ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26e15 |
|---|---|
| Clone Library Name | barley_pub |
>PUM_DROME (P25822) Maternal protein pumilio| Length = 1533 Score = 84.3 bits (207), Expect = 1e-16 Identities = 50/127 (39%), Positives = 65/127 (51%) Frame = +1 Query: 97 PLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQREREKFDSPKACTFL 276 PL P + + + + R A A+ A G G + P L Sbjct: 1043 PLAIPGTAAVAAAAAAAAAANSRQVAATAAAAAAVAAAAGGVGGAPQ------PGRSRLL 1096 Query: 277 EELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLM 456 E+ ++ R ++L D+ IV+FS DQHGSRFIQQKLE TA EK VF+E+L A SLM Sbjct: 1097 EDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLM 1156 Query: 457 TDVXGNY 477 TDV GNY Sbjct: 1157 TDVFGNY 1163 Score = 42.7 bits (99), Expect = 5e-04 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +1 Query: 328 GRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 G++ S +G R IQ+ LE+CTAE+ + E+ H L+ D GNY Sbjct: 1258 GQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNY 1307
>PUM2_MOUSE (Q80U58) Pumilio homolog 2| Length = 1066 Score = 80.1 bits (196), Expect = 3e-15 Identities = 39/68 (57%), Positives = 48/68 (70%) Frame = +1 Query: 274 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSL 453 LE+ ++NR ++L D+ G IV+FS DQHGSRFIQQKLE T E+ VF E+L A L Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQL 770 Query: 454 MTDVXGNY 477 MTDV GNY Sbjct: 771 MTDVFGNY 778 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +1 Query: 328 GRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 G++ S +G R IQ+ LE+CTAE+ + E+ H L+ D GNY Sbjct: 875 GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNY 924
>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)| Length = 1066 Score = 80.1 bits (196), Expect = 3e-15 Identities = 39/68 (57%), Positives = 48/68 (70%) Frame = +1 Query: 274 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSL 453 LE+ ++NR ++L D+ G IV+FS DQHGSRFIQQKLE T E+ VF E+L A L Sbjct: 711 LEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQL 770 Query: 454 MTDVXGNY 477 MTDV GNY Sbjct: 771 MTDVFGNY 778 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +1 Query: 328 GRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 G++ S +G R IQ+ LE+CTAE+ + E+ H L+ D GNY Sbjct: 875 GQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNY 924
>PUM1_MOUSE (Q80U78) Pumilio homolog 1| Length = 1189 Score = 75.9 bits (185), Expect = 5e-14 Identities = 37/68 (54%), Positives = 47/68 (69%) Frame = +1 Query: 274 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSL 453 LE+ ++NR ++L +I G I++FS DQHGSRFIQ KLE TA E+ VF E+L A L Sbjct: 834 LEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQL 893 Query: 454 MTDVXGNY 477 M DV GNY Sbjct: 894 MVDVFGNY 901 Score = 36.6 bits (83), Expect = 0.035 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +1 Query: 328 GRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 G++ S +G R IQ+ LE+C ++ + E+ H L+ D GNY Sbjct: 998 GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNY 1047
>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)| Length = 1186 Score = 73.9 bits (180), Expect = 2e-13 Identities = 36/68 (52%), Positives = 46/68 (67%) Frame = +1 Query: 274 LEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSL 453 LE+ ++NR ++L +I G I++FS DQHGSRFIQ KLE T E+ VF E+L A L Sbjct: 833 LEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQL 892 Query: 454 MTDVXGNY 477 M DV GNY Sbjct: 893 MVDVFGNY 900 Score = 36.6 bits (83), Expect = 0.035 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +1 Query: 328 GRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 G++ S +G R IQ+ LE+C ++ + E+ H L+ D GNY Sbjct: 995 GQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNY 1044
