ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25p02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475203.1| Oryza sativa (japonica cultivar-group), predic... 553 e-154
2dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clon... 553 e-154
3gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 202 9e-49
4gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 202 9e-49
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 202 9e-49
6ref|NM_128710.2| Arabidopsis thaliana EMB2289; protein transloca... 68 3e-08
7emb|BX820289.1|CNS0A8QZ Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
8ref|XM_368718.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 44 0.50
9gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Canc... 44 0.50
10gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, com... 42 2.0
11gb|AC110980.6| Rattus norvegicus 4 BAC CH230-94D15 (Children's H... 40 7.7
12emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch... 40 7.7
13gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome... 40 7.7
14emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chro... 40 7.7
15gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map ... 40 7.7
16gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, com... 40 7.7
17gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, com... 40 7.7
18dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 7.7
19gb|AY062590.1| Arabidopsis thaliana putative preprotein transloc... 40 7.7
20dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.7
21dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.7
22gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complet... 40 7.7
23dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.7

>ref|XM_475203.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score =  553 bits (279), Expect = e-154
 Identities = 497/570 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
           ||||||||| ||||||||||||||| |||||||||  ||  ||||||||||||| || ||
Sbjct: 297 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 356

                                                                       
Query: 61  gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
            |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 357 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 416

                                                                       
Query: 121 gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
           |||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 417 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 476

                                                                       
Query: 181 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
           |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 477 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 536

                                                                       
Query: 241 cagtcatcagatatcagcatcgattgtgatgcaggttctttgccatgttcttccatcact 300
           |||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||||||
Sbjct: 537 cagtcatcagatttcagcatctattgtcatgcaggttctctgtcatgttcttccatcact 596

                                                                       
Query: 301 tgaaaagattcgcaaggaaggattagacgggcatgagaagatcaaaagctatatatggtg 360
           ||||||  | || |||||||| ||||| || ||||||||||||||| ||||||| |||||
Sbjct: 597 tgaaaaactacgaaaggaagggttagatggacatgagaagatcaaaggctatatttggtg 656

                                                                       
Query: 361 gctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctgcagta 420
           ||| || |||||||||||| ||||||| |||| ||| ||||||||||| || ||||| ||
Sbjct: 657 gctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactgcaata 716

                                                                       
Query: 421 ctccatatatgcagcaagttacagggttaagcatgtcatattaacaagctttctgcttgt 480
            || |||||||| ||||||||||| ||||||||||| ||  |||||||| || | |||||
Sbjct: 717 ttctatatatgctgcaagttacagagttaagcatgtaatgataacaagccttttccttgt 776

                                                                       
Query: 481 cctcggtgcaatgtcaacgacttggatctgtgacaccataacggaatctggctttgggca 540
            || ||||||||| ||| ||| |||||||||||||| ||| |||||||||| ||||| ||
Sbjct: 777 tcttggtgcaatgacaatgacatggatctgtgacactatatcggaatctggatttggaca 836

                                         
Query: 541 tggctcatctttgattatctgtgttggaat 570
           |||||| || |||||||||||||| |||||
Sbjct: 837 tggctcttccttgattatctgtgtgggaat 866



to top

>dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106K06, full
           insert sequence
          Length = 2452

 Score =  553 bits (279), Expect = e-154
 Identities = 497/570 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
           ||||||||| ||||||||||||||| |||||||||  ||  ||||||||||||| || ||
Sbjct: 371 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 430

                                                                       
Query: 61  gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
            |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 431 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 490

                                                                       
Query: 121 gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
           |||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 491 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 550

                                                                       
Query: 181 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
           |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 551 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 610

                                                                       
Query: 241 cagtcatcagatatcagcatcgattgtgatgcaggttctttgccatgttcttccatcact 300
           |||||||||||| |||||||| ||||| ||||||||||| || |||||||||||||||||
Sbjct: 611 cagtcatcagatttcagcatctattgtcatgcaggttctctgtcatgttcttccatcact 670

                                                                       
Query: 301 tgaaaagattcgcaaggaaggattagacgggcatgagaagatcaaaagctatatatggtg 360
           ||||||  | || |||||||| ||||| || ||||||||||||||| ||||||| |||||
Sbjct: 671 tgaaaaactacgaaaggaagggttagatggacatgagaagatcaaaggctatatttggtg 730

