>MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding|
           protein MBD1)
          Length = 636

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 133 PVTKPTLHVTVNMGAISPAEYSTQATSKITSCCSSLGFHFA 11
           P       ++V+  A S A  S  A+S    CC + G HF+
Sbjct: 119 PTATALASLSVSASASSSASASASASSHAPVCCENCGIHFS 159

>SALL3_MOUSE (Q62255) Sal-like protein 3 (Spalt-like protein 3) (MSal)|
           (Fragment)
          Length = 1323

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 139 QLPVTKPTLHVTVNMGAISPAEYSTQATSKITSCCSSL 26
           QLP T P  H   +  +I+P   S Q  S  +S C+SL
Sbjct: 507 QLPPTVPGTHNYTDSPSITPVSRSPQRPSPASSECTSL 544

>END4_MESFL (Q6F1D3) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)|
           (Endodeoxyribonuclease IV)
          Length = 293

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 143 KPVTGDQTHFTRDCKHGGY*PSGVQHPGHFQNYVMLFVTGFP 18
           KP+ G     ++  KHG Y    V+    ++   ++F TG P
Sbjct: 3   KPILGSHVGMSKSNKHGEYLIGSVKEALSYEANTLMFYTGAP 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,095,669
Number of Sequences: 219361
Number of extensions: 562974
Number of successful extensions: 1333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)