWSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 415 D+ +P + + +I+HSL + VP +PD + WT D Sbjct: 181 MDL-----------FPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPD 229 Query: 416 VGNGF 430 GN F Sbjct: 230 SGNMF 234
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -3 Query: 413 PCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 312 P PS P PGSPG + P +G G WPG Sbjct: 370 PQGPSGPPGVPGSPGSSRPGLRGAPG-----WPG 398
>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2| Length = 916 Score = 30.8 bits (68), Expect = 2.1 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = -3 Query: 428 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 312 S PRP AP RPGSP AP GG +G PG Sbjct: 195 SNIPRP-----APPRPGSPRIGAPRPGGGQRQGGGGRPG 228
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 428 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 330 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -3 Query: 428 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 330 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>FRAT1_MOUSE (P70339) Proto-oncogene FRAT1 (Frequently rearranged in advanced| T-cell lymphomas) (Frat-1) Length = 274 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +1 Query: 55 PGAVRHVAGERRRQLRRSAD---AAAAYGEDLLPRQPQL 162 PGAVR V GER R RSA A + G LP+QP L Sbjct: 104 PGAVRCVLGERGRVRGRSAPYCVAEISPGASALPQQPGL 142
>SPR2F_MOUSE (O70557) Small proline-rich protein 2F| Length = 76 Score = 30.0 bits (66), Expect = 3.6 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -3 Query: 425 RCPRPCSPSTAPTRPGSPGCTAP 357 +CP PCSPS P P C P Sbjct: 22 KCPEPCSPSVCPEPCPPPKCPEP 44
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 30.0 bits (66), Expect = 3.6 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = +1 Query: 235 QGHEVEHQHQGRGGLPRL-----RHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAV 399 QG E +Q + G P +++ +G QA P P+PP +G+++ G G+ G V Sbjct: 357 QGQEGGYQQRPPGQQPNQTQSQGQYQSRGPPQQQQAAPLPLPPQPAGSIKRGTIGKPGQV 416
>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic| region Length = 492 Score = 30.0 bits (66), Expect = 3.6 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +2 Query: 53 PPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANPKDDYQH 229 PP+PYG+ +N N PM QP + + N N+ + +++L + YQH Sbjct: 430 PPLPYGVPPMNQMQN----PMYIQPPPQAPPQGNGNFQQVMELHQILLQQQQQQHQYQH 484
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 235 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 408 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 266 RGFDGRNGEKGETGAPGLKG--ENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGND 323 Query: 409 QGRG 420 RG Sbjct: 324 GARG 327
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -3 Query: 419 PRPCSPSTAPTRPGSPGCT-APDAQGGTGRGSA 324 P P P +P +PG PG AP A G G+G++ Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGAS 136
>SOX12_HUMAN (O15370) SOX-12 protein (SOX-22 protein)| Length = 315 Score = 30.0 bits (66), Expect = 3.6 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 16/154 (10%) Frame = +1 Query: 1 IRHEGARLVRDG----------DAGVRAPGAVRHVAGERRRQLRRSADAAAAYGEDLLPR 150 ++ GAR RDG + G R PG + +G +R + + ++ + Sbjct: 2 VQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQ 61 Query: 151 QPQLRH--VXXXXXXXXXXXXXXXXLPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQ 324 P + + + +P + + + +H P ++R + G Sbjct: 62 WPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHM--ADYPDYKYRPRKKSKGAP 119 Query: 325 ALPRPVPPCASGAVQPGLPGR----VGAVDGEQG 414 A RP PP SG PGR GA + +G Sbjct: 120 AKARPRPPGGSGGGSGSSPGRSCLAAGAAEQREG 153
