Clone Information

BLAST Search Result

Clone Name	baal25p22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ534445.1\|HVU534445 Hordeum vulgare mRNA for hexose transpo...	618	e-174
2	emb\|AJ534446.1\|HVU534446 Hordeum vulgare mRNA for sugar transpor...	587	e-165
3	ref\|NM_197573.1\| Oryza sativa (japonica cultivar-group) putative...	268	1e-68
4	dbj\|AK067391.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	268	1e-68
5	dbj\|AK065191.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	268	1e-68
6	dbj\|AK102640.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	260	2e-66
7	gb\|AC073166.7\| Oryza sativa chromosome 10 BAC OSJNBb0064P21 geno...	258	9e-66
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	258	9e-66
9	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	258	9e-66
10	gb\|AY861386.1\| Vitis vinifera hexose transporter 6 (HT6) mRNA, c...	60	4e-06
11	gb\|DQ017393.1\| Vitis vinifera cultivar Syrah putative hexose tra...	60	4e-06
12	ref\|XM_464773.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.017
13	gb\|AE016795.2\| Vibrio vulnificus CMCP6 chromosome I complete seq...	48	0.017
14	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.017
15	dbj\|AP005756.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.017
16	dbj\|AK120560.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.017
17	dbj\|BA000037.2\| Vibrio vulnificus YJ016 DNA, chromosome I, compl...	44	0.26
18	gb\|BT009593.1\| Triticum aestivum clone wre1n.pk0062.g6:fis, full...	42	1.0
19	emb\|CR628406.8\| Zebrafish DNA sequence from clone CH211-146A2 in...	42	1.0
20	gb\|CP000157.1\| Erythrobacter litoralis HTCC2594, complete genome	42	1.0
21	gb\|AY105508.1\| Zea mays PCO114533 mRNA sequence	42	1.0
22	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	4.1
23	gb\|AC144809.2\| Mus musculus BAC clone RP24-391L5 from chromosome...	40	4.1
24	emb\|CT025534.4\| M.truncatula DNA sequence from clone MTH2-1H4 on...	40	4.1
25	gb\|AC117214.3\| Mus musculus BAC clone RP23-307B15 from chromosom...	40	4.1
26	emb\|CR936365.7\| Zebrafish DNA sequence from clone CH73-41C10 in ...	40	4.1
27	gb\|AC121239.34\| Medicago truncatula clone mth1-8p19, complete se...	40	4.1
28	emb\|AL096799.6\|HSJ764O22 Human DNA sequence from clone RP4-764O2...	40	4.1
29	emb\|AL035415.22\|HS705F19 Human DNA sequence from clone RP4-705F1...	40	4.1
30	emb\|BX511150.6\| Zebrafish DNA sequence from clone CH211-234E22 i...	40	4.1
31	emb\|CR847930.5\| Zebrafish DNA sequence from clone DKEY-148H19 in...	40	4.1
32	emb\|BX324131.6\| Zebrafish DNA sequence from clone CH211-119E14 i...	40	4.1
33	ref\|XM_693966.1\| PREDICTED: Danio rerio similar to deltex 4 homo...	40	4.1
34	emb\|BX548049.9\| Zebrafish DNA sequence from clone DKEY-217J16 in...	40	4.1
35	emb\|BX005383.8\| Zebrafish DNA sequence from clone DKEYP-19E1 in ...	40	4.1
36	dbj\|AK099716.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	4.1
37	emb\|BX908392.13\| Zebrafish DNA sequence from clone DKEY-192M14 i...	40	4.1
38	emb\|BX537287.8\| Zebrafish DNA sequence from clone CH211-206O8 in...	40	4.1
39	emb\|AL935146.13\| Zebrafish DNA sequence from clone CH211-171D11 ...	40	4.1
40	gb\|AF005382.1\|AF005382 Caldicellulosiruptor saccharolyticus puta...	40	4.1

>emb|AJ534445.1|HVU534445 Hordeum vulgare mRNA for hexose transporter (stp1 gene)
          Length = 2614

