No.
Definition
Score (bits)
E Value
1 ref|XM_475203.1| Oryza sativa (japonica cultivar-group), predic...
553
e-154
2 dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clon...
553
e-154
3 gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome...
202
9e-49
4 gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome...
202
9e-49
5 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
202
9e-49
6 ref|NM_128710.2| Arabidopsis thaliana EMB2289; protein transloca...
68
3e-08
7 emb|BX820289.1|CNS0A8QZ Arabidopsis thaliana Full-length cDNA Co...
62
2e-06
8 ref|XM_368718.1| Magnaporthe grisea 70-15 chromosome VI hypothet...
44
0.50
9 gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Canc...
44
0.50
10 gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, com...
42
2.0
11 gb|AC110980.6| Rattus norvegicus 4 BAC CH230-94D15 (Children's H...
40
7.7
12 emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch...
40
7.7
13 gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome...
40
7.7
14 emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chro...
40
7.7
15 gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map ...
40
7.7
16 gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, com...
40
7.7
17 gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, com...
40
7.7
18 dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LIN...
40
7.7
19 gb|AY062590.1| Arabidopsis thaliana putative preprotein transloc...
40
7.7
20 dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
7.7
21 dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
7.7
22 gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complet...
40
7.7
23 dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
7.7
>gb|AC132492.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
complete sequence
Length = 146303
Score = 202 bits (102), Expect = 9e-49
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 1 ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
||||||||| ||||||||||||||| ||||||||| || ||||||||||||| || ||
Sbjct: 12847 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 12788
Query: 61 gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 12787 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 12728
Query: 121 gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
|||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 12727 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 12668
Query: 181 tgcag 185
|||||
Sbjct: 12667 tgcag 12663
Score = 117 bits (59), Expect = 4e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 181 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 12532 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 12473
Query: 241 cagtcatcagatatcagcatcgattgtgatgcaggttct 279
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 12472 cagtcatcagatttcagcatctattgtcatgcaggttct 12434
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 273 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 332
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 12214 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 12155
Query: 333 atgagaagatcaaaagctatat 354
|||||||||||||| |||||||
Sbjct: 12154 atgagaagatcaaaggctatat 12133
Score = 83.8 bits (42), Expect = 6e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 356 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 415
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 12019 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 11960
Query: 416 cagtactccatatatgcagcaagttacagg 445
|| || || |||||||| ||||||||||||
Sbjct: 11959 caatattctatatatgctgcaagttacagg 11930
Score = 71.9 bits (36), Expect = 2e-09
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 446 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 505
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 11817 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 11758
Query: 506 atctgtgacaccataacggaatctggctttgg 537
||||||||||| ||| |||||||||| |||||
Sbjct: 11757 atctgtgacactatatcggaatctggatttgg 11726
Score = 40.1 bits (20), Expect = 7.7
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 539 catggctcatctttgattatctgtgttggaat 570
|||||||| || |||||||||||||| |||||
Sbjct: 11400 catggctcttccttgattatctgtgtgggaat 11369
>gb|AC134932.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
complete sequence
Length = 151267
Score = 202 bits (102), Expect = 9e-49
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 1 ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
||||||||| ||||||||||||||| ||||||||| || ||||||||||||| || ||
Sbjct: 130669 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 130610
Query: 61 gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 130609 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 130550
Query: 121 gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
|||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 130549 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 130490
Query: 181 tgcag 185
|||||
Sbjct: 130489 tgcag 130485
Score = 117 bits (59), Expect = 4e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 181 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 130354 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 130295
Query: 241 cagtcatcagatatcagcatcgattgtgatgcaggttct 279
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 130294 cagtcatcagatttcagcatctattgtcatgcaggttct 130256
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 273 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 332
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 130036 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 129977
Query: 333 atgagaagatcaaaagctatat 354
|||||||||||||| |||||||
Sbjct: 129976 atgagaagatcaaaggctatat 129955
Score = 83.8 bits (42), Expect = 6e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 356 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 415
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 129841 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 129782
Query: 416 cagtactccatatatgcagcaagttacagg 445
|| || || |||||||| ||||||||||||
Sbjct: 129781 caatattctatatatgctgcaagttacagg 129752
Score = 71.9 bits (36), Expect = 2e-09
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 446 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 505
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 129639 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 129580
Query: 506 atctgtgacaccataacggaatctggctttgg 537
||||||||||| ||| |||||||||| |||||
Sbjct: 129579 atctgtgacactatatcggaatctggatttgg 129548
Score = 40.1 bits (20), Expect = 7.7
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 539 catggctcatctttgattatctgtgttggaat 570
|||||||| || |||||||||||||| |||||
Sbjct: 129222 catggctcttccttgattatctgtgtgggaat 129191
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 202 bits (102), Expect = 9e-49
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 1 ggcgcggcttggggccgtggcggagggcgcggcggnagccttcttccgcagcgaaatacg 60
||||||||| ||||||||||||||| ||||||||| || ||||||||||||| || ||
Sbjct: 19208771 ggcgcggctgggggccgtggcggagagcgcggcggaggcgctcttccgcagcgagattcg 19208712
Query: 61 gcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcgtcggctacttcgtgcc 120
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 19208711 ccggcggctggccgtcacggccgtgctcatcctgctcagccgcgtcggctacttcgtccc 19208652
Query: 121 gcttcctgggttcgaccgccgcctcatccccgactcctatctcagcttcgccccgctccc 180
|||||| ||||||||||| || ||||||||||| ||||| |||||||| || || || ||
Sbjct: 19208651 gcttcccgggttcgaccgacggctcatccccgattcctacctcagctttgcaccccttcc 19208592
Query: 181 tgcag 185
|||||
Sbjct: 19208591 tgcag 19208587
Score = 117 bits (59), Expect = 4e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 181 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 240
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 19208456 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 19208397
Query: 241 cagtcatcagatatcagcatcgattgtgatgcaggttct 279
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 19208396 cagtcatcagatttcagcatctattgtcatgcaggttct 19208358
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 273 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 332
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 19208138 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 19208079
Query: 333 atgagaagatcaaaagctatat 354
|||||||||||||| |||||||
Sbjct: 19208078 atgagaagatcaaaggctatat 19208057
Score = 83.8 bits (42), Expect = 6e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 356 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 415
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 19207943 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 19207884
Query: 416 cagtactccatatatgcagcaagttacagg 445
|| || || |||||||| ||||||||||||
Sbjct: 19207883 caatattctatatatgctgcaagttacagg 19207854
Score = 71.9 bits (36), Expect = 2e-09
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 446 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 505
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 19207741 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 19207682
Query: 506 atctgtgacaccataacggaatctggctttgg 537
||||||||||| ||| |||||||||| |||||
Sbjct: 19207681 atctgtgacactatatcggaatctggatttgg 19207650
Score = 40.1 bits (20), Expect = 7.7
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 539 catggctcatctttgattatctgtgttggaat 570
|||||||| || |||||||||||||| |||||
Sbjct: 19207324 catggctcttccttgattatctgtgtgggaat 19207293
>dbj|AP003786.2 | Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
sequence
Length = 174667
Score = 40.1 bits (20), Expect = 7.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 271 gcaggttctttgccatgttc 290
||||||||||||||||||||
Sbjct: 2336 gcaggttctttgccatgttc 2317
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,500,322
Number of Sequences: 3902068
Number of extensions: 4500322
Number of successful extensions: 87035
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86938
Number of HSP's gapped (non-prelim): 97
length of query: 570
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 547
effective length of database: 17,143,297,704
effective search space: 9377383844088
effective search space used: 9377383844088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)