>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)| (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary mucin) (PUM) Length = 1255 Score = 25.0 bits (53), Expect(2) = 4.4 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 10/36 (27%) Frame = -3 Query: 416 RPCSPSTAP----------TRPGSPGCTAPDAQGGT 339 RP STAP TRP +PG TAP A G T Sbjct: 905 RPAPGSTAPPAHGVTSAPDTRP-APGSTAPPAHGVT 939 Score = 23.1 bits (48), Expect(2) = 4.4 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 352 HRVGLAEGVLDGLASGLVHDG 290 H V A G G AS LVH+G Sbjct: 956 HNVTSASGSASGSASTLVHNG 976
>CRU1_BRANA (P33523) Cruciferin BnC1 precursor (11S globulin) (12S storage| protein) [Contains: Cruciferin BnC1 alpha subunit; Cruciferin BnC1 beta subunit] Length = 490 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = +1 Query: 316 GHQALPRPVPPCA-----SGAVQP--GLPGRVGAVDGEQGRGQRLQVRAHGEQ 453 G + R VP CA S QP G P G G+QG+GQ Q + G+Q Sbjct: 95 GEGLMGRVVPGCAETFQDSSVFQPSGGSPSGEGQGQGQQGQGQGHQGQGQGQQ 147
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 235 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 408 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 409 QGRG 420 RG Sbjct: 323 GARG 326
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = -3 Query: 446 PCART*SRCPRPCSPSTAPTRPGSPGCTAPDAQGGT 339 P T S PRP PS P+ S G T P GT Sbjct: 473 PWTSTTSEVPRPPEPSQGPSTTSSGGGTGPHPPSGT 508
>OST6_HUMAN (Q96QI5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC| 2.8.2.23) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 6) (Heparan sulfate 3-O-sulfotransferase 6) (h3-OST-6) Length = 342 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 446 PCART*SRCPRPCSPSTAPTRPGSPGCTAPDAQG 345 P AR + P P PS++ RPG+PG G Sbjct: 53 PAARAPAPAPAPSEPSSSVHRPGAPGLPLASGPG 86
>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 241 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Frame = +1 Query: 253 HQHQGRGGLPRLRHREQGHWPGH-------QALPRPVPPCASGAVQPGLPGRVGA 396 +Q G GG P + G +PGH QA P P P + PG PG GA Sbjct: 27 NQPAGPGGYPGAAY--PGAYPGHAPGAYPGQAPPGPYPGPGAHGAYPGQPGGPGA 79
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 235 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 408 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 110 RGFDGRNGEKGEPGAPGLKG--ENGVPGEDGAPGPMGPRGAPGERGRPGLPGAAGARGND 167 Query: 409 QGRG 420 RG Sbjct: 168 GARG 171
>VSR6_ARATH (Q9FYH7) Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal| growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) Length = 622 Score = 29.6 bits (65), Expect = 4.7 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 14/164 (8%) Frame = +2 Query: 2 FGTRELGSYGMATPGYAPPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRN 181 FG G Y + + YA YG + +P P+PT+ I R +A+ V N Sbjct: 53 FGVPNYGGYMIGSVVYAGQGAYGCDSFDKTF----KPKFPRPTILIIDRGECYFALKVWN 108 Query: 182 GKVV-LAPANPKDDYQHWIKDMRWSTSIKDEEGY------PAFAIVNKATGQAIKHSLGQ 340 G+ +A D+ + M K+ + + P+ A+++ + +K +L + Sbjct: 109 GQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLNIPS-ALIDFSFANTLKQALKK 167 Query: 341 SHPVRL-------VPYNPDFLDESVLWTESRDVGNGFRCVRMVN 451 V L +P+ PD E LWT + D G RC +N Sbjct: 168 GEEVVLKIDWSESLPH-PDERVEYELWTNTND-ECGARCDEQMN 209
>HLOX2_HELRO (Q01622) Homeobox protein LOX2 (Fragment)| Length = 429 Score = 29.6 bits (65), Expect = 4.7 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = +2 Query: 23 SYGMATPGYAPPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAP 202 S+G A G+ YG+ + G RP P T C ++ S++ GK+ AP Sbjct: 144 SHGKAFGGHFASSRYGIDDDVISNRTGSRPSSPASTTP-SCENFSPHSPSMKGGKMGSAP 202 Query: 203 ANP 211 + P Sbjct: 203 SYP 205
