ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26e08 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 109 bits (272), Expect(2) = 7e-46 Identities = 55/63 (87%), Positives = 55/63 (87%) Frame = +3 Query: 39 SSSPLLQRSKLGGVRPSARPSLVIXXXXXXXXQTAQPYGPGGGVAFKEGVDASGRVAKGK 218 SSSPLLQRSKLGGVRPSARPSLVI QTAQPYGPGGGVAFKEGVDASGRVAKGK Sbjct: 14 SSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGK 73 Query: 219 GVY 227 GVY Sbjct: 74 GVY 76 Score = 94.4 bits (233), Expect(2) = 7e-46 Identities = 42/48 (87%), Positives = 44/48 (91%) Frame = +1 Query: 211 RGRVFTXFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 354 +G+ FADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT Sbjct: 71 KGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 82.0 bits (201), Expect(2) = 4e-23 Identities = 35/49 (71%), Positives = 40/49 (81%) Frame = +1 Query: 208 PRGRVFTXFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 354 P+G+ + DKYGANVDGYSPIY +EWSPSGDVYVGG TGL +WAVT Sbjct: 70 PKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118 Score = 45.4 bits (106), Expect(2) = 4e-23 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Frame = +3 Query: 54 LQRSKLGGVRPSARPS--LVIXXXXXXXXQTAQPYGPGGGVAFKEGVDASGRVAKGKGVY 227 L+++ + G+ AR S + +T +PYG G +A ++GVDASGR KGKGVY Sbjct: 17 LEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVY 76
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 82.0 bits (201), Expect(2) = 1e-22 Identities = 35/49 (71%), Positives = 40/49 (81%) Frame = +1 Query: 208 PRGRVFTXFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 354 P+G+ + DKYGANVDGYSPIY +EWSPSGDVYVGG TGL +WAVT Sbjct: 70 PKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118 Score = 43.9 bits (102), Expect(2) = 1e-22 Identities = 19/31 (61%), Positives = 24/31 (77%) Frame = +3 Query: 135 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVY 227 +T +PYG G +A ++GVDASGR KGKGVY Sbjct: 46 KTDKPYGINGSMALRDGVDASGRKPKGKGVY 76
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 79.3 bits (194), Expect(2) = 1e-21 Identities = 34/48 (70%), Positives = 39/48 (81%) Frame = +1 Query: 211 RGRVFTXFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 354 +G+ F DKYGANVDGYSPIY ++WSPSGDVYVGG TGL +WAVT Sbjct: 69 KGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVT 116 Score = 42.7 bits (99), Expect(2) = 1e-21 Identities = 18/31 (58%), Positives = 24/31 (77%) Frame = +3 Query: 135 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVY 227 +T +PYG G ++ ++GVDASGR KGKGVY Sbjct: 44 KTDKPYGINGSMSLRDGVDASGRKQKGKGVY 74
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 80.1 bits (196), Expect(2) = 6e-21 Identities = 34/49 (69%), Positives = 38/49 (77%) Frame = +1 Query: 208 PRGRVFTXFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 354 P G+ F DKYGANVDGYSPIY EEW+P+GDVY GG TGL +WAVT Sbjct: 72 PTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120 Score = 40.0 bits (92), Expect(2) = 6e-21 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +3 Query: 24 FGSETSSS----PLLQRSKLGGVRPSARPSLVIXXXXXXXXQTAQPYGPGGGVAFKEGVD 191 FG +T S+ P L RS S + + +P G GGG+ ++GVD Sbjct: 16 FGVDTKSAVKGLPSLSRSSA---------SFTVRASGVKKIKVDKPLGIGGGMKLRDGVD 66 Query: 192 ASGRVAKGKGVY 227 +SGR GKGVY Sbjct: 67 SSGRKPTGKGVY 78
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 71.6 bits (174), Expect(2) = 1e-19 Identities = 31/41 (75%), Positives = 33/41 (80%) Frame = +1 Query: 232 FADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 354 + DKYGANVDGYSPIY EWS SGDVY GG TGL +WAVT Sbjct: 80 YVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120 Score = 43.9 bits (102), Expect(2) = 1e-19 Identities = 21/46 (45%), Positives = 27/46 (58%) Frame = +3 Query: 90 ARPSLVIXXXXXXXXQTAQPYGPGGGVAFKEGVDASGRVAKGKGVY 227 ARPS I +T +P+G G + ++GVDASGR KG GVY Sbjct: 33 ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVY 78
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 73.6 bits (179), Expect(2) = 2e-18 Identities = 32/41 (78%), Positives = 34/41 (82%) Frame = +1 Query: 232 FADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 354 F DKYGANVDGYSPIY +EWS SGDVY GG TGL +WAVT Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVT 121 Score = 38.1 bits (87), Expect(2) = 2e-18 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = +3 Query: 135 QTAQPYGPGGGVAFKEGVDASGRVAKGKGVY 227 +T +P+G G + ++GVDASGR KG GVY Sbjct: 49 KTDKPFGVNGSMDLRDGVDASGRKGKGYGVY 79
>ENDD1_MOUSE (Q8C522) Endonuclease domain-containing 1 protein precursor (EC| 3.1.30.-) Length = 501 Score = 30.0 bits (66), Expect = 4.5 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = -2 Query: 515 VVIFVSITYVLTVIIRTIIHIVWCIA 438 + +F I Y++T ++R I+H++W +A Sbjct: 341 IKLFQLIYYLVTAVLRNIVHLLWLVA 366
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.3 bits (64), Expect = 7.7 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -2 Query: 365 IPARVTAQRNSPVFPPT*TSPLGDHSSGVYIGLYPSTFAPYLSA 234 +P + A +P T SPL S+G + +TF+P+LSA Sbjct: 1595 VPTTIMAGIVTPFVGTTAFSPLSSKSTGAISSIPKTTFSPFLSA 1638
>ARI5B_HUMAN (Q14865) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (Mrf1-like) (Modulator recognition factor 2) (MRF-2) Length = 1188 Score = 29.3 bits (64), Expect = 7.7 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 472 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 305 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESICDEFAPNLKGRPRK 254
>ARI5B_MOUSE (Q8BM75) AT-rich interactive domain-containing protein 5B (ARID| domain-containing protein 5B) (MRF1-like) (Modulator recognition factor protein 2) (MRF-2) (Developmentally and sexually retarded with transient immune abnormalities protein) Length = 1188 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/56 (30%), Positives = 26/56 (46%) Frame = -3 Query: 472 SALLYTSFGA*LGLLHIGFRKPRR*YCRQEEHRPAEFQQESLPRETAPSFLQHKRR 305 S++L F LG + + R P+ YCR P + ES+ E AP+ R+ Sbjct: 199 SSILTDQFALALGGIAVVSRNPQILYCRDTFDHPTLIENESVCDEFAPNLKGRPRK 254
>TF7L1_MOUSE (Q9Z1J1) Transcription factor 7-like 1 (HMG box transcription| factor 3) (TCF-3) (mTCF-3) Length = 584 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -2 Query: 335 SPVFPPT*TSPLGDHSSGVYIGLYPSTFAPY--LSANXVNTLP 213 SP PPT SP D +G+ +PS +PY LS V +P Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIP 242
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -3 Query: 397 YCRQEEHRPAEFQQESLPRETAPSFLQHKRRHLETT 290 Y R + +P + QQ+ L + P QH+++H ++T Sbjct: 351 YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDST 386 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,857,478 Number of Sequences: 219361 Number of extensions: 1958370 Number of successful extensions: 6351 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5791 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6338 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
