ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal25o15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 969 bits (489), Expect = 0.0 Identities = 519/525 (98%), Gaps = 3/525 (0%) Strand = Plus / Plus Query: 1 cgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagnagatggctgctgcct 60 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 97 cgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-agatggctgctgcct 154 Query: 61 tctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 tctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctca 214 Query: 121 agaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 agaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttca 274 Query: 181 cagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 cagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttg 334 Query: 241 cgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgc 300 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 ctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgc 394 Query: 301 tcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 tcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacg 454 Query: 361 tcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 455 tcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctc 514 Query: 421 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 515 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 574 Query: 481 tcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 575 tcaagatcccactcatct-tgggtatctggggaggcaagggtcaa 618
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 894 bits (451), Expect = 0.0 Identities = 507/523 (96%), Gaps = 2/523 (0%) Strand = Plus / Plus Query: 3 cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagnagatggctgctgccttc 62 ||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct: 18 cgcgcatccaccgctgctagcaaggtcgagcaagcagcacag-agatggctgctgccttc 76 Query: 63 tcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaag 122 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 tcctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaag 136 Query: 123 aagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcaca 182 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 aagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacg 196 Query: 183 gtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcg 242 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 gtcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcg 256 Query: 243 tacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 257 tacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctc 316 Query: 303 ttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtc 362 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 317 ttccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtc 376 Query: 363 agccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcct 422 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 agccagggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcgctcct 436 Query: 423 gctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatc 482 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 437 gctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaacatc 496 Query: 483 aagatcccactcatctatgggtatctggggaggcaagggtcaa 525 |||||||||||||||| |||||||||||||||||||||||||| Sbjct: 497 aagatcccactcatct-tgggtatctggggaggcaagggtcaa 538
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 83 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 143 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 203 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 263 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 322 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 323 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 383 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 443 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 485 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 291 bits (147), Expect = 1e-75 Identities = 259/295 (87%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 227 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 287 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 346 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 347 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 406 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 407 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 466 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 467 gaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| Sbjct: 3179 gacactccccaacatcaaggttcctctcatc-ctgggtatctggggaggcaaggg 3232 Score = 135 bits (68), Expect = 2e-28 Identities = 82/84 (97%), Gaps = 2/84 (2%) Strand = Plus / Plus Query: 1 cgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagnagatggctgctgcct 60 |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 5317 cgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-agatggctgctgcct 5374 Query: 61 tctcctccaccgtcggggctccgg 84 |||||||||||||||||||||||| Sbjct: 5375 tctcctccaccgtcggggctccgg 5398 Score = 67.9 bits (34), Expect = 3e-08 Identities = 41/42 (97%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 484 agatcccactcatctatgggtatctggggaggcaagggtcaa 525 ||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatct-tgggtatctggggaggcaagggtcaa 6110
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 682 bits (344), Expect = 0.0 Identities = 360/364 (98%), Gaps = 1/364 (0%) Strand = Plus / Plus Query: 162 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatct-tgggtatctggggaggcaaggg 359 Query: 522 tcaa 525 |||| Sbjct: 360 tcaa 363
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 426 bits (215), Expect = e-116 Identities = 282/303 (93%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatct-tgggtatctggggaggaaaggg 555 Query: 522 tca 524 ||| Sbjct: 556 tca 558 Score = 224 bits (113), Expect = 2e-55 Identities = 137/145 (94%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| Sbjct: 78 agatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcc 137 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 |||| || |||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct: 138 tcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttca 197 Query: 166 aggccaacaggttcacagtcatggc 190 |||||||||||||||| |||||||| Sbjct: 198 aggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 406 bits (205), Expect = e-110 Identities = 279/303 (92%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatct-tgggtatctggggaggaaaggg 545 Query: 522 tca 524 ||| Sbjct: 546 tca 548 Score = 218 bits (110), Expect = 1e-53 Identities = 136/145 (93%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| Sbjct: 68 agatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcc 127 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 |||| || |||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct: 128 tcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttca 187 Query: 166 aggccaacaggttcacagtcatggc 190 |||||||||||||||| |||||||| Sbjct: 188 aggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 355 bits (179), Expect = 9e-95 Identities = 273/303 (90%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaaggg 502 Query: 522 tca 524 ||| Sbjct: 503 tca 505 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 355 bits (179), Expect = 9e-95 Identities = 273/303 (90%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaaggg 539 Query: 522 tca 524 ||| Sbjct: 540 tca 542 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 355 bits (179), Expect = 9e-95 Identities = 273/303 (90%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaaggg 538 Query: 522 tca 524 ||| Sbjct: 539 tca 541 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 355 bits (179), Expect = 9e-95 Identities = 273/303 (90%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaaggg 322 Query: 522 tca 524 ||| Sbjct: 323 tca 325