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +1 Query: 235 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 408 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 409 QGRG 420 RG Sbjct: 323 GARG 326
>CBK1_ASHGO (Q754N7) Serine/threonine-protein kinase CBK1 (EC 2.7.11.1)| Length = 719 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 17 LGSYGMATPGYAPPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNY 163 LGS G +P + PP+ GM Q ++ PP IY + N ++ Sbjct: 82 LGSVGAPSPAFQPPMVVGMQQQPIN-------TPPPTATSIYSQNNNSF 123
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.6 bits (65), Expect = 4.7 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 16/78 (20%) Frame = +1 Query: 262 QGRGGLPRLRHREQGHWPGHQALPR----------PVPPCASGAVQPGLPG-----RVGA 396 QG GLP + Q PG P P PP G +PG PG +G Sbjct: 307 QGPPGLPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGG 366 Query: 397 VDGEQG-RGQRLQVRAHG 447 V G G RG++ V A G Sbjct: 367 VPGALGPRGEKGPVGAPG 384
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 24.6 bits (52), Expect(2) = 5.5 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +2 Query: 32 MATPGYAPPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANP 211 M PG+ PP P G + G+P P P + +P ++ + GK L P NP Sbjct: 620 MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGP------KGDPGQTIT-QPGKPGL-PGNP 671 Query: 212 KDD 220 D Sbjct: 672 GRD 674 Score = 23.1 bits (48), Expect(2) = 5.5 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 313 PGHQALPR-PVPPCASGAVQPGLPGRVGAVDGEQG 414 PG + P P PP A PG PGR+G ++G G Sbjct: 712 PGPKGFPGIPGPPGA-----PGTPGRIG-LEGPPG 740
>RL21_ARCFU (O28743) 50S ribosomal protein L21e| Length = 97 Score = 29.3 bits (64), Expect = 6.1 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +1 Query: 343 PPCASGAVQPGLPGRVGAVDGEQGRGQRLQVRAHGE 450 P G P GR G V G++GR +QVR G+ Sbjct: 46 PASQKGMPHPRFQGRTGVVIGQRGRAYLVQVRDGGK 81
>CDX2_MESAU (Q04649) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| Length = 313 Score = 29.3 bits (64), Expect = 6.1 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 5/50 (10%) Frame = +1 Query: 292 HREQGHWPGHQALPRPVPPCASGAVQ---PGLPG--RVGAVDGEQGRGQR 426 H H P H P P CASG +Q PG PG GA + GQR Sbjct: 115 HHHPHHHPHH---PAAAPSCASGLLQTLNPGPPGPAATGAAEQLSPSGQR 161
>CDX2_HUMAN (Q99626) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| (CDX-3) Length = 313 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%) Frame = +1 Query: 292 HREQGHWPGHQALPRPVPPCASGAVQ---PGLPGRVGAVDGEQ 411 H H P H P P CASG +Q PG PG EQ Sbjct: 116 HHHPHHHPHH---PAAAPSCASGLLQTLNPGPPGPAATAAAEQ 155
>SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1| Length = 1230 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = -3 Query: 428 SRCPRPCSPS-TAPTRPGSPGCTAP 357 S CP P P ++ T PGSP CT P Sbjct: 1016 SDCPSPREPRPSSGTEPGSPACTRP 1040
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +1 Query: 313 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 426 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 205 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 244
>SYV_NOCFA (Q5Z048) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 893 Score = 29.3 bits (64), Expect = 6.1 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = +2 Query: 170 SVRNGKVVLAPANPKDDYQHWIKDMR-WSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSH 346 +VRNG+VV+ PA+ + + W+ +M W+ S + G+ I G+ + G++ Sbjct: 388 AVRNGQVVIHPASQEPRWFEWVDNMHDWTISRQLWWGH-RIPIWYGPDGEVVCLGPGETP 446 Query: 347 PVRLVPYNPDFLD---ESVLW 400 P V +PD LD S LW Sbjct: 447 PEGWV-QDPDVLDTWFSSGLW 466