>PUF3_YEAST (Q07807) Protein PUF3| Length = 879 Score = 57.4 bits (137), Expect = 2e-08 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 5/73 (6%) Frame = +1 Query: 274 LEELKS-----NRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLP 438 LE+L++ N + L DI G ++F DQHGSRFIQ++L A EK +F E+ Sbjct: 518 LEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRD 577 Query: 439 HASSLMTDVXGNY 477 A L DV GNY Sbjct: 578 DAIELSNDVFGNY 590
>YDHE_SCHPO (Q92359) Hypothetical protein C6G9.14 in chromosome I| Length = 681 Score = 46.2 bits (108), Expect = 4e-05 Identities = 24/55 (43%), Positives = 30/55 (54%) Frame = +1 Query: 313 LSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 LS I+ F DQHG R++Q+ LE AVFAE P+ + LM D GNY Sbjct: 341 LSLQNSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNY 395 Score = 32.7 bits (73), Expect = 0.51 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +1 Query: 337 VDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 +D S +HG +Q+ ++ + + + ++PHA +L+ D GNY Sbjct: 494 LDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAFGNY 540
>PUF4_YEAST (P25339) Protein PUF4| Length = 888 Score = 43.9 bits (102), Expect = 2e-04 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +1 Query: 286 KSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDV 465 +S+R L G I DQHG RF+Q++L+ ++ A+F E + LMTD Sbjct: 552 ESSRFADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDS 611 Query: 466 XGNY 477 GNY Sbjct: 612 FGNY 615
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 39.7 bits (91), Expect = 0.004 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 18/111 (16%) Frame = +1 Query: 88 VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSG---------------- 219 +G PL P QG P G P+ +PA F P NM + G Sbjct: 327 LGPPLGLAPPPHMQGPPPGGPPPAPHVNPAFFPPPGNNMPSSDGRGPPPGDPYGRPPPYD 386 Query: 220 --FQGQREREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 366 F G R+ + +P + EE+ NR R + S I+ + D SA +GS Sbjct: 387 RDFPGGRDMDASRTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAADYGS 436
>MPT5_YEAST (P39016) Suppressor protein MPT5 (Protein HTR1)| Length = 834 Score = 33.9 bits (76), Expect = 0.23 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Frame = +1 Query: 289 SNRARRVELSDITGRIVDF---SADQHGSRFIQQKLENCTAEE--KAAVFAEVLPHASSL 453 S + VE+S + R +D+ + DQ G RF+Q+KLE + + ++ ++ P L Sbjct: 172 STSSSMVEISALPLRDLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDL 231 Query: 454 MTDVXGNY 477 + D GNY Sbjct: 232 ILDPFGNY 239 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 334 IVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 I+ S +HG +Q+ L CT ++ + +++ L+ D GNY Sbjct: 345 IITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNY 392
>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor| Length = 838 Score = 33.5 bits (75), Expect = 0.30 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +1 Query: 82 PYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQR 234 P G P YPTSP+ GQ G P+ P + Q + G QGQ+ Sbjct: 521 PGQGQPGYYPTSPLQPGQGQPGYDPTSPQQPGQGQQPGQLQQPAQGQQGQQ 571 Score = 32.0 bits (71), Expect = 0.87 Identities = 18/57 (31%), Positives = 24/57 (42%) Frame = +1 Query: 73 GISPYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQRERE 243 G P G P YPTSP GQ G P+ P + Q + QGQ+ ++ Sbjct: 356 GQQPGQGQPGYYPTSPQQSGQGQPGYYPTSSQQPTQSQQPGQGQQGQQVGQGQQAQQ 412
