| Clone Name | baal25n17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469565.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1833 Score = 414 bits (209), Expect = e-112 Identities = 425/497 (85%) Strand = Plus / Plus Query: 93 atggcgtcgtctgtgctggaggccacgcgggcggcgcacgaggacctcgagcggttggag 152 ||||||||| | ||||||||||| ||||||||| |||||||||| | ||| || ||||| Sbjct: 65 atggcgtcgacggtgctggaggcgacgcgggcgaagcacgaggacatggagaggctggag 124 Query: 153 cgcctggcggtgcgcgagcttcagcgcgaacccgccaacgcgcgcgaccgcctcttccag 212 || ||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||| Sbjct: 125 cggctggcggtgcgggagctgcagcgggagcccgccaacgcgcgcgaccgcctctaccag 184 Query: 213 tcccaccgcgtccgtcacatgctcgatctcgtcgtctccacttccgacaagctggtggaa 272 ||||||||||| || ||||||||||| |||||| ||||||| |||| |||||| |||||| Sbjct: 185 tcccaccgcgtgcgccacatgctcgacctcgtcatctccacctccggcaagctcgtggaa 244 Query: 273 atctatgaagacaaggacggtgctaggaaggatgagatgtccacccatcttaccgcgccg 332 ||||| || |||||||| |||||||||||||||||| |||| |||||||| | | Sbjct: 245 atctacgaggacaaggataatgctaggaaggatgagatctccaaccatcttagttccaca 304 Query: 333 gtgcaaactgacatcttccccaagtactatgaaaggctgaaagagattcgtgattaccat 392 |||||| |||| ||||| || |||| |||||| ||||| |||||||| |||||||||||| Sbjct: 305 gtgcaagctgaaatctttccaaagttctatgacaggctcaaagagatccgtgattaccat 364 Query: 393 agaaggaatcaatctgcccgcttcgtcagtgaaagtgatgattatgaggagctactaaag 452 || | |||| |||||||| ||||| |||| || |||||||| || |||||||||||| Sbjct: 365 aggcgtaatccttctgcccgtttcgttagtgcaactgatgatttcgaagagctactaaag 424 Query: 453 gaggaaccgactattgaattcactggcgaggaagcatttggccggtacttggacttacat 512 ||||||||| |||||||||||||||| |||||||| |||||||| ||| ||||||| ||| Sbjct: 425 gaggaaccggctattgaattcactggagaggaagcttttggccgatacctggacttgcat 484 Query: 513 gagctctataacgagttcataaattcaaagtttggatcactattggaatactcagcatac 572 ||||| || || |||||||||||||| ||||||||| | | | |||||||||||||||| Sbjct: 485 gagctttacaatgagttcataaattccaagtttggaactccaatggaatactcagcatat 544 Query: 573 gttggcacttttgctca 589 |||||||| ||| |||| Sbjct: 545 gttggcaccttttctca 561
>dbj|AK069120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004K20, full insert sequence Length = 1891 Score = 406 bits (205), Expect = e-110 Identities = 424/497 (85%) Strand = Plus / Plus Query: 93 atggcgtcgtctgtgctggaggccacgcgggcggcgcacgaggacctcgagcggttggag 152 ||||||||| | ||||||||||| ||||||||| |||||||||| | ||| || ||||| Sbjct: 123 atggcgtcgacggtgctggaggcgacgcgggcgaagcacgaggacatggagaggctggag 182 Query: 153 cgcctggcggtgcgcgagcttcagcgcgaacccgccaacgcgcgcgaccgcctcttccag 212 || ||||||||||| ||||| ||||| || ||||||||| ||||||||||||||| |||| Sbjct: 183 cggctggcggtgcgggagctgcagcgggagcccgccaacacgcgcgaccgcctctaccag 242 Query: 213 tcccaccgcgtccgtcacatgctcgatctcgtcgtctccacttccgacaagctggtggaa 272 ||||||||||| || ||||||||||| |||||| ||||||| |||| |||||| |||||| Sbjct: 243 tcccaccgcgtgcgccacatgctcgacctcgtcatctccacctccggcaagctcgtggaa 302 Query: 273 atctatgaagacaaggacggtgctaggaaggatgagatgtccacccatcttaccgcgccg 332 ||||| || |||||||| |||||||||||||||||| |||| |||||||| | | Sbjct: 303 atctacgaggacaaggataatgctaggaaggatgagatctccaaccatcttagttccaca 362 Query: 333 gtgcaaactgacatcttccccaagtactatgaaaggctgaaagagattcgtgattaccat 392 |||||| |||| ||||| || |||| |||||| ||||| |||||||| |||||||||||| Sbjct: 363 gtgcaagctgaaatctttccaaagttctatgacaggctcaaagagatccgtgattaccat 422 Query: 393 agaaggaatcaatctgcccgcttcgtcagtgaaagtgatgattatgaggagctactaaag 452 || | |||| |||||||| ||||| |||| || |||||||| || |||||||||||| Sbjct: 