 Score =  618 bits (312), Expect = e-174
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    gggcaaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 gggcaaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgat 1438

                                                                        
Query: 61   cggagaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 cggagaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatc 1498

                                                                        
Query: 121  caggcagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 caggcagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcag 1558

                                                                        
Query: 181  cttgctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 cttgctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggca 1618

                                                                        
Query: 241  gaactatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 gaactatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctg 1678

                        
Query: 301  cagcagtttgcg 312
            ||||||||||||
Sbjct: 1679 cagcagtttgcg 1690

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>emb|AJ534446.1|HVU534446 Hordeum vulgare mRNA for sugar transporter (stp2 gene)
          Length = 2516

 Score =  587 bits (296), Expect = e-165
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1    gggcaaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgat 60
            |||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 gggcgaaaagaaggtggcgcccagcgtatttacttgcatgaggagggtgtgtcaggtgat 1375

                                                                        
Query: 61   cggagaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 cggagaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatc 1435

                                                                        
Query: 121  caggcagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcag 180
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 caggcagccgctcttgtgagccaacctgctctttactcgaaggacctgatagagcagcag 1495

                                                                        
Query: 181  cttgctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 cttgctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggca 1555

                                                                        
Query: 241  gaactatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 gaactatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctg 1615

                        
Query: 301  cagcagtttgcg 312
            ||||||||||||
Sbjct: 1616 cagcagtttgcg 1627

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>ref|NM_197573.1| Oryza sativa (japonica cultivar-group) putative sugar transporter
            (OSJNBb0064P21.3), mRNA
          Length = 2438

 Score =  268 bits (135), Expect = 1e-68
 Identities = 264/307 (85%)
 Strand = Plus / Plus

                                                                        
Query: 5    aaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgatcgga 64
            ||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
Sbjct: 1471 aaaaagaaggtggcttccaacgtatctacttgcatgaagagggtgtgacaggtgatcgca 1530

                                                                        
Query: 65   gaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatccagg 124
            | ||||||||| ||||  |||| ||||||||| ||||||||||||||||||   ||||||
Sbjct: 1531 ggggctctatactgtcattgcctggaggtgatgttcctcctggtggtgagttcgtccagg 1590

                                                                        
Query: 125  cagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcagcttg 184
            |||| ||||| || |||||||||||||||||||| |||||  |||| ||||| |  ||||
Sbjct: 1591 cagctgctcttgtcagccaacctgctctttactctaaggaattgatggagcaacgccttg 1650

                                                                        
Query: 185  ctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaac 244
            |||| || || ||||| ||||||||  |||||||||| || ||| |||| ||||||||  
Sbjct: 1651 ctggccctgctatggtgcatccatctcaggcagttgctaaaggtccaaaatgggcagact 1710

                                                                        
Query: 245  tatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgcagc 304
            |||| |||||||||||||||||||| |||||||||||||| ||  |||| |||||||| |
Sbjct: 1711 tattcgaacctggagtgaagcatgctctgtttgttggcatagggatacaaatcctgcaac 1770

                   
Query: 305  agtttgc 311
            |||||||
Sbjct: 1771 agtttgc 1777

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>dbj|AK067391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106M11, full
           insert sequence
          Length = 1564

 Score =  268 bits (135), Expect = 1e-68
 Identities = 264/307 (85%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgatcgga 64
           ||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
Sbjct: 312 aaaaagaaggtggcttccaacgtatctacttgcatgaagagggtgtgacaggtgatcgca 371

                                                                       
Query: 65  gaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatccagg 124
           | ||||||||| ||||  |||| ||||||||| ||||||||||||||||||   ||||||
Sbjct: 372 ggggctctatactgtcattgcctggaggtgatgttcctcctggtggtgagttcgtccagg 431

                                                                       
Query: 125 cagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcagcttg 184
           |||| ||||| || |||||||||||||||||||| |||||  |||| ||||| |  ||||
Sbjct: 432 cagctgctcttgtcagccaacctgctctttactctaaggaattgatggagcaacgccttg 491

