ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal26h02 |
|---|---|
| Clone Library Name | barley_pub |
>PKP1_HUMAN (Q13835) Plakophilin-1 (Band-6 protein) (B6P)| Length = 747 Score = 32.7 bits (73), Expect = 0.74 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Frame = +3 Query: 120 LSLGIAEQCARQEK----ILKFLMSG-SDVKELDASLLTELTGHPMLSANMGSQPY 272 +S G+++ +EK I + L SG SDV ASLL+ ++ HP+L MG+Q + Sbjct: 582 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVF 637
>BGAL_BACST (P19668) Beta-galactosidase 1 (EC 3.2.1.23) (Beta-galactosidase I)| (Lactase) Length = 672 Score = 32.3 bits (72), Expect = 0.97 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%) Frame = +3 Query: 183 GSDVKELDASLLTELTGHPML--------SANMGSQPYTPDDKLSVYEFGLEEPLQYLAE 338 G ++K+LD + + + + + + S+P+ + + E E + Sbjct: 376 GQELKKLDCLVGSRIKAEVAIIFDWENWWAVELSSKPHNKLRYIPIVEAYYRELYKRNIA 435 Query: 339 NQLILPDDKLSIYEFGSEEPLQYLSENQLIIPDPLLEFAQSQGALAI-------DENGRV 497 + P D L+ Y+ L + E + + L +F + G L + DEN RV Sbjct: 436 VDFVRPSDDLTKYKVVIAPMLYMVKEGE---DENLRQFVANGGTLIVSFFSGIVDENDRV 492 Query: 498 IFTGSGEEMRDLLSVFLEFNVP 563 G +RD+L +F+E VP Sbjct: 493 HLGGYPGPLRDILGIFVEEFVP 514
>PKP1_MOUSE (P97350) Plakophilin-1| Length = 728 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +3 Query: 126 LGIAEQCARQEKILKFLMSG-SDVKELDASLLTELTGHPMLSANMGSQPY 272 +GI E+ Q I + L SG SDV ASLL+ ++ HP+L MG+Q + Sbjct: 570 IGIKEKGLPQ--IARLLQSGNSDVVRSGASLLSNMSRHPVLHRVMGNQVF 617
>YE14_YEAST (P39961) Putative 91.1 kDa transcriptional regulatory protein in| ISC10 3'region Length = 794 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 7/79 (8%) Frame = +3 Query: 120 LSLGIAEQCARQEKILKFLMSGSDVKELDA-----SLLTELTGHPMLSANMGSQPYTPD- 281 L G+A C EKI L D KE+ + S+ TE+ G S N S + + Sbjct: 90 LQKGLANICTELEKIQPQLYLNLDSKEISSYGGLKSIETEIIGKQSKSLNRFSNAFESNT 149 Query: 282 -DKLSVYEFGLEEPLQYLA 335 +S+Y FG+ PL Y A Sbjct: 150 AQNVSMY-FGVYSPLLYFA 167
>PKP1_BOVIN (Q28161) Plakophilin-1 (Band-6 protein) (B6P)| Length = 727 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +3 Query: 120 LSLGIAEQCARQEK----ILKFLMSG-SDVKELDASLLTELTGHPMLSANMGSQPY 272 +S G+++ +EK I + L SG SDV ASLL+ ++ HP L MG+Q + Sbjct: 562 MSSGMSQLIGLKEKGLPHIARLLQSGNSDVVRSGASLLSNMSRHPALHRVMGTQVF 617
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 30.8 bits (68), Expect = 2.8 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%) Frame = +3 Query: 213 LLTELTGHPMLSANMGSQPYTPDDKLSVYEFGLEEPLQYL-----------AENQLILPD 359 L+ E G+ L + + +D ++ Y L + L YL +N L+ PD Sbjct: 3037 LIAESCGNRELLCGLSDRFRYSEDDVATYMVQLLQGLDYLHGHHVLHLDIKPDNLLLAPD 3096 Query: 360 DKLSIYEFGSEEP 398 + L I +FGS +P Sbjct: 3097 NALKIVDFGSAQP 3109
>SYFB_IDILO (Q5QXL8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 30.4 bits (67), Expect = 3.7 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 36/156 (23%) Frame = +3 Query: 108 DSVRLSLGIAEQCAR-------------------QEKILKF-LMSGSDVKELDASLLTEL 227 D++ +SL AEQC R EK+ + + S V ++ +L EL Sbjct: 201 DTLSISLSAAEQCPRYLGRVIKGVDLTRPTPVWMTEKLRRSGIRSIDPVVDVTNYVLLEL 260 Query: 228 TGHPM-------LSANMGSQPYTPDDKLSVYEFGLEEPLQYLAENQLILPDDKLSIYEFG 386 GHPM L N+ + P ++L++ L+E L L E+ L++ D+K ++ G Sbjct: 261 -GHPMHAFDLDSLEGNIDVRLAKPKEQLTL----LDEQLVELDEDTLVIADEKKALAMAG 315 Query: 387 ---------SEEPLQYLSENQLIIPDPLLEFAQSQG 467 +E E+ PD +L A+ G Sbjct: 316 VYGGKNSGVTESSKNIFLESAFFAPDAILGKARRYG 351