>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor| Length = 839 Score = 33.5 bits (75), Expect = 0.30 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +1 Query: 82 PYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQR 234 P G P YPTSP+ GQ G P+ P + Q + G QGQ+ Sbjct: 516 PGQGQPGYYPTSPLQPGQGQPGYDPTSPQQPGQGQQPGQLQQPAQGQQGQQ 566 Score = 32.0 bits (71), Expect = 0.87 Identities = 18/57 (31%), Positives = 24/57 (42%) Frame = +1 Query: 73 GISPYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQRERE 243 G P G P YPTSP GQ G P+ P + Q + QGQ+ ++ Sbjct: 351 GQQPGQGQPGYYPTSPQQSGQGQPGYYPTSSQQPTQSQQPGQGQQGQQVGQGQQAQQ 407
>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1| transcriptional activation subunit 2) (Transcriptional coactivator CRSP150) (Vitamin D3 receptor-interacting protein complex 150 kDa component) (DRIP150) (Thyroid hormone receptor-ass Length = 1454 Score = 32.7 bits (73), Expect = 0.51 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 Query: 25 AVPPLSVVGETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGR 165 A P S V P+ HGIS GA P + P++ +SPSGR Sbjct: 1059 APSPASFVPTPPPSSHGISIGPGASFASPHGTLDPSSPYTMVSPSGR 1105
>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1612 Score = 32.7 bits (73), Expect = 0.51 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Frame = +1 Query: 10 SPYVGAVPPLSVVGETVPNYHGISPY------VGAPLTYPTSPVFQGQ--PFSGISPSGR 165 SP GA+PPL+ T + SP G P YP + G P SG SP G Sbjct: 64 SPLPGALPPLNGGAPTPAHPSDPSPQYQAHSAAGTP-QYPLPRPYSGSLLPASGTSPYGP 122 Query: 166 NDPARFQPASR 198 + P+ P+SR Sbjct: 123 STPSHAHPSSR 133
>YAD3_SCHPO (Q09829) Hypothetical protein C4G8.03c in chromosome I| Length = 780 Score = 31.6 bits (70), Expect = 1.1 Identities = 18/64 (28%), Positives = 27/64 (42%) Frame = +1 Query: 286 KSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDV 465 KS + L G + DQ+G R++Q+ L+ + F E+ LM D Sbjct: 451 KSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDP 510 Query: 466 XGNY 477 GNY Sbjct: 511 FGNY 514
>FZD7_MOUSE (Q61090) Frizzled 7 precursor (Frizzled-7) (Fz-7) (mFz7)| Length = 572 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/59 (28%), Positives = 24/59 (40%) Frame = +1 Query: 91 GAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQREREKFDSPKAC 267 G+P YPT+P PF+ +SPS F + V + G R + D C Sbjct: 174 GSPTAYPTAPYLPDPPFTAMSPSDGRGRLSFPFSCPRQLKVPPYLGYRFLGERDCGAPC 232
>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 730 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 Query: 49 GETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGRND 171 G +P Y+G S GAP +P + F+G+ +S + GRND Sbjct: 215 GVVIPTYYGNSN--GAPCHFPFT--FEGRSYSACTTDGRND 251
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 30.4 bits (67), Expect = 2.5 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 21/114 (18%) Frame = +1 Query: 88 VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQ------------ 231 +G PLT P G P P+ +PA F P + + S +G Sbjct: 331 LGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPY 390 Query: 232 ---------REREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 366 RE + +P + EE+ NR R + S I+ + D SA +GS Sbjct: 391 DRGDYGPPGREMDTARTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAGDYGS 443
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 30.4 bits (67), Expect = 2.5 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 21/114 (18%) Frame = +1 Query: 88 VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQ------------ 231 +G PLT P G P P+ +PA F P + + S +G Sbjct: 331 LGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPY 390 Query: 232 ---------REREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 366 RE + +P + EE+ NR R + S I+ + D SA +GS Sbjct: 391 DRGDYGPPGREMDTARTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAGDYGS 443