                                                                       
Query: 185 ctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaac 244
           |||| || || ||||| ||||||||  |||||||||| || ||| |||| ||||||||  
Sbjct: 492 ctggccctgctatggtgcatccatctcaggcagttgctaaaggtccaaaatgggcagact 551

                                                                       
Query: 245 tatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgcagc 304
           |||| |||||||||||||||||||| |||||||||||||| ||  |||| |||||||| |
Sbjct: 552 tattcgaacctggagtgaagcatgctctgtttgttggcatagggatacaaatcctgcaac 611

                  
Query: 305 agtttgc 311
           |||||||
Sbjct: 612 agtttgc 618

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>dbj|AK065191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002E10, full
            insert sequence
          Length = 2368

 Score =  268 bits (135), Expect = 1e-68
 Identities = 264/307 (85%)
 Strand = Plus / Plus

                                                                        
Query: 5    aaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgatcgga 64
            ||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
Sbjct: 1139 aaaaagaaggtggcttccaacgtatctacttgcatgaagagggtgtgacaggtgatcgca 1198

                                                                        
Query: 65   gaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatccagg 124
            | ||||||||| ||||  |||| ||||||||| ||||||||||||||||||   ||||||
Sbjct: 1199 ggggctctatactgtcattgcctggaggtgatgttcctcctggtggtgagttcgtccagg 1258

                                                                        
Query: 125  cagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcagcttg 184
            |||| ||||| || |||||||||||||||||||| |||||  |||| ||||| |  ||||
Sbjct: 1259 cagctgctcttgtcagccaacctgctctttactctaaggaattgatggagcaacgccttg 1318

                                                                        
Query: 185  ctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaac 244
            |||| || || ||||| ||||||||  |||||||||| || ||| |||| ||||||||  
Sbjct: 1319 ctggccctgctatggtgcatccatctcaggcagttgctaaaggtccaaaatgggcagact 1378

                                                                        
Query: 245  tatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgcagc 304
            |||| |||||||||||||||||||| |||||||||||||| ||  |||| |||||||| |
Sbjct: 1379 tattcgaacctggagtgaagcatgctctgtttgttggcatagggatacaaatcctgcaac 1438

                   
Query: 305  agtttgc 311
            |||||||
Sbjct: 1439 agtttgc 1445

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>dbj|AK102640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100A10, full
            insert sequence
          Length = 2800

 Score =  260 bits (131), Expect = 2e-66
 Identities = 263/307 (85%)
 Strand = Plus / Plus

                                                                        
Query: 5    aaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgatcgga 64
            ||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
Sbjct: 1502 aaaaagaaggtggcttccaacgtatctacttgcatgaagagggtgtgacaggtgatcgca 1561

                                                                        
Query: 65   gaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatccagg 124
            | ||||||||| ||||  |||| ||||||||| ||||||||||||||||||   ||||||
Sbjct: 1562 ggggctctatactgtcattgcctggaggtgatgttcctcctggtggtgagttcgtccagg 1621

                                                                        
Query: 125  cagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcagcttg 184
            |||| ||||| || |||||||||||||||||||| |||||  ||||  |||| |  ||||
Sbjct: 1622 cagctgctcttgtcagccaacctgctctttactctaaggaattgatgaagcaacgccttg 1681

                                                                        
Query: 185  ctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaac 244
            |||| || || ||||| ||||||||  |||||||||| || ||| |||| ||||||||  
Sbjct: 1682 ctggccctgctatggtgcatccatctcaggcagttgctaaaggtccaaaatgggcagact 1741

                                                                        
Query: 245  tatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgcagc 304
            |||| |||||||||||||||||||| |||||||||||||| ||  |||| |||||||| |
Sbjct: 1742 tattcgaacctggagtgaagcatgctctgtttgttggcatagggatacaaatcctgcaac 1801

