ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal26f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ICS_CATRO (Q9ZPC0) Isochorismate synthase, chloroplast precursor... 32 0.45
2MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3) 28 5.0
3Y1659_METJA (Q59053) Hypothetical ATP-binding protein MJ1659 28 6.6
4Y1006_METJA (Q58412) Hypothetical ATP-binding protein MJ1006 28 6.6
5Y3526_METJA (Q60285) Hypothetical ATP-binding protein MJECL26 28 8.6
6K0971_MOUSE (Q922E6) Protein KIAA0971 homolog 28 8.6

>ICS_CATRO (Q9ZPC0) Isochorismate synthase, chloroplast precursor (EC 5.4.4.2)|
          Length = 580

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 37  DKNLFAVCLFGDSVRRRDP*QWSSD*WLCILWFVCLNCCL 156
           DKNL +V   G +V  R P  +S D WL I  F+  NC L
Sbjct: 173 DKNLVSVAGVGSAVLFRSPNPFSFDDWLSIKRFLSKNCPL 212



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>MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3)|
          Length = 1133

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -1

Query: 135 EPEYTQPLIRTPLSWISSTYRVSE*THSKEIFIEV---QREPGSTG 7
           EPE++QP   TPLS  S++ + S+ +HS    + +   Q  P S+G
Sbjct: 338 EPEFSQPATETPLSQESASVK-SDPSHSPFAHVSMGSPQARPSSSG 382



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>Y1659_METJA (Q59053) Hypothetical ATP-binding protein MJ1659|
          Length = 361

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +2

Query: 50  LLCVYSETLYVEEIHDNGVLINGCVY 127
           +LC+ S++L++E +++ G L + C Y
Sbjct: 191 VLCLSSDSLFIERVYNEGTLKDRCKY 216



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>Y1006_METJA (Q58412) Hypothetical ATP-binding protein MJ1006|
          Length = 359

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  LLCVYSETLYVEEIHDNGVLINGCVY 127
           ++C+ S+TL++EEI+ N  L N   Y
Sbjct: 192 VICLTSDTLFIEEIYRNSTLENTSEY 217



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>Y3526_METJA (Q60285) Hypothetical ATP-binding protein MJECL26|
          Length = 343

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  LLCVYSETLYVEEIHDNGVLINGCVY 127
           ++C+ S+TL+++EI+ N  L N   Y
Sbjct: 174 VICLTSDTLFIDEIYRNSTLKNASEY 199



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>K0971_MOUSE (Q922E6) Protein KIAA0971 homolog|
          Length = 689

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +2

Query: 17  PGSLCTSIKISLLCVYSETLYVEEIHDNGVL------INGCVYSGSS 139
           PGSL     +S+L VYS   +V +IH+   L      + GC++  SS
Sbjct: 434 PGSLNVKNIVSILHVYSSLNHVHKIHNREFLEALASALTGCLHHISS 480


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,094,754
Number of Sequences: 219361
Number of extensions: 466877
Number of successful extensions: 1237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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