>CPSF6_CHICK (Q5ZL34) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 30.4 bits (67), Expect = 2.5 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 21/114 (18%) Frame = +1 Query: 88 VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQ------------ 231 +G PLT P G P P+ +PA F P + + S +G Sbjct: 331 LGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPANSGIPTSDSRGPPPTDPYGRPPPY 390 Query: 232 ---------REREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 366 RE + +P + EE+ NR R + S I+ + D SA +GS Sbjct: 391 DRGDYGPPGREMDAARTPLSEAEFEEI-MNRNRAISSSAISRAVSDASAGDYGS 443
>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor (NIF domain protein 3) Length = 409 Score = 30.4 bits (67), Expect = 2.5 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%) Frame = +1 Query: 166 NDPARFQPASRNMTAVSGFQGQREREKFDSPKACTFLEELKSNRA---RRV--ELSDITG 330 +DPA +Q N V+ F R+R+ + FL+ L S R R+V E D G Sbjct: 268 DDPAAYQLQPENAIPVTPFTNGRDRDDHELKDLIPFLKALASERVPDFRQVIGEFRDEDG 327 Query: 331 RIVDFSADQHGSRFIQQKLENCTAEEK 411 + D A ++G+R Q +++ ++K Sbjct: 328 VVRDL-ATKYGARVHQLEMQKEQKKKK 353
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 30.4 bits (67), Expect = 2.5 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Frame = +1 Query: 4 GISPYVGAVPPLSVVGETVPNYHGISPYVGAPLTY----------PTSPVFQGQPFSGIS 153 G P++G PP+ + P+ G P VG P P PV G P GI+ Sbjct: 176 GPHPHMGGPPPMRGMSPMHPHQMGPGPGVGLPPHMNHGRPGGPGGPGGPVPMGSPMGGIA 235 Query: 154 PSGRNDP 174 G P Sbjct: 236 GMGGMSP 242
>YD15_SCHPO (Q10238) Putative regulatory protein C4G9.05| Length = 581 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +1 Query: 343 FSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 F DQ S +QQ+L+N E+ + +LP + +LM + GN+ Sbjct: 263 FQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNF 307
>Y2320_MYCBO (P63485) Hypothetical protein Mb2320| Length = 323 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -1 Query: 329 PVISDSSTLRALLDLSSSRKVHAFGLSNFSLSR 231 PV+ DS + + DL S + A G+SN+SL+R Sbjct: 121 PVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLAR 153
>Y2298_MYCTU (P63484) Hypothetical protein Rv2298/MT2355| Length = 323 Score = 30.0 bits (66), Expect = 3.3 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -1 Query: 329 PVISDSSTLRALLDLSSSRKVHAFGLSNFSLSR 231 PV+ DS + + DL S + A G+SN+SL+R Sbjct: 121 PVVPDSVIMPGMRDLLDSGDIGAAGVSNYSLAR 153
>MCP2_SCHPO (O74438) Meiotic coiled-coil protein 2| Length = 703 Score = 30.0 bits (66), Expect = 3.3 Identities = 12/52 (23%), Positives = 25/52 (48%) Frame = +1 Query: 322 ITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLMTDVXGNY 477 + G+ + + ++GS +Q ENC ++K E++ H + GN+ Sbjct: 510 LRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNW 561
>WRT1_CAEEL (Q94128) Warthog protein 1 precursor [Contains: Warthog protein 1| N-product; Warthog protein 1 C-product] Length = 485 Score = 30.0 bits (66), Expect = 3.3 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Frame = +1 Query: 118 PVFQGQP--FSG----ISPSGRNDPARFQPASRNMTAVSGFQGQREREKFDSPKACTFLE 279 PV G P F+G ++P+G A MT G K + ++L Sbjct: 283 PVASGVPACFTGNSKVMTPAGEKSMADLSVGDMVMTYEYG--------KMTYTRVASWLH 334 Query: 280 ELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAAVFAEVLPHASSLM 456 L +A ++L+ G I+D + QH FI + NC EE V+AE + LM Sbjct: 335 RLPDTKAAFIKLTTEQGAIIDMTP-QH---FIYKA--NCVTEEMELVYAEDMTIGDCLM 387