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 355 bits (179), Expect = 9e-95 Identities = 273/303 (90%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaaggg 543 Query: 522 tca 524 ||| Sbjct: 544 tca 546 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 355 bits (179), Expect = 9e-95 Identities = 273/303 (90%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaaggg 537 Query: 522 tca 524 ||| Sbjct: 538 tca 540 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 347 bits (175), Expect = 2e-92 Identities = 272/303 (89%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaaggg 510 Query: 522 tca 524 ||| Sbjct: 511 tca 513 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 347 bits (175), Expect = 2e-92 Identities = 272/303 (89%), Gaps = 1/303 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactca-ccctgggtatctggggaggcaaggg 550 Query: 522 tca 524 ||| Sbjct: 551 tca 553 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 299 bits (151), Expect = 5e-78 Identities = 260/295 (88%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 227 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 287 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 346 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 347 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 406 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 407 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 466 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 467 gaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||| || |||||||||||| |||| |||||| |||||||||||||||||||||| Sbjct: 457 gacactccccaacatcaaggtccctctcatc-ctgggtatctggggaggcaaggg 510 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 47 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 106 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 107 cgggaagaagctcaagaagcagg 129 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 291 bits (147), Expect = 1e-75 Identities = 259/295 (87%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 227 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 287 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 346 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 347 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 406 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 407 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 466 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 467 gaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||| || |||||||||||| | || |||||| |||||||||||||||||||||| Sbjct: 610 gacactccccaacatcaaggttcctctcatc-ctgggtatctggggaggcaaggg 663
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 220 bits (111), Expect = 4e-54 Identities = 163/179 (91%), Gaps = 1/179 (0%) Strand = Plus / Plus Query: 346 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 405 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 406 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 465 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 466 tgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtca 524 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 447 tgaccctccccaacatcaaggtcccactcatc-ctgggtatctggggaggcaagggtca 504 Score = 172 bits (87), Expect = 7e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 46 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 105 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 106 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 165 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 166 aggccaacaggttca 180 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 282 aagggcatcgtggactcgctcttccaggc 310 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 200 bits (101), Expect = 3e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Minus Query: 380 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 439 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 440 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcta 499 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 109317 Query: 500 tgggtatctggggaggcaagggtca 524 ||||||||||||||||||||||||| Sbjct: 109316 tgggtatctggggaggcaagggtca 109292 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 342 ctcagctcctacgagtacgtcagccaggg 370 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 227 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 287 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 337 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 93 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 152 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 153 ggcaagagctccaaggccaacaggttca 180 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 46 agatggctgctgccttctcctccaccgtcggggctccgg 84 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 200 bits (101), Expect = 3e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Minus Query: 380 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 439 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 440 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcta 499 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 31194 Query: 500 tgggtatctggggaggcaagggtca 524 ||||||||||||||||||||||||| Sbjct: 31193 tgggtatctggggaggcaagggtca 31169 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 342 ctcagctcctacgagtacgtcagccaggg 370 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 227 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 287 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 337 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 93 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 152 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 153 ggcaagagctccaaggccaacaggttca 180 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 46 agatggctgctgccttctcctccaccgtcggggctccgg 84 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 200 bits (101), Expect = 3e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Minus Query: 380 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 439 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 440 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcta 499 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 28304456 Query: 500 tgggtatctggggaggcaagggtca 524 ||||||||||||||||||||||||| Sbjct: 28304455 tgggtatctggggaggcaagggtca 28304431 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 342 ctcagctcctacgagtacgtcagccaggg 370 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 227 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 287 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 337 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 93 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 152 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 153 ggcaagagctccaaggccaacaggttca 180 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 