                   
Query: 305  agtttgc 311
            |||||||
Sbjct: 1802 agtttgc 1808

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>gb|AC073166.7| Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence, complete
             sequence
          Length = 142114

 Score =  258 bits (130), Expect = 9e-66
 Identities = 256/298 (85%)
 Strand = Plus / Plus

                                                                         
Query: 5     aaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgatcgga 64
             ||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
Sbjct: 36628 aaaaagaaggtggcttccaacgtatctacttgcatgaagagggtgtgacaggtgatcgca 36687

                                                                         
Query: 65    gaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatccagg 124
             | ||||||||| ||||  |||| ||||||||| ||||||||||||||||||   ||||||
Sbjct: 36688 ggggctctatactgtcattgcctggaggtgatgttcctcctggtggtgagttcgtccagg 36747

                                                                         
Query: 125   cagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcagcttg 184
             |||| ||||| || |||||||||||||||||||| |||||  |||| ||||| |  ||||
Sbjct: 36748 cagctgctcttgtcagccaacctgctctttactctaaggaattgatggagcaacgccttg 36807

                                                                         
Query: 185   ctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaac 244
             |||| || || ||||| ||||||||  |||||||||| || ||| |||| ||||||||  
Sbjct: 36808 ctggccctgctatggtgcatccatctcaggcagttgctaaaggtccaaaatgggcagact 36867

                                                                       
Query: 245   tatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgca 302
             |||| |||||||||||||||||||| |||||||||||||| ||  |||| ||||||||
Sbjct: 36868 tattcgaacctggagtgaagcatgctctgtttgttggcatagggatacaaatcctgca 36925

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  258 bits (130), Expect = 9e-66
 Identities = 256/298 (85%)
 Strand = Plus / Plus

                                                                            
Query: 5        aaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgatcgga 64
                ||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
Sbjct: 20531338 aaaaagaaggtggcttccaacgtatctacttgcatgaagagggtgtgacaggtgatcgca 20531397

                                                                            
Query: 65       gaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatccagg 124
                | ||||||||| ||||  |||| ||||||||| ||||||||||||||||||   ||||||
Sbjct: 20531398 ggggctctatactgtcattgcctggaggtgatgttcctcctggtggtgagttcgtccagg 20531457

                                                                            
Query: 125      cagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcagcttg 184
                |||| ||||| || |||||||||||||||||||| |||||  |||| ||||| |  ||||
Sbjct: 20531458 cagctgctcttgtcagccaacctgctctttactctaaggaattgatggagcaacgccttg 20531517

                                                                            
Query: 185      ctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaac 244
                |||| || || ||||| ||||||||  |||||||||| || ||| |||| ||||||||  
Sbjct: 20531518 ctggccctgctatggtgcatccatctcaggcagttgctaaaggtccaaaatgggcagact 20531577

                                                                          
Query: 245      tatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgca 302
                |||| |||||||||||||||||||| |||||||||||||| ||  |||| ||||||||
Sbjct: 20531578 tattcgaacctggagtgaagcatgctctgtttgttggcatagggatacaaatcctgca 20531635

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  258 bits (130), Expect = 9e-66
 Identities = 256/298 (85%)
 Strand = Plus / Plus

                                                                            
Query: 5        aaaaagaaggtggcttccagcgtatttacttgcatgaggagggtgtgtcaggtgatcgga 64
                ||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
Sbjct: 20542610 aaaaagaaggtggcttccaacgtatctacttgcatgaagagggtgtgacaggtgatcgca 20542669

                                                                            
Query: 65       gaggctctatattgtctatgccaggaggtgatattcctcctggtggtgagtatatccagg 124
                | ||||||||| ||||  |||| ||||||||| ||||||||||||||||||   ||||||
Sbjct: 20542670 ggggctctatactgtcattgcctggaggtgatgttcctcctggtggtgagttcgtccagg 20542729

                                                                            
Query: 125      cagccgctctagtgagccaacctgctctttactcgaaggacctgatagagcagcagcttg 184
                |||| ||||| || |||||||||||||||||||| |||||  |||| ||||| |  ||||
Sbjct: 20542730 cagctgctcttgtcagccaacctgctctttactctaaggaattgatggagcaacgccttg 20542789

