>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 238     ccatgaagctgctcaaggtcga 259
               ||||||||||||||||||||||
Sbjct: 1372942 ccatgaagctgctcaaggtcga 1372963

>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 360    atgccgcacgcacgcgacggca 381
              ||||||||||||||||||||||
Sbjct: 297010 atgccgcacgcacgcgacggca 296989

>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 360    atgccgcacgcacgcgacggca 381
              ||||||||||||||||||||||
Sbjct: 301663 atgccgcacgcacgcgacggca 301642

>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 360    atgccgcacgcacgcgacggca 381
              ||||||||||||||||||||||
Sbjct: 261983 atgccgcacgcacgcgacggca 261962

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 238     ccatgaagctgctcaaggtcga 259
               ||||||||||||||||||||||
Sbjct: 3681003 ccatgaagctgctcaaggtcga 3680982

>gb|AE011749.1| Xanthomonas axonopodis pv. citri str. 306,  section 127 of 469 of the
            complete genome
          Length = 10945

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 238  ccatgaagctgctcaaggtcga 259
            ||||||||||||||||||||||
Sbjct: 6081 ccatgaagctgctcaaggtcga 6102

>gb|AE012208.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 116
            of 460 of the complete genome
          Length = 10029

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 238  ccatgaagctgctcaaggtcga 259
            ||||||||||||||||||||||
Sbjct: 8239 ccatgaagctgctcaaggtcga 8260

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 238     ccatgaagctgctcaaggtcga 259
               ||||||||||||||||||||||
Sbjct: 3765037 ccatgaagctgctcaaggtcga 3765016

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 238     ccatgaagctgctcaaggtcga 259
               ||||||||||||||||||||||
Sbjct: 3674855 ccatgaagctgctcaaggtcga 3674834

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 353    cgcgatgatgccgcacgcacg 373
              |||||||||||||||||||||
Sbjct: 737587 cgcgatgatgccgcacgcacg 737567

>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15,
            complete sequence
          Length = 185021

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 317  cattggtgggtatgagtggga 337
            |||||||||||||||||||||
Sbjct: 9131 cattggtgggtatgagtggga 9111

>gb|AC121867.2| Mus musculus BAC clone RP24-115M7 from 6, complete sequence
          Length = 165179

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 280    ccatgggcaacgaggactgca 300
              |||||||||||||||||||||
Sbjct: 120400 ccatgggcaacgaggactgca 120380

>gb|AC123704.21| Mus musculus chromosome 15, clone RP23-351F24, complete sequence
          Length = 202330

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 491   tgaagaaaagagtgtgtcatg 511
             |||||||||||||||||||||
Sbjct: 89784 tgaagaaaagagtgtgtcatg 89764

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 317      cattggtgggtatgagtggga 337
                |||||||||||||||||||||
Sbjct: 11686343 cattggtgggtatgagtggga 11686323

>emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in linkage group 22,
             complete sequence
          Length = 189327

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 301   tcaagtccacccacagcattg 321
             |||||||||||||||||||||
Sbjct: 45006 tcaagtccacccacagcattg 45026

>emb|AL929135.9| Zebrafish DNA sequence from clone CH211-125A22, complete sequence
          Length = 167531

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 301   tcaagtccacccacagcattg 321
             |||||||||||||||||||||
Sbjct: 98917 tcaagtccacccacagcattg 98897

>gb|AC135018.3| Mus musculus BAC clone RP23-124G8 from 6, complete sequence
          Length = 192911

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   ccatgggcaacgaggactgca 300
             |||||||||||||||||||||
Sbjct: 90912 ccatgggcaacgaggactgca 90932

>gb|AC153728.1| Mus musculus  BAC RP23-83N17 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226417

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    aagagtgtgtcatgtatatt 517
              ||||||||||||||||||||
Sbjct: 222255 aagagtgtgtcatgtatatt 222274