423 aggcgtaatccttctgcccgtttcgttagtgcaactgatgatttcgaagagctactaaag 482 Query: 453 gaggaaccgactattgaattcactggcgaggaagcatttggccggtacttggacttacat 512 ||||||||| |||||||||||||||| |||||||| |||||||| ||| ||||||| ||| Sbjct: 483 gaggaaccggctattgaattcactggagaggaagcttttggccgatacctggacttgcat 542 Query: 513 gagctctataacgagttcataaattcaaagtttggatcactattggaatactcagcatac 572 ||||| || || |||||||||||||| ||||||||| | | | |||||||||||||||| Sbjct: 543 gagctttacaatgagttcataaattccaagtttggaactccaatggaatactcagcatat 602 Query: 573 gttggcacttttgctca 589 |||||||| ||| |||| Sbjct: 603 gttggcaccttttctca 619
>gb|AY108853.1| Zea mays PCO085330 mRNA sequence Length = 901 Score = 192 bits (97), Expect = 9e-46 Identities = 190/221 (85%) Strand = Plus / Plus Query: 90 gccatggcgtcgtctgtgctggaggccacgcgggcggcgcacgaggacctcgagcggttg 149 ||||||||||| | ||||||||||| ||||||||||| || ||||| || ||| || || Sbjct: 185 gccatggcgtcaacggtgctggaggcgacgcgggcggcccatgaggatctggagaggctg 244 Query: 150 gagcgcctggcggtgcgcgagcttcagcgcgaacccgccaacgcgcgcgaccgcctcttc 209 ||||| || |||||| ||||||| || || || ||||| ||| |||| ||||||||||| Sbjct: 245 gagcggctcgcggtgagcgagctgcaacgggagcccgctaacccgcgtgaccgcctcttt 304 Query: 210 cagtcccaccgcgtccgtcacatgctcgatctcgtcgtctccacttccgacaagctggtg 269 ||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||| ||| Sbjct: 305 cagtcccaccgcgtccgccacatgctcgacctcgtcgtctccacctccggcaagctcgtg 364 Query: 270 gaaatctatgaagacaaggacggtgctaggaaggatgagat 310 ||||| || || ||||||||| |||||||||||||||||| Sbjct: 365 gaaatttacgaggacaaggacaatgctaggaaggatgagat 405 Score = 163 bits (82), Expect = 8e-37 Identities = 190/226 (84%) Strand = Plus / Plus Query: 353 caagtactatgaaaggctgaaagagattcgtgattaccatagaaggaatcaatctgcccg 412 |||||||||||||||||| |||||||| ||||| || ||| | |||| | ||||||||| Sbjct: 448 caagtactatgaaaggctcaaagagatccgtgaatatcatcggcggaacccatctgcccg 507 Query: 413 cttcgtcagtgaaagtgatgattatgaggagctactaaaggaggaaccgactattgaatt 472 ||| || ||| || |||||| ||||| ||||| |||||||||||||| ||||||||| Sbjct: 508 ctttgttagtacaactgatgactatgaagagcttctaaaggaggaaccagttattgaatt 567 Query: 473 cactggcgaggaagcatttggccggtacttggacttacatgagctctataacgagttcat 532 ||||||||||||| | |||||||| ||| | ||||| |||||||| ||||| |||||||| Sbjct: 568 cactggcgaggaaacttttggccgttaccttgacttgcatgagctttataatgagttcat 627 Query: 533 aaattcaaagtttggatcactattggaatactcagcatacgttggc 578 |||||| ||||| ||| |||| ||||||| ||||| || |||||| Sbjct: 628 aaattccaagttcggaacactgatggaatattcagcttatgttggc 673
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 176 bits (89), Expect = 5e-41 Identities = 152/173 (87%) Strand = Plus / Minus Query: 93 atggcgtcgtctgtgctggaggccacgcgggcggcgcacgaggacctcgagcggttggag 152 ||||||||| | ||||||||||| ||||||||| |||||||||| | ||| || ||||| Sbjct: 28750488 atggcgtcgacggtgctggaggcgacgcgggcgaagcacgaggacatggagaggctggag 28750429 Query: 153 cgcctggcggtgcgcgagcttcagcgcgaacccgccaacgcgcgcgaccgcctcttccag 212 || ||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||| Sbjct: 28750428 cggctggcggtgcgggagctgcagcgggagcccgccaacgcgcgcgaccgcctctaccag 28750369 Query: 213 tcccaccgcgtccgtcacatgctcgatctcgtcgtctccacttccgacaagct 265 ||||||||||| || ||||||||||| |||||| ||||||| |||| |||||| Sbjct: 28750368 tcccaccgcgtgcgccacatgctcgacctcgtcatctccacctccggcaagct 28750316 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 481 aggaagcatttggccggtacttggacttacatgagctctataacgagttcataaattcaa 540 ||||||| |||||||| ||| ||||||| |||||||| || || |||||||||||||| | Sbjct: 28748444 