Clone Name	baal26g19
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	634	e-179
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	599	e-168
3	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	496	e-137
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	331	9e-88
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	228	9e-57
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	222	6e-55
7	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	172	5e-40
8	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	172	5e-40
9	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	172	5e-40
10	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	172	5e-40
11	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	172	5e-40
12	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	172	5e-40
13	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	172	5e-40
14	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	165	1e-37
15	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	131	2e-27
16	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	125	1e-25
17	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	125	1e-25
18	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
19	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	125	1e-25
20	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	125	1e-25
21	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	123	4e-25
22	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	92	1e-15
23	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	92	1e-15
24	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	80	5e-12
25	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	80	5e-12
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	80	5e-12
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	64	3e-07
28	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	54	3e-04
29	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	50	0.005
30	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.074
31	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.29
32	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	1.2
33	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	1.2
34	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	1.2
35	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	1.2
36	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	1.2
37	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	4.6
38	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	4.6
39	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	4.6
40	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	4.6
41	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	4.6
42	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	4.6
43	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	4.6
44	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	4.6
45	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	4.6
46	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	4.6
47	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	4.6
48	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	4.6
49	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	4.6
50	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	4.6
51	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	4.6
52	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	4.6
53	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	4.6
54	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	4.6
55	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	4.6
56	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	4.6
57	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	4.6
58	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	4.6
59	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	4.6
60	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	4.6
61	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	4.6
62	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	4.6
63	gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana...	40	4.6
64	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	4.6
65	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	4.6
66	gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	4.6
67	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	4.6
68	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	4.6
69	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	4.6
70	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	4.6
71	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	4.6
72	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	4.6

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  634 bits (320), Expect = e-179
 Identities = 340/346 (98%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccgcgcgcatccaccgttgctagcaaggtcgaccnagcagcacagagatggctgctg 60
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 93  cagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctgctg 151

                                                                       
Query: 61  ccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagc 211

                                                                       
Query: 121 tcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggt 271

                                                                       
Query: 181 tcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtc 331

                                                                       
Query: 241 ttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggact 300
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggact 391

                                                         
Query: 301 cgctcttncaggcgcccacgggcgacggcacccacgaggccgtcct 346
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cgctcttccaggcgcccacgggcgacggcacccacgaggccgtcct 437

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  599 bits (302), Expect = e-168
 Identities = 330/340 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   cgcgcatccaccgttgctagcaaggtcgaccnagcagcacagagatggctgctgccttct 66
           ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 18  cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77

                                                                       
Query: 67  cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaaga 126
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaaga 137

                                                                       
Query: 127 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacag 186
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 138 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacgg 197

                                                                       
Query: 187 tcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 246
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 257

                                                                       
Query: 247 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctct 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctct 317

                                                   
Query: 307 tncaggcgcccacgggcgacggcacccacgaggccgtcct 346
           | ||||||||||| ||||||||||||||||||||||||||
Sbjct: 318 tccaggcgcccactggcgacggcacccacgaggccgtcct 357

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  496 bits (250), Expect = e-137
 Identities = 258/261 (98%)
 Strand = Plus / Plus

                                                                        
Query: 86   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 146  gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 206  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                                        
Query: 266  gcaggacatcaccagagggaagggcatcgtggactcgctcttncaggcgcccacgggcga 325
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757

                                 
Query: 326  cggcacccacgaggccgtcct 346
            |||||||||||||||||||||
Sbjct: 5758 cggcacccacgaggccgtcct 5778



 Score =  151 bits (76), Expect = 2e-33
 Identities = 85/87 (97%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagccgcgcgcatccaccgttgctagcaaggtcgaccnagcagcacagagatggctgctg 60
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 5313 cagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctgctg 5371

                                       
Query: 61   ccttctcctccaccgtcggggctccgg 87
            |||||||||||||||||||||||||||
Sbjct: 5372 ccttctcctccaccgtcggggctccgg 5398



 Score =  123 bits (62), Expect = 4e-25
 Identities = 103/117 (88%)
 Strand = Plus / Plus

                                                                        
Query: 230  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                     
Query: 290  catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtcct 346
            |||||||||||| || || ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcct 3055

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  331 bits (167), Expect = 9e-88
 Identities = 178/182 (97%)
 Strand = Plus / Plus