46 agatggctgctgccttctcctccaccgtcggggctccgg 84 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 200 bits (101), Expect = 3e-48 Identities = 135/145 (93%), Gaps = 1/145 (0%) Strand = Plus / Minus Query: 380 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 439 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 440 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcta 499 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatc-c 28286905 Query: 500 tgggtatctggggaggcaagggtca 524 ||||||||||||||||||||||||| Sbjct: 28286904 tgggtatctggggaggcaagggtca 28286880 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 342 ctcagctcctacgagtacgtcagccaggg 370 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 227 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 287 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 337 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 93 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 152 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 153 ggcaagagctccaaggccaacaggttca 180 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 46 agatggctgctgccttctcctccaccgtcggggctccgg 84 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 184 bits (93), Expect = 2e-43 Identities = 247/297 (83%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||||||||||| ||||||||| | || |||||| ||||||||||||||||||| Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatc-ctgggtatctggggaggcaa 508 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 48 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 101 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 102 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 158 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 159 agctcca 165 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 167 bits (84), Expect = 5e-38 Identities = 223/268 (83%), Gaps = 1/268 (0%) Strand = Plus / Plus Query: 258 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 317 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 318 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 377 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 378 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 437 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 438 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 497 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcat- 473 Query: 498 tatgggtatctggggaggcaagggtcaa 525 | ||||||||||||||||||| |||||| Sbjct: 474 tttgggtatctggggaggcaaaggtcaa 501
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 167 bits (84), Expect = 5e-38 Identities = 223/268 (83%), Gaps = 1/268 (0%) Strand = Plus / Plus Query: 258 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 317 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 318 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 377 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 378 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 437 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 438 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 497 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcat- 336 Query: 498 tatgggtatctggggaggcaagggtcaa 525 | ||||||||||||||||||| |||||| Sbjct: 337 tttgggtatctggggaggcaaaggtcaa 364
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 165 bits (83), Expect = 2e-37 Identities = 222/267 (83%), Gaps = 1/267 (0%) Strand = Plus / Plus Query: 258 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 317 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 318 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 377 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 378 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 437 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 438 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatc 497 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcat- 366 Query: 498 tatgggtatctggggaggcaagggtca 524 | ||||||||||||||||||| ||||| Sbjct: 367 tttgggtatctggggaggcaaaggtca 393
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 147 bits (74), Expect = 4e-32 Identities = 241/297 (81%), Gaps = 1/297 (0%) Strand = Plus / Plus Query: 222 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 281 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 282 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 341 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 342 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 401 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 402 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 461 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 462 ttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||||||||||| ||||||||| | || |||||| |||||||| ||||||||| Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatc-ctgggtatcgtgggaggcaa 508 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 48 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 101 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 102 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 158 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 159 agctcca 165 ||||||| Sbjct: 141 agctcca 147
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 123 bits (62), Expect = 6e-25 Identities = 240/298 (80%), Gaps = 1/298 (0%) Strand = Plus / Plus Query: 228 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 287 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 288 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 347 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 348 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 407 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 408 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 467 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 468 accctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 ||||| || ||||| ||| | || || |||| ||||||| ||||||||||| |||||| Sbjct: 520 acccttcctaacattaaggttcctcttatct-tgggtatttggggaggcaaaggtcaa 576
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 123 bits (62), Expect = 6e-25 Identities = 150/178 (84%), Gaps = 1/178 (0%) Strand = Plus / Plus Query: 348 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 407 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 408 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 467 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 468 accctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 | |||||||||||||| | ||||| |||| ||||||||||||||||||| |||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatct-tgggtatctggggaggcaaaggtcaa 572
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 674 Query: 519 gggtcaa 525 |||||| Sbjct: 675 aggtcaa 681
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 674 Query: 519 gggtcaa 525 |||||| Sbjct: 675 aggtcaa 681
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 703 Query: 519 gggtcaa 525 |||||| Sbjct: 704 aggtcaa 710
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 585 Query: 519 gggtcaa 525 |||||| Sbjct: 586 aggtcaa 592
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 500 Query: 519 gggtcaa 525 |||||| Sbjct: 501 aggtcaa 507
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 588 Query: 519 gggtcaa 525 |||||| Sbjct: 589 aggtcaa 595
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 577 Query: 519 gggtcaa 525 |||||| Sbjct: 578 aggtcaa 584