aggaagcttttggccgatacctggacttgcatgagctttacaatgagttcataaattcca 28748385 Query: 541 agtttggatcactattggaatactcagcatacgttggcacttttgctca 589 |||||||| | | | |||||||||||||||| |||||||| ||| |||| Sbjct: 28748384 agtttggaactccaatggaatactcagcatatgttggcaccttttctca 28748336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 93/108 (86%) Strand = Plus / Minus Query: 376 agattcgtgattaccatagaaggaatcaatctgcccgcttcgtcagtgaaagtgatgatt 435 |||| |||||||||||||| | |||| |||||||| ||||| |||| || |||||||| Sbjct: 28749216 agatccgtgattaccataggcgtaatccttctgcccgtttcgttagtgcaactgatgatt 28749157 Query: 436 atgaggagctactaaaggaggaaccgactattgaattcactggcgagg 483 || ||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 28749156 tcgaagagctactaaaggaggaaccggctattgaattcactggagagg 28749109 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 266 ggtggaaatctatgaagacaaggacggtgctaggaaggatgagatgtccacccatcttac 325 |||||||||||| || |||||||| |||||||||||||||||| |||| |||||||| Sbjct: 28749836 ggtggaaatctacgaggacaaggataatgctaggaaggatgagatctccaaccatcttag 28749777 Query: 326 cgcgccggtgcaaactgacatcttccccaagtactatgaaaggctgaaagag 377 | | |||||| |||| ||||| || |||| |||||| ||||| |||||| Sbjct: 28749776 ttccacagtgcaagctgaaatctttccaaagttctatgacaggctcaaagag 28749725
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 176 bits (89), Expect = 5e-41 Identities = 152/173 (87%) Strand = Plus / Minus Query: 93 atggcgtcgtctgtgctggaggccacgcgggcggcgcacgaggacctcgagcggttggag 152 ||||||||| | ||||||||||| ||||||||| |||||||||| | ||| || ||||| Sbjct: 28841812 atggcgtcgacggtgctggaggcgacgcgggcgaagcacgaggacatggagaggctggag 28841753 Query: 153 cgcctggcggtgcgcgagcttcagcgcgaacccgccaacgcgcgcgaccgcctcttccag 212 || ||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||| Sbjct: 28841752 cggctggcggtgcgggagctgcagcgggagcccgccaacgcgcgcgaccgcctctaccag 28841693 Query: 213 tcccaccgcgtccgtcacatgctcgatctcgtcgtctccacttccgacaagct 265 ||||||||||| || ||||||||||| |||||| ||||||| |||| |||||| Sbjct: 28841692 tcccaccgcgtgcgccacatgctcgacctcgtcatctccacctccggcaagct 28841640 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 481 aggaagcatttggccggtacttggacttacatgagctctataacgagttcataaattcaa 540 ||||||| |||||||| ||| ||||||| |||||||| || || |||||||||||||| | Sbjct: 28839768 aggaagcttttggccgatacctggacttgcatgagctttacaatgagttcataaattcca 28839709 Query: 541 agtttggatcactattggaatactcagcatacgttggcacttttgctca 589 |||||||| | | | |||||||||||||||| |||||||| ||| |||| Sbjct: 28839708 agtttggaactccaatggaatactcagcatatgttggcaccttttctca 28839660 Score = 95.6 bits (48), Expect = 2e-16 Identities = 93/108 (86%) Strand = Plus / Minus Query: 376 agattcgtgattaccatagaaggaatcaatctgcccgcttcgtcagtgaaagtgatgatt 435 |||| |||||||||||||| | |||| |||||||| ||||| |||| || |||||||| Sbjct: 28840540 agatccgtgattaccataggcgtaatccttctgcccgtttcgttagtgcaactgatgatt 28840481 Query: 436 atgaggagctactaaaggaggaaccgactattgaattcactggcgagg 483 || ||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 28840480 tcgaagagctactaaaggaggaaccggctattgaattcactggagagg 28840433 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 266 ggtggaaatctatgaagacaaggacggtgctaggaaggatgagatgtccacccatcttac 325 |||||||||||| || |||||||| |||||||||||||||||| |||| |||||||| Sbjct: 28841160 ggtggaaatctacgaggacaaggataatgctaggaaggatgagatctccaaccatcttag 28841101 Query: 326 cgcgccggtgcaaactgacatcttccccaagtactatgaaaggctgaaagag 377 | | |||||| |||| ||||| || |||| |||||| ||||| |||||| Sbjct: 28841100 ttccacagtgcaagctgaaatctttccaaagttctatgacaggctcaaagag 28841049
