ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26g13 |
|---|---|
| Clone Library Name | barley_pub |
>GATB_METMA (Q8PXJ0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 495 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +2 Query: 20 PVRRSRIFDECIRFLEYLEEFDGNWDDAFLNWVNVSQRW 136 P R D+ LEYL+ FDGN + A NVS W Sbjct: 171 PKEARRFLDKFRNILEYLDVFDGNLEGAMRVDANVSVHW 209
>GATB_METAC (Q8THJ0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 495 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/39 (41%), Positives = 19/39 (48%) Frame = +2 Query: 20 PVRRSRIFDECIRFLEYLEEFDGNWDDAFLNWVNVSQRW 136 P R D+ LEYL+ FDGN + A NVS W Sbjct: 171 PKEARRFLDKFRNILEYLDVFDGNLEGAMRVDANVSVHW 209
>BMS1_SCHPO (O94653) Ribosome biogenesis protein BMS1 homolog| Length = 1121 Score = 29.6 bits (65), Expect = 5.1 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = +2 Query: 260 ARHPVVLNVNDWMFCHGGLLPHHVEYGIERINKEVSNWMQGSSEDNDDTDLPFIATRGYD 439 +R+PVV+ GGLLP+ YG+ ++ + W + + ND P I + G Sbjct: 743 SRYPVVV---------GGLLPNEQRYGLVQVRIKRHRWHKKILKTND----PLIFSMG-- 787 Query: 440 SVVWTRFYS 466 W RF S Sbjct: 788 ---WRRFQS 793
>SACB2_NEIMA (O68215) Capsular polysaccharide phosphotransferase sacB (EC| 2.7.-.-) (Stealth protein sacB) Length = 545 Score = 29.6 bits (65), Expect = 5.1 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 14/153 (9%) Frame = +2 Query: 92 WDDAF-LNWVNVSQRWKEEYRASPNGDWLPLNFVKKNKGLAARASLFKQGGPLACELARH 268 W D F + V++ +S + W L F K++K LF + +L +H Sbjct: 150 WTDLFSIAHVDMKLSTDRTLSSSISQFWFRLEFCKEDKDFI----LFSTANRYSRKLWKH 205 Query: 269 PVVLNVNDWMFCHG-------GLLPHHVEYGIER------INKEVSNWMQGSSEDNDDTD 409 + N+ +F G LP+ ++ + +N E NW + + D + Sbjct: 206 SIK---NNQLFKEGIRNYSEISSLPYEEDHNFDIDLVFTWVNSEDKNWQELYKKYKPDFN 262 Query: 410 LPFIATRGYDSVVWTRFYSQDSVERTRRSWDLS 508 D+ +RF S+D ++ RSW++S Sbjct: 263 S--------DATSTSRFLSRDELKFALRSWEMS 287
>ACES_BOVIN (P23795) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 613 Score = 29.3 bits (64), Expect = 6.7 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +2 Query: 185 FVKKNKGLAARASLF---KQGGPLACELARHPVVLNVNDWM 298 F K N+ L +RA + G P A +LA VVL+ DW+ Sbjct: 376 FSKDNESLISRAQFLAGVRVGVPQASDLAAEAVVLHYTDWL 416
>ACES_FELCA (O62763) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 611 Score = 29.3 bits (64), Expect = 6.7 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +2 Query: 185 FVKKNKGLAARASLF---KQGGPLACELARHPVVLNVNDWM 298 F K N+ L +RA + G P A +LA VVL+ DW+ Sbjct: 374 FSKDNESLISRAQFLAGVRVGVPQASDLAAEAVVLHYTDWL 414
>REXO4_KLULA (Q6CMT3) RNA exonuclease 4 (EC 3.1.-.-)| Length = 294 Score = 28.9 bits (63), Expect = 8.7 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = +2 Query: 212 ARASLFKQGGPLACELARHPVVLNVNDWMFCHGGLLPHHVEYGI--ERINKEVSNWMQG 382 AR S+ G + +L P V DW G+ PHH+ + E K+VSN ++G Sbjct: 139 ARVSIVNYYGNVVLDLFVRPKE-PVTDWRTWVSGIKPHHMANAVTQEDCQKQVSNVLKG 196
>APAH_VIBPA (Q87ST8) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 268 Score = 28.9 bits (63), Expect = 8.7 Identities = 19/85 (22%), Positives = 37/85 (43%) Frame = +2 Query: 191 KKNKGLAARASLFKQGGPLACELARHPVVLNVNDWMFCHGGLLPHHVEYGIERINKEVSN 370 +K+K L K L LA+ P++ ++++ CH G+ P + +EV Sbjct: 80 RKDKDKTTPIFLAKDREELLSWLAKQPLLAEHDEFVMCHAGISPQWDLETARQCAREVER 139 Query: 371 WMQGSSEDNDDTDLPFIATRGYDSV 445 +QG +LP++ Y ++ Sbjct: 140 IIQGE-------ELPWLLKNMYSNL 157
>ERD1_KLULA (P41771) Protein ERD1| Length = 384 Score = 28.9 bits (63), Expect = 8.7 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Frame = +2 Query: 92 WDDAFLNWVNVSQRWKEEYRASPNGDWLPLNFVKKNK--GLAARASLFKQGGPLACELAR 265 W+ A+ W +V+ WK E NGD N NK GL L+++ +A Sbjct: 266 WNSAYSFWWDVTMDWKLELFDFVNGDTSVNNNNSSNKADGLLRSILLYRKNAWYYSAMAL 325 Query: 266 HPVVLNVNDWMFCHGGLLPHHVEYG 340 ++ V W + G H V YG Sbjct: 326 DFILRFVWFWEYISG----HSVFYG 346
>ACES_RAT (P37136) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 614 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +2 Query: 185 FVKKNKGLAARASLF---KQGGPLACELARHPVVLNVNDWM 298 F K N+ L +RA + G P A +LA VVL+ DW+ Sbjct: 377 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWL 417
>ACES_MOUSE (P21836) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 614 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +2 Query: 185 FVKKNKGLAARASLF---KQGGPLACELARHPVVLNVNDWM 298 F K N+ L +RA + G P A +LA VVL+ DW+ Sbjct: 377 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWL 417
>ACES_CHICK (P36196) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)| Length = 767 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +2 Query: 185 FVKKNKGLAARASLF---KQGGPLACELARHPVVLNVNDWM 298 F K N+ L +R + G P A ELA VVL+ DW+ Sbjct: 532 FGKDNESLISREEFLGGVRMGVPQATELAAEAVVLHYTDWL 572
>COATA_BPPF1 (P25129) Probable coat protein A precursor| Length = 437 Score = 28.9 bits (63), Expect = 8.7 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = +2 Query: 65 EYLEEFDGNWDDAFLNWVNVSQRWKEEYRASPNGDWLPLNFVKKNKGLAARASLFKQGGP 244 E E G WDDA W + K+E + + V + KG A +L + GG Sbjct: 339 ELKEPTPGTWDDAIATWEKKVEEAKKELKTKVKAN------VDQMKG-AFDLNLAEGGGQ 391 Query: 245 LACE 256 L CE Sbjct: 392 LPCE 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,212,174 Number of Sequences: 219361 Number of extensions: 1652253 Number of successful extensions: 4539 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4538 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