                                                                       
Query: 361 gctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctgcagta 420
           ||| || |||||||||||| ||||||| |||| ||| ||||||||||| || ||||| ||
Sbjct: 731 gctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactgcaata 790

                                                                       
Query: 421 ctccatatatgcagcaagttacagggttaagcatgtcatattaacaagctttctgcttgt 480
            || |||||||| ||||||||||| ||||||||||| ||  |||||||| || | |||||
Sbjct: 791 ttctatatatgctgcaagttacagagttaagcatgtaatgataacaagccttttccttgt 850

                                                                       
Query: 481 cctcggtgcaatgtcaacgacttggatctgtgacaccataacggaatctggctttgggca 540
            || ||||||||| ||| ||| |||||||||||||| ||| |||||||||| ||||| ||
Sbjct: 851 tcttggtgcaatgacaatgacatggatctgtgacactatatcggaatctggatttggaca 910

                                         
Query: 541 tggctcatctttgattatctgtgttggaat 570
           |||||| || |||||||||||||| |||||
Sbjct: 911 tggctcttccttgattatctgtgtgggaat 940



to top

>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
             complete sequence
          Length = 146303

 Score =  202 bits (102), Expect = 9e-49
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                         
Query: 1     ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
             ||||||||| ||||||||||||||| |||||||||  ||  ||||||||||||| || ||
Sbjct: 12847 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 12788

                                                                         
Query: 61    gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
              |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 12787 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 12728

                                                                         
Query: 121   gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
             |||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 12727 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 12668

                  
Query: 181   tgcag 185
             |||||
Sbjct: 12667 tgcag 12663



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                         
Query: 181   tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
             |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 12532 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 12473

                                                    
Query: 241   cagtcatcagatatcagcatcgattgtgatgcaggttct 279
             |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 12472 cagtcatcagatttcagcatctattgtcatgcaggttct 12434



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                         
Query: 273   aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 332
             ||||||| || |||||||||||||||||||||||  | || |||||||| ||||| || |
Sbjct: 12214 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 12155

                                   
Query: 333   atgagaagatcaaaagctatat 354
             |||||||||||||| |||||||
Sbjct: 12154 atgagaagatcaaaggctatat 12133



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                         
Query: 356   tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 415
             |||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 12019 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 11960

                                           
Query: 416   cagtactccatatatgcagcaagttacagg 445
             || || || |||||||| ||||||||||||
Sbjct: 11959 caatattctatatatgctgcaagttacagg 11930



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                         
Query: 446   gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 505
             ||||||||||| ||  |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 11817 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 11758

                                             
Query: 506   atctgtgacaccataacggaatctggctttgg 537
             ||||||||||| ||| |||||||||| |||||
Sbjct: 11757 atctgtgacactatatcggaatctggatttgg 11726



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 539   catggctcatctttgattatctgtgttggaat 570
             |||||||| || |||||||||||||| |||||
Sbjct: 11400 catggctcttccttgattatctgtgtgggaat 11369



to top

>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score =  202 bits (102), Expect = 9e-49
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                          
Query: 1      ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
              ||||||||| ||||||||||||||| |||||||||  ||  ||||||||||||| || ||
Sbjct: 130669 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 130610

                                                                          
Query: 61     gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
               |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 130609 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 130550

                                                                          
Query: 121    gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
              |||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 130549 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 130490

                   
Query: 181    tgcag 185
              |||||
Sbjct: 130489 tgcag 130485



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                          
Query: 181    tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
              |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 130354 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 130295

                                                     
Query: 241    cagtcatcagatatcagcatcgattgtgatgcaggttct 279
              |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 130294 cagtcatcagatttcagcatctattgtcatgcaggttct 130256



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                          
Query: 273    aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 332
              ||||||| || |||||||||||||||||||||||  | || |||||||| ||||| || |
Sbjct: 130036 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 129977

                                    
Query: 333    atgagaagatcaaaagctatat 354
              |||||||||||||| |||||||
Sbjct: 129976 atgagaagatcaaaggctatat 129955