>IGHG3_HUMAN (P01860) Ig gamma-3 chain C region (Heavy chain disease protein)| (HDC) Length = 290 Score = 29.3 bits (64), Expect = 6.1 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -3 Query: 422 CPRPCSPSTAPTRPGSPGCTAPDAQGG 342 CPR P + T P P C AP+ GG Sbjct: 54 CPRCPEPKSCDTPPPCPRCPAPELLGG 80
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +1 Query: 313 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 426 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +1 Query: 313 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 426 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 668
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +1 Query: 313 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 426 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 640 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 679
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 313 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 426 PG Q LP P PP +G + G+PG GA RG+R Sbjct: 629 PGFQGLPGPAGPPGEAGKPGEQGVPGNAGAPGPAGARGER 668
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +1 Query: 313 PGHQALPRPVPPCASGAV-QPGLPGRVGAVDGEQG 414 PGH LP PV P G V PG PG+ G +DG G Sbjct: 387 PGHDGLPGPVGP--RGPVGAPGAPGQPG-IDGMPG 418
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -3 Query: 404 PSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 312 P P PG PG AP A G G+ PG Sbjct: 304 PPAPPAAPGGPGAPAPGAPGAPAPGAPAAPG 334
>SYV_HAEDU (Q7VN93) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 961 Score = 29.3 bits (64), Expect = 6.1 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 18/124 (14%) Frame = +2 Query: 92 GNCGGRPMPPQPTVKIYCRANPNYAMS---VRNGKVVLAPANPKDDYQHWIKDMR-WSTS 259 G+ GG P+ P T + Y P ++ V NG++ P ++ Y W++D++ W S Sbjct: 373 GDRGGVPIEPMLTDQWYVSVKPLAEVATKAVENGEIQFVPKQYENLYFSWMRDIQDWCIS 432 Query: 260 IK-----------DEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLD---ESVL 397 + DE G + IKH+L P + + D LD S L Sbjct: 433 RQLWWGHRIPAWYDESG--NVYVARTEAEVRIKHNLPLDLP---LTQDEDVLDTWFSSGL 487 Query: 398 WTES 409 WT S Sbjct: 488 WTFS 491
>Y4762_ARATH (Q8RY73) Protein At4g17620, chloroplast precursor| Length = 544 Score = 29.3 bits (64), Expect = 6.1 Identities = 26/71 (36%), Positives = 30/71 (42%) Frame = +1 Query: 220 LPALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAV 399 +P L G ++ H GRGG+ R R PG LPRP P PGR G Sbjct: 135 IPVLPAGWSNDN-HGGRGGMGRGRWSNGRGGPG--LLPRPGP----------YPGRGGNR 181 Query: 400 DGEQGRGQRLQ 432 G GR Q Q Sbjct: 182 GGFGGRYQNYQ 192
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.3 bits (64), Expect = 6.1 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%) Frame = +1 Query: 313 PGHQALPRPV-PPCASGAV-QPGLPGRVGAVDGEQGRGQR 426 PG Q LP P PP +G + G+PG +GA RG+R Sbjct: 636 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGER 675
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%) Frame = +1 Query: 307 HWPGHQALPRPVPPCASGAVQPGLPGRV---GAVDGE 408 H PG A PRP P S +QP P V G + GE Sbjct: 356 HRPGRPAQPRPPSPKTSALLQPKAPTGVDSTGVIAGE 392
>M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 859 Score = 28.9 bits (63), Expect = 7.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 419 PRPCSPSTAPTRPGSPGCTAPDAQGG 342 P P T P+ +PG T+PD+ GG Sbjct: 635 PPPARGDTPPSEGSAPGSTSPDSPGG 660