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 176 bits (89), Expect = 5e-41 Identities = 152/173 (87%) Strand = Plus / Minus Query: 93 atggcgtcgtctgtgctggaggccacgcgggcggcgcacgaggacctcgagcggttggag 152 ||||||||| | ||||||||||| ||||||||| |||||||||| | ||| || ||||| Sbjct: 57469 atggcgtcgacggtgctggaggcgacgcgggcgaagcacgaggacatggagaggctggag 57410 Query: 153 cgcctggcggtgcgcgagcttcagcgcgaacccgccaacgcgcgcgaccgcctcttccag 212 || ||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||| Sbjct: 57409 cggctggcggtgcgggagctgcagcgggagcccgccaacgcgcgcgaccgcctctaccag 57350 Query: 213 tcccaccgcgtccgtcacatgctcgatctcgtcgtctccacttccgacaagct 265 ||||||||||| || ||||||||||| |||||| ||||||| |||| |||||| Sbjct: 57349 tcccaccgcgtgcgccacatgctcgacctcgtcatctccacctccggcaagct 57297 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 481 aggaagcatttggccggtacttggacttacatgagctctataacgagttcataaattcaa 540 ||||||| |||||||| ||| ||||||| |||||||| || || |||||||||||||| | Sbjct: 55425 aggaagcttttggccgatacctggacttgcatgagctttacaatgagttcataaattcca 55366 Query: 541 agtttggatcactattggaatactcagcatacgttggcacttttgctca 589 |||||||| | | | |||||||||||||||| |||||||| ||| |||| Sbjct: 55365 agtttggaactccaatggaatactcagcatatgttggcaccttttctca 55317 Score = 95.6 bits (48), Expect = 2e-16 Identities = 93/108 (86%) Strand = Plus / Minus Query: 376 agattcgtgattaccatagaaggaatcaatctgcccgcttcgtcagtgaaagtgatgatt 435 |||| |||||||||||||| | |||| |||||||| ||||| |||| || |||||||| Sbjct: 56197 agatccgtgattaccataggcgtaatccttctgcccgtttcgttagtgcaactgatgatt 56138 Query: 436 atgaggagctactaaaggaggaaccgactattgaattcactggcgagg 483 || ||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 56137 tcgaagagctactaaaggaggaaccggctattgaattcactggagagg 56090 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 266 ggtggaaatctatgaagacaaggacggtgctaggaaggatgagatgtccacccatcttac 325 |||||||||||| || |||||||| |||||||||||||||||| |||| |||||||| Sbjct: 56817 ggtggaaatctacgaggacaaggataatgctaggaaggatgagatctccaaccatcttag 56758 Query: 326 cgcgccggtgcaaactgacatcttccccaagtactatgaaaggctgaaagag 377 | | |||||| |||| ||||| || |||| |||||| ||||| |||||| Sbjct: 56757 ttccacagtgcaagctgaaatctttccaaagttctatgacaggctcaaagag 56706
>gb|BT018484.1| Zea mays clone EL01N0424D05.d mRNA sequence Length = 1383 Score = 117 bits (59), Expect = 4e-23 Identities = 146/175 (83%) Strand = Plus / Plus Query: 404 atctgcccgcttcgtcagtgaaagtgatgattatgaggagctactaaaggaggaaccgac 463 |||||||||||| || ||| || |||||| ||||| ||||| |||||||||||||| Sbjct: 13 atctgcccgctttgttagtacaactgatgactatgaagagcttctaaaggaggaaccagt 72 Query: 464 tattgaattcactggcgaggaagcatttggccggtacttggacttacatgagctctataa 523 |||||||||||||||||||||| | |||||||| ||| | ||||| |||||||| ||||| Sbjct: 73 tattgaattcactggcgaggaaacttttggccgttaccttgacttgcatgagctttataa 132 Query: 524 cgagttcataaattcaaagtttggatcactattggaatactcagcatacgttggc 578 |||||||| ||||| ||| | ||| |||| ||||||| ||||| || |||||| Sbjct: 133 tgagttcattaattccaaggtgggaacactgatggaatattcagcttatgttggc 187