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 585 Query: 519 gggtcaa 525 |||||| Sbjct: 586 aggtcaa 592
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 588 Query: 519 gggtcaa 525 |||||| Sbjct: 589 aggtcaa 595
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 109 bits (55), Expect = 9e-21 Identities = 155/187 (82%), Gaps = 1/187 (0%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 459 aacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaa 518 |||||| |||| ||||| ||||||||| | ||||| || | ||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttat-tttgggtatatggggaggcaa 703 Query: 519 gggtcaa 525 |||||| Sbjct: 704 aggtcaa 710
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 99.6 bits (50), Expect = 9e-18 Identities = 99/114 (86%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 411 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 470 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 471 ctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtca 524 |||||||||||||||| || ||||| | ||||||||||||||||||| ||||| Sbjct: 147 ttgcccaacatcaagattcctctcat-tttgggtatctggggaggcaaaggtca 199
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 99.6 bits (50), Expect = 9e-18 Identities = 99/114 (86%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 408 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 467 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 468 accctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||| |||||||||||||| | || ||||| | | |||||||||||||||||||| Sbjct: 529 accttgcccaacatcaaggttcctctcat-tcttggtatctggggaggcaaggg 581 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 228 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 286 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 99.6 bits (50), Expect = 9e-18 Identities = 102/118 (86%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 408 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 467 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 468 accctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 | |||||||||||||| | |||||||| | ||||| ||||||||||||| |||||| Sbjct: 486 aaattgcccaacatcaaggttccactcat-tttgggtgtctggggaggcaaaggtcaa 542
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 97.6 bits (49), Expect = 4e-17 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand = Plus / Plus Query: 426 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 485 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 486 atcccactcatctatgggtatctggggaggcaa 518 | || |||||| ||||||||||||||||||| Sbjct: 82 gttcccctcatc-ctgggtatctggggaggcaa 113
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 97.6 bits (49), Expect = 4e-17 Identities = 104/121 (85%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 405 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 464 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 465 atgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtca 524 |||| |||||||||||||| | |||||||||| ||||| | ||||||||||| ||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatct-tgggtgtatggggaggcaaaggtca 552 Query: 525 a 525 | Sbjct: 553 a 553
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 97.6 bits (49), Expect = 4e-17 Identities = 101/117 (86%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 409 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 468 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 469 ccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 | |||||||||||||||| |||||||||| ||||| | |||||||||||||||||| Sbjct: 690 acttgcccaacatcaagataccactcatct-tgggtgtttggggaggcaagggtcaa 745
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 95.6 bits (48), Expect = 1e-16 Identities = 100/116 (86%), Gaps = 1/116 (0%) Strand = Plus / Plus Query: 410 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 469 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 470 cctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 | |||| ||||||||| | || ||||| | | ||||| |||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcat-tcttggtatttggggaggcaagggtcaa 270
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 93.7 bits (47), Expect = 5e-16 Identities = 122/147 (82%) Strand = Plus / Plus Query: 339 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 398 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 399 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 458 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 459 aacttcatgaccctgcccaacatcaag 485 |||||| |||| ||||| ||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaag 537
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 91.7 bits (46), Expect = 2e-15 Identities = 101/118 (85%), Gaps = 1/118 (0%) Strand = Plus / Plus Query: 408 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 467 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 468 accctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 || || |||||||| ||| | || ||||| | |||||||||||||||| || |||||| Sbjct: 536 actctccccaacataaaggttcctctcat-tttgggtatctggggaggtaaaggtcaa 592
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 87.7 bits (44), Expect = 3e-14 Identities = 114/136 (83%), Gaps = 1/136 (0%) Strand = Plus / Plus Query: 390 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 449 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 450 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctg 509 || |||| ||||||||| |||| || ||||| ||| | || || |||| ||||||| || Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatct-tgggtatttg 374 Query: 510 gggaggcaagggtcaa 525 ||||||||| |||||| Sbjct: 375 gggaggcaaaggtcaa 390
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 85.7 bits (43), Expect = 1e-13 Identities = 122/147 (82%), Gaps = 1/147 (0%) Strand = Plus / Plus Query: 379 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 438 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 439 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 498 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 499 atgggtatctggggaggcaagggtcaa 525 ||||||||||||||||||| |||||| Sbjct: 551 -tgggtatctggggaggcaaaggtcaa 576
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 85.7 bits (43), Expect = 1e-13 Identities = 122/147 (82%), Gaps = 1/147 (0%) Strand = Plus / Plus Query: 379 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 438 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 439 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 498 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 499 atgggtatctggggaggcaagggtcaa 525 ||||||||||||||||||| |||||| Sbjct: 551 -tgggtatctggggaggcaaaggtcaa 576
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 85.7 bits (43), Expect = 1e-13 Identities = 119/143 (83%), Gaps = 1/143 (0%) Strand = Plus / Plus Query: 379 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 438 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 439 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 498 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| | Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcat-t 554 Query: 499 atgggtatctggggaggcaaggg 521 | ||| |||||||||||||||| Sbjct: 555 cttggtgtctggggaggcaaggg 577
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 69/78 (88%) Strand = Plus / Plus Query: 408 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 467 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 468 accctgcccaacatcaag 485 || |||||||||||||| Sbjct: 533 acgttgcccaacatcaag 550