>gb|AC113201.15| Mus musculus chromosome 6, clone RP23-271G7, complete sequence
          Length = 205816

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  aagagtgtgtcatgtatatt 517
            ||||||||||||||||||||
Sbjct: 6976 aagagtgtgtcatgtatatt 6995

>gb|AC162901.4| Mus musculus BAC clone RP23-417K5 from chromosome 8, complete sequence
          Length = 205244

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 173    aagtgttccctatccaatcttcaccatg 200
              ||||||||||||||||  ||||||||||
Sbjct: 191870 aagtgttccctatccacccttcaccatg 191897

>ref|XM_543806.2| PREDICTED: Canis familiaris similar to G-protein coupled receptor
           family C group 5 member D (LOC486679), mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 gaggactgcatcaagtccac 310
           ||||||||||||||||||||
Sbjct: 259 gaggactgcatcaagtccac 278

>ref|XM_756783.1| Ustilago maydis 521 hypothetical protein (UM05729.1) partial mRNA
          Length = 897

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 tgccaccaaaaccatgggca 288
           ||||||||||||||||||||
Sbjct: 387 tgccaccaaaaccatgggca 406

>gb|AC123797.3| Mus musculus BAC clone RP24-326O4 from chromosome 9, complete sequence
          Length = 135119

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gccccccttttcctccctgt 69
             ||||||||||||||||||||
Sbjct: 21227 gccccccttttcctccctgt 21246

>gb|AC139034.7| Mus musculus chromosome 6, clone RP23-350J11, complete sequence
          Length = 247394

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    aagagtgtgtcatgtatatt 517
              ||||||||||||||||||||
Sbjct: 173182 aagagtgtgtcatgtatatt 173201

>emb|X95590.1|HSHTPVI H.salinarium htpVI gene
          Length = 2535

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 cgacggcaccccgtgggtgg 393
           ||||||||||||||||||||
Sbjct: 913 cgacggcaccccgtgggtgg 932

>gb|AC155807.3| Mus musculus BAC clone RP24-303N21 from chromosome 8, complete sequence
          Length = 167996

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 173   aagtgttccctatccaatcttcaccatg 200
             ||||||||||||||||  ||||||||||
Sbjct: 36673 aagtgttccctatccacccttcaccatg 36700

>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   ccaccaaaaccatgggcaac 290
             ||||||||||||||||||||
Sbjct: 48008 ccaccaaaaccatgggcaac 48027

>gb|AE005022.1| Halobacterium sp. NRC-1 section 53 of 170 of the complete genome
          Length = 11515

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 374  cgacggcaccccgtgggtgg 393
            ||||||||||||||||||||
Sbjct: 7944 cgacggcaccccgtgggtgg 7925

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 359     gatgccgcacgcacgcgacggcac 382
               ||||||||||||||||| ||||||
Sbjct: 1312963 gatgccgcacgcacgcgccggcac 1312940

>gb|AC132480.5| Mus musculus BAC clone RP23-11I14 from 6, complete sequence
          Length = 230313

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 498   aagagtgtgtcatgtatatt 517
             ||||||||||||||||||||
Sbjct: 64624 aagagtgtgtcatgtatatt 64605

>gb|U75438.1|HSU75438 Halobacterium salinarium transducer HtD protein (HtD) gene,
           complete cds
          Length = 2500

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 374 cgacggcaccccgtgggtgg 393
           ||||||||||||||||||||
Sbjct: 877 cgacggcaccccgtgggtgg 896

>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b,
             complete sequence
          Length = 126514

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   ccaagttcccaaccaaagag 170
             ||||||||||||||||||||
Sbjct: 59226 ccaagttcccaaccaaagag 59245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,633,960
Number of Sequences: 3902068
Number of extensions: 3633960
Number of successful extensions: 62375
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62100
Number of HSP's gapped (non-prelim): 275
length of query: 532
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 509
effective length of database: 17,143,297,704
effective search space: 8725938531336
effective search space used: 8725938531336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)