>SYV_PARUW (Q6MAM1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 949 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +2 Query: 173 VRNGKVVLAPANPKDDYQHWIKDMR-WSTS 259 V+NG+V L P++ + Y HWI ++R W S Sbjct: 376 VQNGQVKLIPSHWESTYFHWIDNLRDWCIS 405
>SYK_PASMU (P57822) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 501 Score = 28.9 bits (63), Expect = 7.9 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Frame = +2 Query: 260 IKDEEGYPAFAIVNKATGQAIKHSLGQ-----SHPVRLVPY------NPDFLDESVLWTE 406 I+ ++ + ++VN + +H L Q +HP + P NP+ D L+ Sbjct: 357 IEVQKSWGLGSLVNVIFEEVAEHHLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIG 416 Query: 407 SRDVGNGFRCVRMVNNIYLNFDA 475 R++GNGF + + FDA Sbjct: 417 GREIGNGFSELNDAEDQNERFDA 439
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 28.9 bits (63), Expect = 7.9 Identities = 28/74 (37%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Frame = +1 Query: 265 GRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ-------PGLPGRVGAVDGEQG--- 414 G GL R P AL PP SG PGLPGR G V GE G Sbjct: 2000 GERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGV-GEAGRPG 2058 Query: 415 -RGQRLQVRAHGEQ 453 RG+R + GEQ Sbjct: 2059 ERGERGEKGERGEQ 2072
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 28.9 bits (63), Expect = 7.9 Identities = 19/49 (38%), Positives = 20/49 (40%) Frame = +1 Query: 226 ALDQGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQP 372 A D G VEH P R R + P PRP PP A A QP Sbjct: 27 AQDGGGPVEHDRSAPADKPAERTRPK---PAPPERPRPPPPRARAAGQP 72
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 28.9 bits (63), Expect = 7.9 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 3/96 (3%) Frame = +2 Query: 44 GYAPPVPYGMSQVNVDGNCGGR---PMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANPK 214 G PP + VN+ G+ PMPP+PT+ NP M R K + + P Sbjct: 968 GPPPPTASQPASVNIPGSLPSSTPYPMPPEPTLS----QNPLSIMMSRMSKFAMPSSTPL 1023 Query: 215 DDYQHWIKDMRWSTSIKDEEGYPAFAIVNKATGQAI 322 Y IK + S P +N G I Sbjct: 1024 --YHDAIKTVASSDDDSPPARSPNLPSMNSMPGMGI 1057
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = +1 Query: 277 LPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPG 384 LP LR Q H PG +P C G + PG G Sbjct: 860 LPALRSHFQNHRPGEATSAQPFLCCLCGMIFPGRAG 895
>GUN5_THEFU (Q01786) Endoglucanase E-5 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E-4) (Cellulase E-5) (Cellulase E5) Length = 466 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Frame = -3 Query: 413 PCSPSTAPTRPGSPGCTAPD--AQGGTG 336 PC + P PG PG +PD Q GTG Sbjct: 135 PCDEGSEPGGPGGPGTPSPDPGTQPGTG 162
>AGALC_ASPNG (Q9UUZ4) Alpha-galactosidase C precursor (EC 3.2.1.22) (Melibiase)| Length = 747 Score = 28.9 bits (63), Expect = 7.9 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 328 LPRPVPPCASGAVQPGLPGRVGAVDGEQGRG 420 +P PV P +G V G+PGR+ +QGRG Sbjct: 74 IPSPVEPAVNGWV--GMPGRIRREFPDQGRG 102
>TUP11_SCHPO (Q09715) Transcriptional repressor tup11| Length = 614 Score = 28.9 bits (63), Expect = 7.9 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 17/80 (21%) Frame = +2 Query: 38 TPGYAPPVPYGMSQVNVDGN-------------CGGRP----MPPQPTVKIYCRANPNYA 166 TP Y PPV YG +QV+ N +P PP+ K A P+ Sbjct: 191 TPLYIPPVNYGANQVSQQPNPQLPGVSNYYNPSATSKPAVNVQPPRIPTKATPSAEPSMT 250 Query: 167 MSVRNGKVVLAPANPKDDYQ 226 S G + + A P +YQ Sbjct: 251 ASANAGSI--SQAGPDGEYQ 268 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,770,445 Number of Sequences: 219361 Number of extensions: 1367529 Number of successful extensions: 7453 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 6213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7392 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
