>YIF0_YEAST (P40186) Hypothetical 32.0 kDa protein in RPL34B-SYG1 intergenic|
           region
          Length = 285

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/49 (46%), Positives = 31/49 (63%)
 Frame = +1

Query: 55  DVCYNNAYFAKVGGISLVEMNYLEVDFLFGVGFDLNVTPETFGHYCAVL 201
           D  Y+N+ +AKVGGISL E+N+LE+ FL    F L V+ E    Y  +L
Sbjct: 230 DFFYSNSRYAKVGGISLQELNHLELQFLILCDFKLLVSVEEMQKYANLL 278

>YEO9_YEAST (P40038) Hypothetical 47.0 kDa protein in PET117-CEM1 intergenic|
           region
          Length = 420

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = +1

Query: 55  DVCYNNAYFAKVGGISLVEMNYLEVDFLFGVGFDLNVTPETFGHYCAVL 201
           D  Y+N+ +++VGGISL E+N+LE+ FL    F+L ++      Y  +L
Sbjct: 354 DFFYSNSRYSRVGGISLQELNHLELQFLVLCDFELLISVNELQRYADLL 402

>PHO80_YEAST (P20052) Phosphate system cyclin PHO80|
          Length = 293

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = +1

Query: 70  NAYFAKVGGISLVEMNYLEVDFLFGVGF-----DLNVT 168
           NA++AKVGG+   E+N LE DFL  V +     D N+T
Sbjct: 141 NAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNIT 178

>PREG_NEUCR (Q06712) Nuc-1 negative regulatory protein preg|
          Length = 483

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 55  DVCYNNAYFAKVGGISLVEMNYLEVDFLFGVGFDLNVTPETFGHY 189
           D    N  +A+VGG+ + E+N LE++FL  V + +   P+    Y
Sbjct: 375 DSFLTNTLYARVGGVRVAELNMLELEFLHRVDWKIVPDPDVLVAY 419

>LEP4_BURPS (Q9ZF70) Type 4 prepilin-like proteins leader peptide-processing|
           enzyme [Includes: Leader peptidase (EC 3.4.23.43)
           (Prepilin peptidase); N-methyltransferase (EC 2.1.1.-)]
          Length = 275

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
 Frame = +3

Query: 264 LRIRGRCRQLRQPAAARGMKPPAGQHRAAWKQVRITLHGRLHDACISVSLCV*ICSASQI 443
           + +RGRCR  R P  AR   P       A     + L G    A  +  LC  + + S I
Sbjct: 81  IALRGRCRHCRTPIGAR--YPLIELASGALAAGALALFGPSGAALAAFGLCAALLAMSAI 138

Query: 444 AIARWSSSSSMP--------CCKMLATMISHRVLVL----GFCFLWCV 551
            +       S+         C  +  T  S R  V+    G+ FLWC+
Sbjct: 139 DMQTGFLPDSLTLPLLWAGLCVNLWGTFASLRAAVIGAIAGYLFLWCI 186

>DIDO1_HUMAN (Q9BTC0) Death-inducer obliterator 1 (DIO-1) (Death-associated|
            transcription factor 1) (DATF-1) (hDido1)
          Length = 2240

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
 Frame = +3

Query: 144  RRVRPQRHAGDVRPLLRRA--------PVRDALRGGSSCAAQAAALLPLRIRGRCRQLRQ 299
            RR+  +   G+  PL R +        P RDA RGG     QA   +P        + ++
Sbjct: 1564 RRLATETGEGEGEPLSRLSARGAQGALPERDASRGG--LVGQAPMPVP--------EEKE 1613

Query: 300  PAA---ARGMKPPAGQHRAAWK 356
            PA+   A G KPPAG  +  WK
Sbjct: 1614 PASSPWASGEKPPAGSEQDGWK 1635

>PRAF2_BOVIN (Q2KHX3) PRA1 family protein 2|
          Length = 178

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 24/72 (33%), Positives = 32/72 (44%)
 Frame = +3

Query: 372 LHGRLHDACISVSLCV*ICSASQIAIARWSSSSSMPCCKMLATMISHRVLVLGFCFLWCV 551
           LH  L    ++V+L + +C+A   A  R    S    C  LA      VL +GF  LW  
Sbjct: 65  LHTLLSALVVAVALGMLVCAAENRAAVRRCRRSHPAAC--LAA-----VLAVGFLVLWAA 117

Query: 552 GQ*DTSVLGFAG 587
           G   T +L  AG
Sbjct: 118 GGAGTFLLSIAG 129

>PLSX_THET2 (Q72HV0) Fatty acid/phospholipid synthesis protein plsX|
          Length = 326

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
 Frame = +3

Query: 123 GGRLPVWR--------------RVRPQRHAGDVRPLLRRAPVRDALRGGSSCAAQAAALL 260
           G  LPVW               R RPQ        LL+R  V+  +  G S A  AAALL
Sbjct: 48  GADLPVWHAPDHIRMEEAATEVRRRPQASVRVAMELLKRGEVQAVVSMGHSGATLAAALL 107

Query: 261 PLRIRGRCRQLRQPA 305
            L   GR + + +PA
Sbjct: 108 VL---GRVKGVERPA 119

>MSX1_CHICK (P28361) Homeobox protein MSX-1 (Msh homeobox 1-like protein)|
           (CHOX-7)
          Length = 249

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +3

Query: 126 GRLPVWRRVRPQRHAGDVRPLLRRAPVRDALRGGSSCAAQAAALLPLR------IRGRCR 287
           G  P   R R +R  G   P  R +  R +  GG+  AA +   LP+R       RGR  
Sbjct: 24  GSWPTAERGRQRRSRGFRAPSRRPSQPRRSDDGGTDVAAPSRRPLPVRRGAGQAARGRAA 83

Query: 288 QLRQPAAA 311
           Q R+P  A
Sbjct: 84  QSREPREA 91

>TAIP2_HUMAN (Q8WYN3) TGF-beta-induced apoptosis protein 2 (TAIP-2)|
          Length = 585

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +1

Query: 106 VEMNYLEVDFLFGVGFDL---NVTPETFGHYCAVLQSEMLCAEAPPAPPRLQHCCLSESE 276
           +  NY E D +      L    +TPE F  Y    +     +  P A P +  CC S   
Sbjct: 450 ISENYSERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSEN 509

Query: 277 DDAASCGS 300
           D    C S
Sbjct: 510 DSGVPCNS 517


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,826,964
Number of Sequences: 219361
Number of extensions: 1617181
Number of successful extensions: 4835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4835
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)