                                                                       
Query: 165 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180

             
Query: 345 ct 346
           ||
Sbjct: 181 ct 182

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  228 bits (115), Expect = 9e-57
 Identities = 139/147 (94%)
 Strand = Plus / Plus

                                                                       
Query: 47  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 106
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 107 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 166
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                      
Query: 167 caaggccaacaggttcacagtcatggc 193
           |||||||||||||||||| ||||||||
Sbjct: 196 caaggccaacaggttcaccgtcatggc 222



 Score =  149 bits (75), Expect = 7e-33
 Identities = 110/122 (90%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           ||||| ||||| ||||| || || |||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

             
Query: 345 ct 346
           ||
Sbjct: 377 ct 378

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  222 bits (112), Expect = 6e-55
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 47  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 106
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 107 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 166
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                      
Query: 167 caaggccaacaggttcacagtcatggc 193
           |||||||||||||||||| ||||||||
Sbjct: 186 caaggccaacaggttcaccgtcatggc 212



 Score =  135 bits (68), Expect = 1e-28
 Identities = 108/122 (88%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           ||||| ||||| |||||  | || |||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

             
Query: 345 ct 346
           ||
Sbjct: 367 ct 368

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  172 bits (87), Expect = 5e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167



 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

             
Query: 345 ct 346
           ||
Sbjct: 332 ct 333

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  172 bits (87), Expect = 5e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159



 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

             
Query: 345 ct 346
           ||
Sbjct: 324 ct 325

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  172 bits (87), Expect = 5e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207



 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

             
Query: 345 ct 346
           ||
Sbjct: 372 ct 373

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  172 bits (87), Expect = 5e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                        
Query: 285 aagggcatcgtggactcgctcttncaggc 313
           |||||  |||| ||||| || || |||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  172 bits (87), Expect = 5e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196



 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

             
Query: 345 ct 346
           ||
Sbjct: 361 ct 362

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  172 bits (87), Expect = 5e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

             
Query: 345 ct 346
           ||
Sbjct: 360 ct 361

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  172 bits (87), Expect = 5e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194



 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

             
Query: 345 ct 346
           ||
Sbjct: 359 ct 360

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  165 bits (83), Expect = 1e-37
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 49  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 108
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 109 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 168
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 169 aggccaacaggttca 183
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200



 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

             
Query: 345 ct 346
           ||
Sbjct: 365 ct 366

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  131 bits (66), Expect = 2e-27
 Identities = 104/117 (88%)
 Strand = Plus / Plus

                                                                       
Query: 230 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                    
Query: 290 catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtcct 346
           |||||||||||| || || ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcct 333



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 50  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 109
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 110 cgggaagaagctcaagaagcagg 132
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                          
Query: 225    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 285    aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
              |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                
Query: 345    ct 346
              ||
Sbjct: 109586 ct 109585



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                          
Query: 230    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 290    catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggc 340
              | |||| ||||| || || ||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 96     ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 155
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 156    ggcaagagctccaaggccaacaggttca 183
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 49     agatggctgctgccttctcctccaccgtcggggctccgg 87
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                         
Query: 225   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 285   aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
             |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

               
Query: 345   ct 346
             ||
Sbjct: 31463 ct 31462



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                         
Query: 230   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 290   catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggc 340
             | |||| ||||| || || ||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 96    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 155
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 156   ggcaagagctccaaggccaacaggttca 183
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 49    agatggctgctgccttctcctccaccgtcggggctccgg 87
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                            
Query: 225      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 285      aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
                |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                  
Query: 345      ct 346
                ||
Sbjct: 28304725 ct 28304724



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                            
Query: 230      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 290      catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggc 340
                | |||| ||||| || || ||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 96       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 155
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 156      ggcaagagctccaaggccaacaggttca 183
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 49       agatggctgctgccttctcctccaccgtcggggctccgg 87
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
           |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

             
Query: 345 ct 346
           ||
Sbjct: 144 ct 145

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  125 bits (63), Expect = 1e-25
 Identities = 107/122 (87%)
 Strand = Plus / Minus

                                                                            
Query: 225      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 285      aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtc 344
                |||||  |||| ||||| || || ||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                  
Query: 345      ct 346
                ||
Sbjct: 28287174 ct 28287173