>ELK4_HUMAN (P28324) ETS domain-containing protein Elk-4 (Serum response factor| accessory protein 1) (SAP-1) Length = 431 Score = 30.0 bits (66), Expect = 4.8 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 424 LSSLIHFWNLLSPKVPLL*MKMAGSSSL 507 L S IHFW+ LSP PL ++ G+++L Sbjct: 370 LLSSIHFWSTLSPVAPLSPARLQGANTL 397
>ELK3_HUMAN (P41970) ETS domain-containing protein Elk-3 (ETS-related protein| NET) (ETS-related protein ERP) (SRF accessory protein 2) (SAP-2) Length = 407 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +1 Query: 424 LSSLIHFWNLLSPKVPLL*MKMAGSSSL 507 L S IHFW+ LSP PL ++ G S+L Sbjct: 346 LLSSIHFWSSLSPVAPLSPARLQGPSTL 373
>FZD7_HUMAN (O75084) Frizzled 7 precursor (Frizzled-7) (Fz-7) (hFz7) (FzE3)| Length = 574 Score = 30.0 bits (66), Expect = 4.8 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = +3 Query: 243 LSANMGSQPYTPDDKLSVYEFGLEEPLQY-----LAENQLILPD 359 LSA G+QPY + +SV + G +P+ +A NQ ILP+ Sbjct: 26 LSAGAGAQPYHGEKGISVPDHGFCQPISIPLCTDIAYNQTILPN 69
>DOCK9_MOUSE (Q8BIK4) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide| exchange factor zizimin 1) Length = 2055 Score = 29.6 bits (65), Expect = 6.3 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = +3 Query: 123 SLGIAEQCARQEKILKFLMSGSDVKELDASLLTELTGHPMLSANMGSQPYTPD 281 SL I CA ++I+K SDVK+L + T L M +A M P+ Sbjct: 1555 SLSIINNCANSDRIIKHTSFSSDVKDLTKRIRTVL----MATAQMKEHENDPE 1603
>AMZ1_HUMAN (Q400G9) Archaemetzincin-1 (EC 3.-.-.-) (Archeobacterial| metalloproteinase-like protein 1) Length = 498 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 204 DASLLTELTGHPMLSANMGSQPYTPDDKLSVYEFGLEEPLQYLAENQLILP 356 D+ + E P S S+P TPD + G EE L YLA ++ LP Sbjct: 349 DSGMCCESDSEPGTSV---SEPLTPDAGSHTFASGPEEGLSYLAASEAPLP 396
>PRM8_YEAST (P53174) Pheromone-regulated membrane protein 8 (DUP240 protein| PRM8) (DUP1 protein) Length = 237 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Frame = +3 Query: 273 TPDDKLSVYEFGLEEPLQYLAENQLILPDD------KLSIYEFGSEEPLQYLSENQLIIP 434 TP + + L+EP YL E + LP D IYE P+ LS ++ Sbjct: 3 TPSENTNAKSDSLDEPGAYLIEENVALPKDIFHSYLSYWIYEAAHCTPVMLLSLVIGVLI 62 Query: 435 DPLLEFAQSQGALAIDENGRVIFTG 509 ++ F ++ + + +IF+G Sbjct: 63 SIIILFHDNENCVGVSVGFLLIFSG 87
>RS2_RHILO (Q98MB2) 30S ribosomal protein S2| Length = 260 Score = 29.3 bits (64), Expect = 8.2 Identities = 15/59 (25%), Positives = 32/59 (54%) Frame = +3 Query: 363 KLSIYEFGSEEPLQYLSENQLIIPDPLLEFAQSQGALAIDENGRVIFTGSGEEMRDLLS 539 K++ Y +G+ + + +Q + PLL A Q + + + GRV+F G+ + D+++ Sbjct: 28 KMAPYIYGARNNIHIIDLSQTV---PLLHQALKQVSDTVAKGGRVLFVGTKRQASDIVA 83
>ILVB_ARATH (P17597) Acetolactate synthase, chloroplast precursor (EC 2.2.1.6)| (Acetohydroxy-acid synthase) (ALS) Length = 670 Score = 29.3 bits (64), Expect = 8.2 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 222 ELTGHPMLSANMGSQPYTPDDKLSVYEFGL 311 ELTG P+ S MG Y DD+LS++ G+ Sbjct: 322 ELTGIPVASTLMGLGSYPCDDELSLHMLGM 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,115,809 Number of Sequences: 219361 Number of extensions: 1432774 Number of successful extensions: 3361 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3361 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