>ADCY3_RAT (P21932) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase| type III) (Adenylate cyclase, olfactive type) (ATP pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III) (AC3) Length = 1144 Score = 30.0 bits (66), Expect = 3.3 Identities = 29/123 (23%), Positives = 48/123 (39%) Frame = +1 Query: 49 GETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQG 228 G +PN GAP + P+SP P+G S + + + + Sbjct: 509 GSALPN--------GAPASKPSSPAL----IETKEPNG----------SAHASGSTSEEA 546 Query: 229 QREREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEE 408 + + + D+P N RR+ L D+ R+VD S D+H + Q L E Sbjct: 547 EEQEAQADNPSF--------PNPRRRLRLQDLADRVVDASEDEHE---LNQLLNEALLER 595 Query: 409 KAA 417 ++A Sbjct: 596 ESA 598
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +1 Query: 7 ISPYVGAVPPLSV-VGETVPNYHGISP-------YVGAPLTYPTSPVFQGQPFSGISPSG 162 +SPY A P +S T PNY SP +P PTSP++ ++ +P+ Sbjct: 1565 MSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNF 1624 Query: 163 RNDPARFQPASRNMTAVS 216 + P+S + S Sbjct: 1625 NPQSTGYSPSSSGYSPTS 1642
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 29.3 bits (64), Expect = 5.6 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Frame = +1 Query: 16 YVGAVPPLSVVGETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGRND--PARFQP 189 Y PP G T P Y G SP G P SP P PSG P P Sbjct: 652 YKPGSPPSFRTG-TPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAP 710 Query: 190 ASRNMTAVSGFQGQREREKFDSPKA 264 AS + + + Q E++++P++ Sbjct: 711 ASGPPLSATQIK-QEPAEEYETPES 734
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 29.3 bits (64), Expect = 5.6 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Frame = +1 Query: 16 YVGAVPPLSVVGETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGRND--PARFQP 189 Y PP G T P Y G SP G P SP P PSG P P Sbjct: 653 YKPGSPPSFRTG-TPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSGLPSLPPPPAAP 711 Query: 190 ASRNMTAVSGFQGQREREKFDSPKA 264 AS + + + Q E++++P++ Sbjct: 712 ASGPPLSATQIK-QEPAEEYETPES 735
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = +1 Query: 58 VPNY-HGISPYVGAPLTYPTSPVFQGQPFSGISP 156 +P Y H PYVG P YP P G + G P Sbjct: 68 IPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGP 101
>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6| Length = 552 Score = 28.9 bits (63), Expect = 7.3 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 21/114 (18%) Frame = +1 Query: 88 VGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQPASRNMTAVSGFQGQ------------ 231 +G PLT P G P P+ +PA F P + + S +G Sbjct: 331 LGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPY 390 Query: 232 ---------REREKFDSPKACTFLEELKSNRARRVELSDITGRIVDFSADQHGS 366 RE + +P + EE+ NR R + S I+ + D S +GS Sbjct: 391 DRGDYGPPGREMDTARTPLSEAEFEEI-MNRNRAISSSAISRAVSDASVGDYGS 443
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 28.9 bits (63), Expect = 7.3 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 6/89 (6%) Frame = +1 Query: 7 ISPYVGAVPPLSVVGETVPNYHGISPYVGAPLTYPTSPVFQGQPFSGISPSGRNDPARFQ 186 +SP + L G T + SP P + +SP + P SPSG + P Sbjct: 2822 LSPNHNTLQTLKSDGRTSSGFRAESP---GPGSRSSSPKPKPLPTPRSSPSGASSPRSSS 2878 Query: 187 PASRNM------TAVSGFQGQREREKFDS 255 P +N+ A + RER K DS Sbjct: 2879 PQDKNLPQKSTAPAKTKLDPPRERSKSDS 2907
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 28.9 bits (63), Expect = 7.3 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = +1 Query: 58 VPNY-HGISPYVGAPLTYPTSPVFQGQPFSGISP 156 +P Y H PYVG P YP P G + G P Sbjct: 68 IPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGP 101
