>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  298 bits (763), Expect = 6e-81
 Identities = 148/154 (96%), Positives = 149/154 (96%)
 Frame = +3

Query: 60  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL 239
           FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL
Sbjct: 5   FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGL 64

Query: 240 AYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 419
           AYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA
Sbjct: 65  AYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIA 124

Query: 420 PAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           PAFMDKLVVHLSKNFMTLPNIKIPLI G  G +G
Sbjct: 125 PAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKG 158

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  265 bits (678), Expect = 4e-71
 Identities = 133/156 (85%), Positives = 141/156 (90%), Gaps = 2/156 (1%)
 Frame = +3

Query: 60  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD--KWK 233
           FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD  +WK
Sbjct: 5   FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQDRWK 63

Query: 234 GLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFY 413
           GLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTMGGFY
Sbjct: 64  GLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFY 123

Query: 414 IAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           IAP+FMDKLVVH+SKNFMTLPNIK+PLI G  G +G
Sbjct: 124 IAPSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKG 159

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  229 bits (583), Expect = 5e-60
 Identities = 118/160 (73%), Positives = 134/160 (83%), Gaps = 6/160 (3%)
 Frame = +3

Query: 60  FSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKRNTD- 224
           FSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE + TD 
Sbjct: 5   FSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDE 64

Query: 225 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 401
            +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+FDN M
Sbjct: 65  DRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMM 124

Query: 402 GGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
            GFYIA  FMDKLVVHLSKNFMTLPNIK+PLI G  G +G
Sbjct: 125 DGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKG 164

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  221 bits (564), Expect = 7e-58
 Identities = 115/158 (72%), Positives = 129/158 (81%), Gaps = 4/158 (2%)
 Frame = +3

Query: 60  FSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNTD--K 227
           FSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + TD  +
Sbjct: 5   FSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQTDADR 58

Query: 228 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 407
           WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDNTM G
Sbjct: 59  WKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDG 118

Query: 408 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
            YIAPAFMDKL+VHL+KNFMTLPNIK+PLI G  G +G
Sbjct: 119 LYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKG 156

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  184 bits (467), Expect = 1e-46
 Identities = 95/153 (62%), Positives = 114/153 (74%)
 Frame = +3

Query: 63  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 242
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 243 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 422
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135

Query: 423 AFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           AFMDKLVVH++KNF+TLPNIK+PLI G  G +G
Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPLILGIWGGKG 168

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  182 bits (463), Expect = 4e-46
 Identities = 94/155 (60%), Positives = 115/155 (74%), Gaps = 2/155 (1%)
 Frame = +3

Query: 63  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 236
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 237 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 416
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133

Query: 417 APAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           APAFMDKLVVH++KNFMTLPN+K+PLI G  G +G
Sbjct: 134 APAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKG 168

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  178 bits (451), Expect = 9e-45
 Identities = 91/163 (55%), Positives = 115/163 (70%), Gaps = 11/163 (6%)
 Frame = +3

Query: 66  STVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE-NIDEK 212
           STVGA    P +  G   +  +  +  + G S K          +  F ++A E + D++
Sbjct: 6   STVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQEISEDQQ 65

Query: 213 RNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 392
            + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ D
Sbjct: 66  TDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLD 125

Query: 393 NTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           N M GFYIAPAFMDKLVVH++KNF++LPNIKIPLI G  G +G
Sbjct: 126 NNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKG 168

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  178 bits (451), Expect = 9e-45
 Identities = 91/163 (55%), Positives = 115/163 (70%), Gaps = 11/163 (6%)
 Frame = +3

Query: 66  STVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE-NIDEK 212
           STVGA    P +  G   +  +  +  + G S K          +  F ++A E + D++
Sbjct: 6   STVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQEISEDQQ 65

Query: 213 RNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFD 392
            + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGLR+Y+ D
Sbjct: 66  TDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLD 125

Query: 393 NTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           N M GFYIAPAFMDKLVVH++KNF++LPNIKIPLI G  G +G
Sbjct: 126 NNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKG 168

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  177 bits (448), Expect = 2e-44
 Identities = 96/168 (57%), Positives = 114/168 (67%), Gaps = 16/168 (9%)
 Frame = +3

Query: 66  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 203
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 204 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 377
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 378 KYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           +Y+ DN + GFYIAPAFMDKLVVH++KNF+ LPNIK+PLI G  G +G
Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKG 172

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  174 bits (441), Expect = 1e-43
 Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
 Frame = +3

Query: 63  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--DKW 230
           +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D+W
Sbjct: 19  NNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSDRW 75

Query: 231 KGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGF 410
           KGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ GF
Sbjct: 76  KGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGF 135

Query: 411 YIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           YIAP+FMDKLVVH++KNF+ LPNIK+PLI G  G +G
Sbjct: 136 YIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKG 172

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  173 bits (439), Expect = 2e-43
 Identities = 90/152 (59%), Positives = 115/152 (75%), Gaps = 3/152 (1%)
 Frame = +3

Query: 75  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 245
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 425
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 426 FMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           F+DKLVVH++KNFMTLPNIK+PLI G  G +G
Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPLILGVWGGKG 172