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                          
Query: 356    tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 415
              |||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 129841 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 129782

                                            
Query: 416    cagtactccatatatgcagcaagttacagg 445
              || || || |||||||| ||||||||||||
Sbjct: 129781 caatattctatatatgctgcaagttacagg 129752



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                          
Query: 446    gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 505
              ||||||||||| ||  |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 129639 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 129580

                                              
Query: 506    atctgtgacaccataacggaatctggctttgg 537
              ||||||||||| ||| |||||||||| |||||
Sbjct: 129579 atctgtgacactatatcggaatctggatttgg 129548



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 539    catggctcatctttgattatctgtgttggaat 570
              |||||||| || |||||||||||||| |||||
Sbjct: 129222 catggctcttccttgattatctgtgtgggaat 129191



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  202 bits (102), Expect = 9e-49
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1        ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
                ||||||||| ||||||||||||||| |||||||||  ||  ||||||||||||| || ||
Sbjct: 19208771 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 19208712

                                                                            
Query: 61       gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
                 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 19208711 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 19208652

                                                                            
Query: 121      gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
                |||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 19208651 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 19208592

                     
Query: 181      tgcag 185
                |||||
Sbjct: 19208591 tgcag 19208587



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                            
Query: 181      tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
                |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 19208456 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 19208397

                                                       
Query: 241      cagtcatcagatatcagcatcgattgtgatgcaggttct 279
                |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 19208396 cagtcatcagatttcagcatctattgtcatgcaggttct 19208358



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 273      aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 332
                ||||||| || |||||||||||||||||||||||  | || |||||||| ||||| || |
Sbjct: 19208138 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 19208079

                                      
Query: 333      atgagaagatcaaaagctatat 354
                |||||||||||||| |||||||
Sbjct: 19208078 atgagaagatcaaaggctatat 19208057



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                            
Query: 356      tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 415
                |||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 19207943 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 19207884

                                              
Query: 416      cagtactccatatatgcagcaagttacagg 445
                || || || |||||||| ||||||||||||
Sbjct: 19207883 caatattctatatatgctgcaagttacagg 19207854



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                            
Query: 446      gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 505
                ||||||||||| ||  |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 19207741 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 19207682

                                                
Query: 506      atctgtgacaccataacggaatctggctttgg 537
                ||||||||||| ||| |||||||||| |||||
Sbjct: 19207681 atctgtgacactatatcggaatctggatttgg 19207650



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 539      catggctcatctttgattatctgtgttggaat 570
                |||||||| || |||||||||||||| |||||
Sbjct: 19207324 catggctcttccttgattatctgtgtgggaat 19207293



to top

>ref|NM_128710.2| Arabidopsis thaliana EMB2289; protein translocase AT2G31530
           (EMB2289) mRNA, complete cds
          Length = 1827

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 485 ggtgcaatgtcaacgacttggatctgtgacaccataacggaatctggctttgggcatggc 544
           ||||||||| ||| ||| ||| ||||||| || ||| | |||||||| ||||| ||||||
Sbjct: 826 ggtgcaatgacaatgacgtggctctgtgatacaatatcagaatctggatttggtcatggc 885

                                     
Query: 545 tcatctttgattatctgtgttggaat 570
           |||||| ||||||| ||||| |||||
Sbjct: 886 tcatctctgattatttgtgtgggaat 911



to top

>emb|BX820289.1|CNS0A8QZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH19ZD10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1800

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                       
Query: 488 gcaatgtcaacgacttggatctgtgacaccataacggaatctggctttgggcatggctca 547
           |||||| ||| ||| ||| ||||||| || ||| | |||||||| ||||| |||||||||
Sbjct: 839 gcaatgacaatgacgtggctctgtgatacaatatcagaatctggatttggtcatggctca 898

                                  
Query: 548 tctttgattatctgtgttggaat 570
           ||| ||||||| ||||| |||||
Sbjct: 899 tctctgattatttgtgtgggaat 921



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 314 aaggaaggattagacgggcatgagaagatcaaaagctatatatggtggctatc 366
           |||||||| ||||| || || ||||||||||| || |||||||||||||||||
Sbjct: 665 aaggaaggcttagatggtcacgagaagatcaagagttatatatggtggctatc 717



to top

>ref|XM_368718.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00526.4) partial mRNA
          Length = 495