                                                                            
Query: 185      ctggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaac 244
                |||| || || ||||| ||||||||  |||||||||| || ||| |||| ||||||||  
Sbjct: 20542790 ctggccctgctatggtgcatccatctcaggcagttgctaaaggtccaaaatgggcagact 20542849

                                                                          
Query: 245      tatttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgca 302
                |||| |||||||||||||||||||| |||||||||||||| ||  |||| ||||||||
Sbjct: 20542850 tattcgaacctggagtgaagcatgctctgtttgttggcatagggatacaaatcctgca 20542907

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>gb|AY861386.1| Vitis vinifera hexose transporter 6 (HT6) mRNA, complete cds
          Length = 2437

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 115  tatatccaggcagccgctctagtgagccaacctgctctttactcgaagga 164
            ||||||||||| || ||||||||||| || |||||||||||||| |||||
Sbjct: 1564 tatatccaggctgctgctctagtgagtcagcctgctctttactctaagga 1613

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>gb|DQ017393.1| Vitis vinifera cultivar Syrah putative hexose transporter (HT6) mRNA,
            complete cds
          Length = 2521

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                              
Query: 115  tatatccaggcagccgctctagtgagccaacctgctctttactcgaagga 164
            ||||||||||| || ||||||||||| || |||||||||||||| |||||
Sbjct: 1538 tatatccaggctgctgctctagtgagtcagcctgctctttactctaagga 1587

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>ref|XM_464773.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2934

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                        
Query: 187  ggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaacta 246
            |||||||||||| | |||||||| ||||||| |||||| ||| |||  |||  |||  | 
Sbjct: 1781 ggtccagccatgattcatccatcagaggcagctgccaaaggttcaagctggaaagatttg 1840

                            
Query: 247  tttgaacctggagtga 262
            ||||||||||||||||
Sbjct: 1841 tttgaacctggagtga 1856

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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 89      gaggtgatattcctcctggtggtg 112
               ||||||||||||||||||||||||
Sbjct: 1346944 gaggtgatattcctcctggtggtg 1346967

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                           
Query: 187     ggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaacta 246
               |||||||||||| | |||||||| ||||||| |||||| ||| |||  |||  |||  | 
Sbjct: 7275966 ggtccagccatgattcatccatcagaggcagctgccaaaggttcaagctggaaagatttg 7276025

                               
Query: 247     tttgaacctggagtga 262
               ||||||||||||||||
Sbjct: 7276026 tttgaacctggagtga 7276041

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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                         
Query: 187   ggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaacta 246
             |||||||||||| | |||||||| ||||||| |||||| ||| |||  |||  |||  | 
Sbjct: 51774 ggtccagccatgattcatccatcagaggcagctgccaaaggttcaagctggaaagatttg 51833

                             
Query: 247   tttgaacctggagtga 262
             ||||||||||||||||
Sbjct: 51834 tttgaacctggagtga 51849

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>dbj|AK120560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132C18, full
            insert sequence
          Length = 2934

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 63/76 (82%)
 Strand = Plus / Plus

                                                                        
Query: 187  ggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaacta 246
            |||||||||||| | |||||||| ||||||| |||||| ||| |||  |||  |||  | 
Sbjct: 1780 ggtccagccatgattcatccatcagaggcagctgccaaaggttcaagctggaaagatttg 1839

                            
Query: 247  tttgaacctggagtga 262
            ||||||||||||||||
Sbjct: 1840 tttgaacctggagtga 1855

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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 89      gaggtgatattcctcctggtgg 110
               ||||||||||||||||||||||
Sbjct: 3085813 gaggtgatattcctcctggtgg 3085792

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>gb|BT009593.1| Triticum aestivum clone wre1n.pk0062.g6:fis, full insert mRNA
           sequence
          Length = 1315

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 99/125 (79%)
 Strand = Plus / Plus