>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)| Length = 2567 Score = 28.5 bits (62), Expect = 9.6 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = +1 Query: 163 RNDPARFQPASRNMTAVSGFQGQREREKFDSPKAC--TFLEELKSNRARR 306 R R +PAS + + S REK SP A F+E L+ RA+R Sbjct: 2215 RKSTERLEPASSPLASRSTNTSPLSREKLPSPSAALSEFVEGLRRKRAQR 2264
>FZD7_HUMAN (O75084) Frizzled 7 precursor (Frizzled-7) (Fz-7) (hFz7) (FzE3)| Length = 574 Score = 28.5 bits (62), Expect = 9.6 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Frame = +1 Query: 91 GAPLTYPTSPVFQGQPFSGISP---SGRNDPA 177 G P YPT+P PF+ + P GR PA Sbjct: 174 GGPTAYPTAPYLPDLPFTALPPGASDGRGRPA 205
>ADCY3_MOUSE (Q8VHH7) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase| type III) (Adenylate cyclase, olfactive type) (ATP pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III) (AC3) Length = 1145 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 292 NRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAA 417 N RR+ L D+ R+VD S D+H + Q L E ++A Sbjct: 561 NPRRRLRLQDLADRVVDASEDEHE---LNQLLNEALLERESA 599
>R3HD2_MOUSE (Q80TM6) R3H domain-containing protein 2| Length = 1044 Score = 28.5 bits (62), Expect = 9.6 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Frame = +1 Query: 4 GISPYVGAVPPLSVVGETVPNYHGISP-----YVGAPLTYPTSPVFQGQPFSGISPSG 162 G+ Y +PP G T P+ + P Y P SP Q +SG+SPSG Sbjct: 714 GVPVYYSMIPPAQQNG-TSPSVGFLQPPGSEQYQMPQSPSPCSPPQMSQQYSGVSPSG 770
>SYL_BACSK (Q5WE05) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 804 Score = 28.5 bits (62), Expect = 9.6 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 Query: 168 ISARGGNSRERLPLKHWACRIS 103 +S RGG+ ER P+K W RI+ Sbjct: 174 VSERGGHPVERRPMKQWVLRIT 195
>OSBL6_HUMAN (Q9BZF3) Oxysterol-binding protein-related protein 6 (OSBP-related| protein 6) (ORP-6) Length = 934 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 473 FPNTSVIKDEA*GRTSANTAAFSSAVQFSNFCWMKRLPCWSALKST 336 FP+TS + +AN + +Q ++F W LPC ++L +T Sbjct: 199 FPSTSTAESSP----AANVSVMDGKMQPNSFPWQSPLPCSNSLPAT 240
>IPO7_MOUSE (Q9EPL8) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 28.5 bits (62), Expect = 9.6 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%) Frame = +2 Query: 131 GNLSLEFPPLAEMILQGFSQPREI*LLFLGFKGSEKGR----------NLIAR--RHALS 274 GN+S E+ AE+ L+ F+ + LL + ++ EK N I + HAL+ Sbjct: 279 GNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALT 338 Query: 275 WKNLSP 292 WKNL P Sbjct: 339 WKNLKP 344
>IPO7_HUMAN (O95373) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)| Length = 1038 Score = 28.5 bits (62), Expect = 9.6 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%) Frame = +2 Query: 131 GNLSLEFPPLAEMILQGFSQPREI*LLFLGFKGSEKGR----------NLIAR--RHALS 274 GN+S E+ AE+ L+ F+ + LL + ++ EK N I + HAL+ Sbjct: 279 GNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALT 338 Query: 275 WKNLSP 292 WKNL P Sbjct: 339 WKNLKP 344
>ADCY3_HUMAN (O60266) Adenylate cyclase type 3 (EC 4.6.1.1) (Adenylate cyclase| type III) (Adenylate cyclase, olfactive type) (ATP pyrophosphate-lyase 3) (Adenylyl cyclase 3) (AC-III) (AC3) Length = 1144 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 292 NRARRVELSDITGRIVDFSADQHGSRFIQQKLENCTAEEKAA 417 N RR+ L D+ R+VD S D+H + Q L E ++A Sbjct: 562 NPRRRLRLQDLADRVVDASEDEHE---LNQLLNEALLERESA 600 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,827,972 Number of Sequences: 219361 Number of extensions: 1510510 Number of successful extensions: 4360 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 4201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4355 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