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 469 ctttctgcttgtcctcggtgca 490
           ||||||||||||||||||||||
Sbjct: 309 ctttctgcttgtcctcggtgca 330



to top

>gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184129

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 240   tcagtcatcagatatcagcatc 261
             ||||||||||||||||||||||
Sbjct: 16416 tcagtcatcagatatcagcatc 16395



to top

>gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, complete sequence
          Length = 207293

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 351    atatatggtggctatcactgg 371
              |||||||||||||||||||||
Sbjct: 176897 atatatggtggctatcactgg 176877



to top

>gb|AC110980.6| Rattus norvegicus 4 BAC CH230-94D15 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 87812

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 532  ctttgggcatggctcatctt 551
            ||||||||||||||||||||
Sbjct: 2073 ctttgggcatggctcatctt 2054



to top

>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
              Contains the 3' end of the gene for a novel protein similar
              to sorting nexin 7 (SNX7), the TSCOT gene for thymic
              stromal co-transporter, a pseudogene similar to Mus
              musculus major urinary proteins and a CpG island, complete
              sequence
          Length = 141659

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    ttgtactgtgtcatgctatt 410
              ||||||||||||||||||||
Sbjct: 127570 ttgtactgtgtcatgctatt 127589



to top

>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 426    tatatgcagcaagttacagg 445
              ||||||||||||||||||||
Sbjct: 117258 tatatgcagcaagttacagg 117277



to top

>emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chromosome 11 Contains
            the 3' end of the gene for a novel protein and the 3' end
            of a novel gene, complete sequence
          Length = 191191

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 264  ttgtgatgcaggttctttgc 283
            ||||||||||||||||||||
Sbjct: 2384 ttgtgatgcaggttctttgc 2403



to top

>gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map nga361, complete
             sequence
          Length = 79734

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 539   catggctcatctttgattatctgtgttggaat 570
             |||||||||||| ||||||| ||||| |||||
Sbjct: 17568 catggctcatctctgattatttgtgtgggaat 17599



to top

>gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, complete sequence
          Length = 135968

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   attttgcttctgaactgaagctat 221
             |||||||||||||| |||||||||
Sbjct: 15479 attttgcttctgaaatgaagctat 15502



to top

>gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, complete sequence
          Length = 174055

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    gcaggttctttgccatgttc 290
              ||||||||||||||||||||
Sbjct: 157670 gcaggttctttgccatgttc 157651



to top

>dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1091A08
            product:unclassifiable, full insert sequence
          Length = 6842

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  ttctttgccatgttcttcca 295
            ||||||||||||||||||||
Sbjct: 5392 ttctttgccatgttcttcca 5373



to top

>gb|AY062590.1| Arabidopsis thaliana putative preprotein translocase SECY protein
            (At2g31530; T9H9.5) mRNA, complete cds
          Length = 2065

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 539  catggctcatctttgattatctgtgttggaat 570
            |||||||||||| ||||||| ||||| |||||
Sbjct: 1124 catggctcatctctgattatttgtgtgggaat 1155



to top

>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9
          Length = 151959

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   gcaggttctttgccatgttc 290
             ||||||||||||||||||||
Sbjct: 72179 gcaggttctttgccatgttc 72160



to top

>dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1016F12, complete
              sequence
          Length = 200738

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    gcaggttctttgccatgttc 290
              ||||||||||||||||||||
Sbjct: 146808 gcaggttctttgccatgttc 146789



to top

>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   ttctttgccatgttcttcca 295
             ||||||||||||||||||||
Sbjct: 75384 ttctttgccatgttcttcca 75403



to top

>dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
            sequence
          Length = 174667

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  gcaggttctttgccatgttc 290
            ||||||||||||||||||||
Sbjct: 2336 gcaggttctttgccatgttc 2317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,500,322
Number of Sequences: 3902068
Number of extensions: 4500322
Number of successful extensions: 87035
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86938
Number of HSP's gapped (non-prelim): 97
length of query: 570
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 547
effective length of database: 17,143,297,704
effective search space: 9377383844088
effective search space used: 9377383844088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top