>SF3A3_MOUSE (Q9D554) Splicing factor 3A subunit 3 (Spliceosome-associated|
           protein 61) (SAP 61) (SF3a60)
          Length = 501

 Score =  105 bits (261), Expect = 1e-22
 Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
 Frame = +3

Query: 120 RAAHEDXXXXXXXXXXXXXXXPANARDRLFQSHRVRHMLDLVVSTSDKLVEIYEDKDGAR 299
           R  HE+                +  RD++   HR R M D  +  S  L ++Y+DKDG R
Sbjct: 9   RRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLR 68

Query: 300 KDEMSTHLTAPVQTDIFPKYYERLKEIRDYHRRNQSARFVSESDDYEELLK--EEPT--- 464
           K+E++  ++ P +   F ++Y RLK+I+++HR++ +   V  S ++EELLK  E P+   
Sbjct: 69  KEELNA-ISGPNE---FAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEA 124

Query: 465 ---IEFTGEEAFGRYLDLHELYNEFINSKFGSLLEYSAYVGTFAQ 590
              +EFT EE +GRYLDLH+ Y ++IN K    L+Y  Y+  F Q
Sbjct: 125 QNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQ 169

>SF3A3_HUMAN (Q12874) Splicing factor 3A subunit 3 (Spliceosome-associated|
           protein 61) (SAP 61) (SF3a60)
          Length = 501

 Score =  105 bits (261), Expect = 1e-22
 Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
 Frame = +3

Query: 120 RAAHEDXXXXXXXXXXXXXXXPANARDRLFQSHRVRHMLDLVVSTSDKLVEIYEDKDGAR 299
           R  HE+                +  RD++   HR R M D  +  S  L ++Y+DKDG R
Sbjct: 9   RRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLR 68

Query: 300 KDEMSTHLTAPVQTDIFPKYYERLKEIRDYHRRNQSARFVSESDDYEELLK--EEPT--- 464
           K+E++  ++ P +   F ++Y RLK+I+++HR++ +   V  S ++EELLK  E P+   
Sbjct: 69  KEELNA-ISGPNE---FAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEA 124

Query: 465 ---IEFTGEEAFGRYLDLHELYNEFINSKFGSLLEYSAYVGTFAQ 590
              +EFT EE +GRYLDLH+ Y ++IN K    L+Y  Y+  F Q
Sbjct: 125 QNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQ 169

>NOI_DROME (O46106) Splicing factor 3A subunit 3 (Protein noisette)|
          Length = 503

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 45/162 (27%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
 Frame = +3

Query: 120 RAAHEDXXXXXXXXXXXXXXXPANARDRLFQSHRVRHMLDLVVSTSDKLVEIYEDKDGAR 299
           R  HE+                   ++R+   HR++++++L  +++ +L ++YEDKD  R
Sbjct: 9   RRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELHHNSTSQLRDLYEDKDNER 68

Query: 300 KDEMSTHLTAPVQTDIFPKYYERLKEIRDYHRRNQSARFVSESDDYEELLKE-------E 458
           K E++  L+ P +   F ++Y RLK+I+ +++ + +   V  S +++E+++         
Sbjct: 69  KAEIAA-LSGPNE---FNEFYARLKQIKQFYKSHPAEVSVPLSVEFDEMIRVYNNPDDMS 124

Query: 459 PTIEFTGEEAFGRYLDLHELYNEFINSKFGSLLEYSAYVGTF 584
             +EFT EE  GRYLDL+E Y  ++N +    L+Y  Y+ +F
Sbjct: 125 ALVEFTDEEGGGRYLDLNECYELYLNLRSVEKLDYITYLMSF 166

>RP34_BPSP1 (P06227) RNA polymerase sigma GP34 factor|
          Length = 197

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +3

Query: 348 FPKYYERLKEIRDYH-------RRNQSARFVSESDDYEELLKEEPTIEFTGEEAFGRYLD 506
           FP Y +R+ E+R YH       R N       +++D E L  ++   +   EE F R +D
Sbjct: 69  FPYYIKRMLELRTYHHITKYLKRINGETSLYVKNEDGEVLELQDTIADMHAEEIFSRIVD 128

Query: 507 LHEL 518
           LH +
Sbjct: 129 LHSI 132

>VE94_NPVAC (P08161) Early 94 kDa protein|
          Length = 803

 Score = 36.6 bits (83), Expect = 0.057
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
 Frame = +3

Query: 435 YEELLKEEPTIEFTGEEA---------FGRYLDLHELYNEFINS--KFGSLLEYSAYV 575
           Y+ LLK+  ++ F G+E          F R L LH+LY E + S  K+ +L EY  YV
Sbjct: 661 YDSLLKQLQSVHFNGQEITFEKCSRLDFNRILSLHKLYIECVKSLNKYPTLEEYQNYV 718

>FIG4_YEAST (P42837) Polyphosphoinositide phosphatase (EC 3.1.3.-)|
           (Phosphatidylinositol 3,5-bisphosphate 5-phosphatase)
           (Factor-induced gene 4)
          Length = 879

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 243 VVSTSDKLVEIYEDKDGA--RKDEMSTH--LTAPVQTDIFPKYYERLKEIRDY 389
           +V  ++   ++Y+D D      DEM+T   L AP    +  K+YE++  + DY
Sbjct: 792 LVDIAEDFTDVYDDDDDGDDENDEMTTEALLIAPDHVSVDEKFYEKVLNVDDY 844

>SCK2_SCHPO (Q10364) Serine/threonine-protein kinase sck2 (EC 2.7.11.1)|
          Length = 646

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +3

Query: 282 DKDGARKDEMSTH--LTAPVQTDIFPKYY---ERLKEIRDYHRRNQSARFVSESDDYEE 443
           D+D +  DEMST   L++ VQ       Y     + E   YH  N SA  +S  DDY +
Sbjct: 567 DRDFSSTDEMSTSAPLSSTVQNGFKGFTYIDASAMDEAFGYHNSNDSASSISSQDDYSK 625

>Y4WD_RHISN (P55682) Hypothetical transport protein y4wD|
          Length = 377

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
 Frame = -2

Query: 404 LIPSMVITNLFQPFIVLG--EDVSLHRRGKMGGHLILPSTVLVFIDFHQL---VGSG--- 249
           L+ ++ I  L  PF++L     +  H  G +G  L+LP++ L  +    L   +G G   
Sbjct: 164 LVTAVTIGGLLGPFLLLDWQSTIRTHESGAVG--LVLPNSGLFLVGLIALASGLGEGTAL 221

Query: 248 DDEIEHVTDAVGLEEAVARVG 186
           D    ++ D VG EE+ A +G
Sbjct: 222 DWSAVYLHDVVGTEESDAALG 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,047,083
Number of Sequences: 219361
Number of extensions: 1107518
Number of successful extensions: 3588
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3577
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)