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 79.8 bits (40), Expect = 8e-12 Identities = 113/136 (83%), Gaps = 1/136 (0%) Strand = Plus / Plus Query: 390 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 449 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 450 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctg 509 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| || Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatc-ctgggtatttg 375 Query: 510 gggaggcaagggtcaa 525 ||||||||| |||||| Sbjct: 376 gggaggcaaaggtcaa 391
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 79.8 bits (40), Expect = 8e-12 Identities = 92/108 (85%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 417 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 476 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 477 aacatcaagatcccactcatctatgggtatctggggaggcaagggtca 524 ||||| ||| | || ||||||| ||||||| ||||||||||| ||||| Sbjct: 545 aacatgaaggttcctctcatct-tgggtatttggggaggcaaaggtca 591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 251 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 310 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 411 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 470 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 471 ctgcccaacatcaag 485 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 411 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 470 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 471 ctgcccaacatcaag 485 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 408 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 467 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 468 ac 469 || Sbjct: 66 ac 67
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 61.9 bits (31), Expect = 2e-06 Identities = 98/119 (82%), Gaps = 1/119 (0%) Strand = Plus / Plus Query: 407 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 466 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 467 gaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaagggtcaa 525 || | |||| ||||||||| | || || |||| ||||||| ||||||||||| |||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatct-tgggtatttggggaggcaaaggtcaa 631
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 407 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 466 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 467 gaccctgcccaacatcaag 485 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145 Score = 44.1 bits (22), Expect = 0.45 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 484 agatcccactcatctatgggtatctggggaggcaagggtcaa 525 |||| |||||||||| ||||| | |||||||||||||||||| Sbjct: 2238 agataccactcatct-tgggtgtttggggaggcaagggtcaa 2278
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 390 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 445 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 50.1 bits (25), Expect = 0.007 Identities = 95/117 (81%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 405 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 464 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 465 atgaccctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcc-tgggtatctggggtggcaaggg 1243
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 48.1 bits (24), Expect = 0.029 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 454 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatctatgggtatctgggga 513 |||| ||||||||| ||||||||| |||||| | || ||||| | ||||||||||||| Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcat-tctgggtatctggggt 464 Query: 514 ggcaaggg 521 |||||||| Sbjct: 465 ggcaaggg 472
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 253 ccgacgaccagcaggacatcacc 275 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 actcgctcttccaggcgcccac 316 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 110 gaagaagctcaagaagcaggtg 131 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 catggcagcggagaacatcg 204 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 atctccgacgaccagcaggacatc 272 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gcagcggagaacatcgacga 208 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 cccacgggcgacggcacccacgag 335 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcaagagctccaaggccaac 173 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ctgccttctcctccaccgtc 74 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 ccctgcccaacatcaagatc 488 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 catggcagcggagaacatcg 204 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 cccacgggcgacggcacccacgag 335 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ctgctgccttctcctccacc 71 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ctgctgccttctcctccacc 71 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ctgctgccttctcctccacc 71 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gaagaagctcaagaagcagg 129 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 40.1 bits (20), Expect = 7.1 Identities = 45/52 (86%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 470 cctgcccaacatcaagatcccactcatctatgggtatctggggaggcaaggg 521 ||||||||| |||||| | || ||||| | ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcat-tctgggtatctggggtggcaaggg 1684
>gb|AC125109.3| Mus musculus BAC clone RP24-232H5 from chromosome 3, complete sequence Length = 165361 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 495 atctatgggtatctggggaggcaa 518 |||||| ||||||||||||||||| Sbjct: 37102 atctataggtatctggggaggcaa 37079
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 ggcttctacatcgctcctgctttc 428 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 cccacgggcgacggcacccacgag 335 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ccagagggaagggcatcgtg 293 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gtccatctctccaaaaactt 463 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcaagagctccaaggccaac 173 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ccagagggaagggcatcgtg 293 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 ccctgcccaacatcaagatc 488 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 cccacgggcgacggcacccacgag 335 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 caaggccaacaggttcacagtcat 187 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cgatatctccgacgaccagc 264 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 ccctgcccaacatcaagatc 488 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 ggcttctacatcgctcctgctttc 428 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 caaggccaacaggttcacagtcat 187 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aagaagctcaagaagcaggt 130 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 ccctgcccaacatcaagatc 488 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 ccctgcccaacatcaagatc 488 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 cccacgggcgacggcacccacgag 335 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 tggctgctgccttctcctcc 68 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,047,683 Number of Sequences: 3902068 Number of extensions: 4047683 Number of successful extensions: 83817 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 83285 Number of HSP's gapped (non-prelim): 469 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