                                                                       
Query: 187 ggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaacta 246
           |||||||||||| | |||||||  ||||||| | |||| ||| |||  |||  ||| || 
Sbjct: 119 ggtccagccatgattcatccattggaggcagctcccaaaggttcaatctggaaagatctg 178

                                                                       
Query: 247 tttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgcagcag 306
           ||||||||||| |||| || |||| |||| || ||  ||||| | ||||| || ||||||
Sbjct: 179 tttgaacctggtgtgaggcgtgcattgttcgtcggtgttggaattcagatgcttcagcag 238

                
Query: 307 tttgc 311
           |||||
Sbjct: 239 tttgc 243

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>emb|CR628406.8| Zebrafish DNA sequence from clone CH211-146A2 in linkage group 11,
             complete sequence
          Length = 145678

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    gaggagggtgtgtcaggtgat 60
             |||||||||||||||||||||
Sbjct: 65195 gaggagggtgtgtcaggtgat 65175

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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 5       aaaaagaaggtggcttccagc 25
               |||||||||||||||||||||
Sbjct: 1905855 aaaaagaaggtggcttccagc 1905835

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>gb|AY105508.1| Zea mays PCO114533 mRNA sequence
          Length = 2180

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                        
Query: 247  tttgaacctggagtgaagcatgcactgtttgttggcattggattacagatcctgcagcag 306
            |||||||||||||||| || ||| ||||| || ||  ||||| | |||||||| || |||
Sbjct: 1151 tttgaacctggagtgaggcgtgccctgttagtcggtgttggaattcagatccttcaacag 1210

                 
Query: 307  tttgc 311
            |||||
Sbjct: 1211 tttgc 1215

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       gggcaaaaagaaggtggctt 20
               ||||||||||||||||||||
Sbjct: 2426823 gggcaaaaagaaggtggctt 2426804

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>gb|AC144809.2| Mus musculus BAC clone RP24-391L5 from chromosome 9, complete sequence
          Length = 185599

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    acttgcatgaggagggtgtg 51
             ||||||||||||||||||||
Sbjct: 57062 acttgcatgaggagggtgtg 57043

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>emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on chromosome 3, complete
             sequence
          Length = 100991

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 247   tttgaacctggagtgaagcatgcactgtttgt 278
             |||||||| || |||||||||||| |||||||
Sbjct: 31205 tttgaaccgggggtgaagcatgcattgtttgt 31236

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>gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosome 9, complete sequence
          Length = 219833

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    acttgcatgaggagggtgtg 51
             ||||||||||||||||||||
Sbjct: 18365 acttgcatgaggagggtgtg 18384

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>emb|CR936365.7| Zebrafish DNA sequence from clone CH73-41C10 in linkage group 22,
              complete sequence
          Length = 133687

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     gaggagggtgtgtcaggtgatcgg 63
              |||||||||| |||||||||||||
Sbjct: 117761 gaggagggtgggtcaggtgatcgg 117784

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>gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete sequence
          Length = 100985

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 247   tttgaacctggagtgaagcatgcactgtttgt 278
             |||||||| || |||||||||||| |||||||
Sbjct: 31200 tttgaaccgggggtgaagcatgcattgtttgt 31231

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>emb|AL096799.6|HSJ764O22 Human DNA sequence from clone RP4-764O22 on chromosome 20 Contains the
             parts of two novel genes, complete sequence
          Length = 82812

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   tgagccaacctgctctttac 156
             ||||||||||||||||||||
Sbjct: 56493 tgagccaacctgctctttac 56474

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>emb|AL035415.22|HS705F19 Human DNA sequence from clone RP4-705F19 on chromosome 1p32.2-34.2
              Contains the 5' end of the SSBP3 gene for single stranded
              DNA binding protein 3, two novel genes and a CpG island,
              complete sequence
          Length = 136502

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    agagcagcagcttgctggtc 190
              ||||||||||||||||||||
Sbjct: 119044 agagcagcagcttgctggtc 119063