>gb|AY664419.1| Zea mays cultivar Mo17 locus 9009, complete sequence Length = 405672 Score = 111 bits (56), Expect = 3e-21 Identities = 137/164 (83%) Strand = Plus / Minus Query: 90 gccatggcgtcgtctgtgctggaggccacgcgggcggcgcacgaggacctcgagcggttg 149 ||||||||||| | ||||||||||| ||| ||| ||| || |||||| | ||| || || Sbjct: 112523 gccatggcgtcaacggtgctggaggcgacgagggtggcccatgaggacttggagaggctg 112464 Query: 150 gagcgcctggcggtgcgcgagcttcagcgcgaacccgccaacgcgcgcgaccgcctcttc 209 |||||||| |||| ||||||||| || | || |||| ||| ||||||||||| | || Sbjct: 112463 gagcgcctcgcggcgcgcgagctgcaatgggagcccgataacccgcgcgaccgctttttt 112404 Query: 210 cagtcccaccgcgtccgtcacatgctcgatctcgtcgtctccac 253 ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 112403 cagtcccaccgcgtccgccacatgctcgacctcgtcgtctccac 112360 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 504 gacttacatgagctctataacgagttcataaattcaaagtttggatcactattggaatac 563 ||||| |||||||| |||||||||||||||||||| ||||||||| | ||| |||||||| Sbjct: 111128 gacttgcatgagctttataacgagttcataaattccaagtttggaacgctaatggaatac 111069 Query: 564 tc 565 || Sbjct: 111068 tc 111067
>ref|XM_481724.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1122 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 232 tgctcgatctcgtcgtctccact 254 ||||||||||||||||||||||| Sbjct: 572 tgctcgatctcgtcgtctccact 550
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 232 tgctcgatctcgtcgtctccact 254 ||||||||||||||||||||||| Sbjct: 15009941 tgctcgatctcgtcgtctccact 15009963
>dbj|AP004706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0683E12 Length = 165766 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 232 tgctcgatctcgtcgtctccact 254 ||||||||||||||||||||||| Sbjct: 193 tgctcgatctcgtcgtctccact 215
>dbj|AP004621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689D06 Length = 146551 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 232 tgctcgatctcgtcgtctccact 254 ||||||||||||||||||||||| Sbjct: 8855 tgctcgatctcgtcgtctccact 8877
>ref|XM_367392.1| Magnaporthe grisea 70-15 hypothetical protein (MG07317.4) partial mRNA Length = 2088 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 cgaggacctcgagcggttgga 151 ||||||||||||||||||||| Sbjct: 1236 cgaggacctcgagcggttgga 1256
>gb|AC124998.10| Mus musculus chromosome 10, clone RP24-350B12, complete sequence Length = 185801 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 actatgaaaggctgaaagaga 378 ||||||||||||||||||||| Sbjct: 112782 actatgaaaggctgaaagaga 112802
>emb|CR713709.2|CNS0GDND Tetraodon nigroviridis full-length cDNA Length = 1145 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 528 ttcataaattcaaagtttggatcac 552 ||||||||| ||||||||||||||| Sbjct: 501 ttcataaatgcaaagtttggatcac 477
>gb|AC109136.1| Homo sapiens chromosome 16 clone RP11-629D22, complete sequence Length = 183080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 574 ttggcacttttgctcagactg 594 ||||||||||||||||||||| Sbjct: 83495 ttggcacttttgctcagactg 83515
>emb|AL772184.3| Tetraodon DNA sequence from clone XX-C0AA012DF08, complete sequence Length = 69520 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 528 ttcataaattcaaagtttggatcac 552 ||||||||| ||||||||||||||| Sbjct: 45773 ttcataaatgcaaagtttggatcac 45749
>gb|AC112633.6| Rattus norvegicus 11 BAC CH230-200K21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230130 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 gtgcaaactgacatcttccc 352 |||||||||||||||||||| Sbjct: 606 gtgcaaactgacatcttccc 587
>gb|AC140182.2| Mus musculus BAC clone RP24-349I16 from chromosome 8, complete sequence Length = 151221 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ttttgctcagactgaaaaaa 600 |||||||||||||||||||| Sbjct: 67905 ttttgctcagactgaaaaaa 67924
>gb|AC123826.4| Mus musculus BAC clone RP24-97K3 from chromosome 8, complete sequence Length = 188704 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ttttgctcagactgaaaaaa 600 |||||||||||||||||||| Sbjct: 11109 ttttgctcagactgaaaaaa 11128