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  171 bits (434), Expect = 9e-43
 Identities = 93/149 (62%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
 Frame = +3

Query: 78  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 254
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 255 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMD 434
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPAFMD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 435 KLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           KLVVH++KNF+ LPNIKIPLI G  G +G
Sbjct: 138 KLVVHITKNFLNLPNIKIPLILGVWGGKG 166

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  171 bits (432), Expect = 1e-42
 Identities = 94/152 (61%), Positives = 111/152 (73%), Gaps = 3/152 (1%)
 Frame = +3

Query: 75  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 245
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 425
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 426 FMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           F+DKLVVH++KNFMTLPNIK+PLI G  G +G
Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPLILGIWGGKG 170

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  170 bits (430), Expect = 2e-42
 Identities = 89/166 (53%), Positives = 110/166 (66%), Gaps = 14/166 (8%)
 Frame = +3

Query: 66  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 203
           ST+GA +  P              T F GK LKK     V+       +NR   + A+ +
Sbjct: 6   STIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVVAQEV 62

Query: 204 DEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 383
           DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ L+ Y
Sbjct: 63  DETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTY 121

Query: 384 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
             DN + GFYIAPAFMDKLVVH++KNF+TLPNIK+PLI G  G +G
Sbjct: 122 QLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKG 167

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  168 bits (426), Expect = 7e-42
 Identities = 89/166 (53%), Positives = 110/166 (66%), Gaps = 14/166 (8%)
 Frame = +3

Query: 66  STVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMAAENI 203
           ST+GA   T  N            FLG +LK      V+    +SK     F ++A ++ 
Sbjct: 6   STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVAEQDE 59

Query: 204 DEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKY 383
           +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S GLR Y
Sbjct: 60  EKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDY 119

Query: 384 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
            +DN + GFYIAPAFMDKL VH+ KNF+TLPNIK+PLI G  G +G
Sbjct: 120 SYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKG 165

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  110 bits (275), Expect = 2e-24
 Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
 Frame = +3

Query: 210 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 380
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 381 YDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
             F+N   GFYI+PAF+DK+ +H++KNFM LP IK+PLI G  G +G
Sbjct: 95  ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKG 141

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 22/38 (57%), Positives = 31/38 (81%)
 Frame = +3

Query: 408 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           +YIAP F+DKL VH++KNF+ LP +++PLI G  GR+G
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKG 40

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 21/38 (55%), Positives = 31/38 (81%)
 Frame = +3

Query: 408 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLIYGYLGRQG 521
           +YIAP F+DKL VH++KNF+ +P +++PLI G  GR+G
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKG 40

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 78  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 257
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 258 D--QQDITRGKGIVDSLFQAPTGDG 326
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 413 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 237
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -3

Query: 325 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 179
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>PRMA_LEGPH (Q5ZYB1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -2

Query: 485 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 321
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISFPEALQNPVHLVIANILLAPLI 233

Query: 320 ARGRLEERVHDALPSGDVLLVVG 252
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1060

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +3

Query: 144  NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 323
            N+H K +      + A +  D  R       LAY+++D    +       D +F A +G 
Sbjct: 807  NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858

Query: 324  GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNI 482
            G   HEA     E  S+   KYDF+  + G  + P  +  L      NF  L  +
Sbjct: 859  GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907

>PRMA_LEGPL (Q5WZ79) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -2

Query: 485 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 321
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   LV A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISSPEALQNPVHLVIANILLAPLI 233

Query: 320 ARGRLEERVHDALPSGDVLLVVG 252
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PRMA_LEGPA (Q5X7S8) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 289

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -2

Query: 485 LDVGQGHEVFGEMDNKLVHESRSDVEASH---GVVEVVLPQALADV--LVGAEDGLVGAV 321
           + +G  H    ++DN+ +  ++S+  A+H     + +  P+AL +   L+ A   L   +
Sbjct: 174 IKLGAKHVYAVDIDNQALQATQSNAHANHITESQLSISTPEALQNPVHLIIANILLAPLI 233

Query: 320 ARGRLEERVHDALPSGDVLLVVG 252
           +   L+ER H  LPSG  L+  G
Sbjct: 234 S---LKERFHQLLPSGAHLVTSG 253

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 246 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 380
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 156 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 314
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -2

Query: 413 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 234
           +E   G  E + P+A  DVL+ AE G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 188 LEVDLGTFEELAPEAPEDVLLVAESGVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = -2

Query: 494 EWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVAR 315
           +W  + G+G     E +N L  +  S+ + S G        +  DV  G E    G V+ 
Sbjct: 83  DWAEEGGEGSVAVEETENSLESQDVSEGDESEG------DASEGDVSEGDES--EGDVSE 134

Query: 314 GRLEERVHDALPSGDVLLVVGDI 246
           G + ER     PS +  L VG++
Sbjct: 135 GAVSERAEFPEPSEEAKLFVGNL 157

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 RNTDKWKGLAYDISDDQQDITRGKGI 290
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,314,998
Number of Sequences: 219361
Number of extensions: 1292804
Number of successful extensions: 4412
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4401
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)