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>emb|BX511150.6| Zebrafish DNA sequence from clone CH211-234E22 in linkage group 14,
             complete sequence
          Length = 38668

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaggagggtgtgtcaggtgatcgg 63
             |||||||||||||||| |||||||
Sbjct: 18934 gaggagggtgtgtcagttgatcgg 18957

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>emb|CR847930.5| Zebrafish DNA sequence from clone DKEY-148H19 in linkage group 19,
              complete sequence
          Length = 167262

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     gaggagggtgtgtcaggtgatcgg 63
              |||||||||||||||| |||||||
Sbjct: 101304 gaggagggtgtgtcagttgatcgg 101327

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>emb|BX324131.6| Zebrafish DNA sequence from clone CH211-119E14 in linkage group 7,
              complete sequence
          Length = 198318

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    actcgaaggacctgatagag 174
              ||||||||||||||||||||
Sbjct: 145881 actcgaaggacctgatagag 145900

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>ref|XM_693966.1| PREDICTED: Danio rerio similar to deltex 4 homolog (LOC570481),
            partial mRNA
          Length = 1582

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  actcgaaggacctgatagag 174
            ||||||||||||||||||||
Sbjct: 995  actcgaaggacctgatagag 1014

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>emb|BX548049.9| Zebrafish DNA sequence from clone DKEY-217J16 in linkage group 25,
             complete sequence
          Length = 175348

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaggagggtgtgtcaggtgatcgg 63
             |||||||||||||||| |||||||
Sbjct: 66861 gaggagggtgtgtcagttgatcgg 66884

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>emb|BX005383.8| Zebrafish DNA sequence from clone DKEYP-19E1 in linkage group 25,
            complete sequence
          Length = 142728

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 40   gaggagggtgtgtcaggtgatcgg 63
            |||||||||||||||| |||||||
Sbjct: 9323 gaggagggtgtgtcagttgatcgg 9300

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>dbj|AK099716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013086B19, full
            insert sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                        
Query: 187  ggtccagccatggtacatccatccgaggcagttgccaagggtacaaagtgggcagaacta 246
            |||||||||||| | ||| |||| ||||||| |||||| ||| |||  |||  |||  | 
Sbjct: 1291 ggtccagccatgattcatacatcagaggcagctgccaaaggttcaagctggaaagatttg 1350

                            
Query: 247  tttgaacctggagtga 262
            ||||||||||||||||
Sbjct: 1351 tttgaacctggagtga 1366

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>emb|BX908392.13| Zebrafish DNA sequence from clone DKEY-192M14 in linkage group 22,
              complete sequence
          Length = 179577

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     gaggagggtgtgtcaggtgatcgg 63
              |||||||||| |||||||||||||
Sbjct: 144830 gaggagggtgggtcaggtgatcgg 144853

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>emb|BX537287.8| Zebrafish DNA sequence from clone CH211-206O8 in linkage group 19,
              complete sequence
          Length = 195505

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 40     gaggagggtgtgtcaggtgatcgg 63
              |||||||||||||||| |||||||
Sbjct: 116858 gaggagggtgtgtcagttgatcgg 116835

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>emb|AL935146.13| Zebrafish DNA sequence from clone CH211-171D11 in linkage group 22,
             complete sequence
          Length = 161161

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    gaggagggtgtgtcaggtgatcgg 63
             |||||||||| |||||||||||||
Sbjct: 59900 gaggagggtgggtcaggtgatcgg 59923

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>gb|AF005382.1|AF005382 Caldicellulosiruptor saccharolyticus putative xylose repressor (XylR)
            gene, partial cds, and xylanase (XynI) gene, complete cds
          Length = 2576

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  aaagtgggcagaactatttg 250
            ||||||||||||||||||||
Sbjct: 1165 aaagtgggcagaactatttg 1184


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,586,832
Number of Sequences: 3902068
Number of extensions: 2586832
Number of successful extensions: 40213
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40106
Number of HSP's gapped (non-prelim): 102
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result