>emb|Z95397.2|SPBC25H2 S.pombe chromosome II cosmid c25H2 Length = 38585 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 aattcaaagtttggatcact 553 |||||||||||||||||||| Sbjct: 18657 aattcaaagtttggatcact 18676
>emb|Z26255.1|TPNARHPAR T.pantotropha putative narG, H, J, I genes Length = 3184 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 cctggcggtgcgcgagcttc 174 |||||||||||||||||||| Sbjct: 3113 cctggcggtgcgcgagcttc 3132
>gb|AE012167.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 75 of 460 of the complete genome Length = 10579 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 acccgccaacgcgcgcgacc 201 |||||||||||||||||||| Sbjct: 5418 acccgccaacgcgcgcgacc 5437
>ref|NM_136694.1| Drosophila melanogaster CG15863-RA (CG15863), mRNA Length = 399 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 aaagtttggatcactattgg 558 |||||||||||||||||||| Sbjct: 160 aaagtttggatcactattgg 179
>dbj|AK146028.1| Mus musculus 14 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I530025B16 product:Hypothetical SPla and the RYanodine receptor, full insert sequence Length = 3093 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ttttgctcagactgaaaaaa 600 |||||||||||||||||||| Sbjct: 1573 ttttgctcagactgaaaaaa 1592
>dbj|AK166167.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830002H19 product:Hypothetical SPla and the RYanodine receptor, full insert sequence Length = 3092 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 581 ttttgctcagactgaaaaaa 600 |||||||||||||||||||| Sbjct: 1584 ttttgctcagactgaaaaaa 1603
>gb|AC007414.6| Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR06J01, complete sequence Length = 172904 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 aaagtttggatcactattgg 558 |||||||||||||||||||| Sbjct: 14359 aaagtttggatcactattgg 14340
>gb|BT023615.1| Drosophila melanogaster IP05962 full insert cDNA Length = 550 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 aaagtttggatcactattgg 558 |||||||||||||||||||| Sbjct: 183 aaagtttggatcactattgg 202
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 acccgccaacgcgcgcgacc 201 |||||||||||||||||||| Sbjct: 4211647 acccgccaacgcgcgcgacc 4211628
>gb|AC007413.5|AC007413 Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR01L01, complete sequence Length = 160301 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 aaagtttggatcactattgg 558 |||||||||||||||||||| Sbjct: 125806 aaagtttggatcactattgg 125787
>gb|AE003831.3| Drosophila melanogaster chromosome 2R, section 19 of 73 of the complete sequence Length = 275390 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 aaagtttggatcactattgg 558 |||||||||||||||||||| Sbjct: 111652 aaagtttggatcactattgg 111633
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cgagcggttggagcgcctgg 159 |||||||||||||||||||| Sbjct: 308687 cgagcggttggagcgcctgg 308668 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,044,026 Number of Sequences: 3902068 Number of extensions: 4044026 Number of successful extensions: 75133 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74891 Number of HSP's gapped (non-prelim): 241 length of query: 603 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 580 effective length of database: 17,143,297,704 effective search space: 9943112668320 effective search space used: 9943112668320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)