 Score =  119 bits (60), Expect = 6e-24
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                            
Query: 230      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 290      catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggc 340
                | |||| ||||| || || ||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 96       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 155
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 156      ggcaagagctccaaggccaacaggttca 183
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 49       agatggctgctgccttctcctccaccgtcggggctccgg 87
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  123 bits (62), Expect = 4e-25
 Identities = 103/117 (88%)
 Strand = Plus / Plus

                                                                       
Query: 230 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                    
Query: 290 catcgtggactcgctcttncaggcgcccacgggcgacggcacccacgaggccgtcct 346
           |||||||||||| || || ||||| |||| |||||||||||||||||||||| ||||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcct 486

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 51  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 104
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 105 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 161
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 162 agctcca 168
           |||||||
Sbjct: 141 agctcca 147



 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                               
Query: 285 aagggcatcgtggactcgctcttncaggcgcccacgggcgacggcacccacg 336
           |||||| |||| |||   ||||| |||||||| | ||| |||||||||||||
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacg 324

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 51  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 104
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 105 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 161
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 162 agctcca 168
           |||||||
Sbjct: 141 agctcca 147



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 78/92 (84%)
 Strand = Plus / Plus

                                                                       
Query: 225 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 284
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                           
Query: 285 aagggcatcgtggactcgctcttncaggcgcc 316
           |||||| |||| |||   ||||| ||||||||
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcc 304

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 261 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggcgcccacg 320
           |||||||||||||||||||| ||||||||||| || ||||| || || ||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                          
Query: 321 ggcgacggcacccac 335
           |||||||| ||||||
Sbjct: 295 ggcgacggaacccac 309

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 261 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggcgcccacg 320
           |||||||||||||||||||| ||||||||||| || ||||| || || ||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                          
Query: 321 ggcgacggcacccac 335
           |||||||| ||||||
Sbjct: 158 ggcgacggaacccac 172

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 261 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggcgcccacg 320
           |||||||||||||||||||| ||||||||||| || ||||| || || ||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                          
Query: 321 ggcgacggcacccac 335
           |||||||| ||||||
Sbjct: 188 ggcgacggaacccac 202

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 231 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 286
           |||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 231 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 289
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 254 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttncaggc 313
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| ||||| |||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 256     ccgacgaccagcaggacatcacc 278
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 113    gaagaagctcaagaagcaggtg 134
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  cagcacagagatggctgctgc 61
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  cagcacagagatggctgctgc 61
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  cagcacagagatggctgctgc 61
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  cagcacagagatggctgctgc 61
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 41  cagcacagagatggctgctgc 61
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     catggcagcggagaacatcg 207
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 252  atctccgacgaccagcaggacatc 275
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gcagcggagaacatcgacga 211
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 315  cccacgggcgacggcacccacgag 338
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  gcaagagctccaaggccaac 176
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     ctgccttctcctccaccgtc 77
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     catggcagcggagaacatcg 207
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 315 cccacgggcgacggcacccacgag 338
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   ctgctgccttctcctccacc 74
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 55 ctgctgccttctcctccacc 74
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 55 ctgctgccttctcctccacc 74
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  gaagaagctcaagaagcagg 132
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 315    cccacgggcgacggcacccacgag 338
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tggctgctgccttctcctcc 71
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ccagagggaagggcatcgtg 296
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     acagagatggctgctgcctt 64
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  gcaagagctccaaggccaac 176
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   ccagagggaagggcatcgtg 296
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 315 cccacgggcgacggcacccacgag 338
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 167   caaggccaacaggttcacagtcat 190
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     cgatatctccgacgaccagc 267
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   caaggccaacaggttcacagtcat 190
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   aagaagctcaagaagcaggt 133
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tggctgctgccttctcctcc 71
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 48     gagatggctgctgccttctcctcc 71
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 315 cccacgggcgacggcacccacgag 338
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  tggctgctgccttctcctcc 71
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,508,964
Number of Sequences: 3902068
Number of extensions: 2508964
Number of successful extensions: 48082
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47817
Number of HSP's gapped (non-prelim): 261
length of query: 346
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 324
effective length of database: 17,147,199,772
effective search space: 5555692726128
effective search space used: 5555692726128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---