ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal26b15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 543 e-151
2gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 509 e-141
3gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 440 e-120
4gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 260 2e-66
5gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 228 9e-57
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 222 5e-55
7gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 172 4e-40
8dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 172 4e-40
9dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 4e-40
10dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 4e-40
11dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 4e-40
12dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 4e-40
13dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 172 4e-40
14dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 165 1e-37
15gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 119 6e-24
16gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 119 6e-24
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 119 6e-24
19gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 92 1e-15
20gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 92 1e-15
21gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 88 2e-14
22dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
23gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 80 5e-12
24gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph... 64 3e-07
25gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 58 2e-05
26gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 58 2e-05
27gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 58 2e-05
28gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA... 54 3e-04
29gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 46 0.068
30emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car... 44 0.27
31gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 44 0.27
32emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA 42 1.1
33emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA 42 1.1
34emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA 42 1.1
35emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA 42 1.1
36emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA 42 1.1
37gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 4.2
38gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ... 40 4.2
39gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t... 40 4.2
40gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 4.2
41ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot... 40 4.2
42ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop... 40 4.2
43gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 4.2
44gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 4.2
45gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro... 40 4.2
46ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h... 40 4.2
47gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite... 40 4.2
48gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite... 40 4.2
49ref|XM_754413.1| Ustilago maydis 521 hypothetical protein (UM033... 40 4.2
50ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 4.2
51gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro... 40 4.2
52emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch... 40 4.2
53gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co... 40 4.2
54gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co... 40 4.2
55emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ... 40 4.2
56dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023... 40 4.2
57gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4... 40 4.2
58gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com... 40 4.2
59gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co... 40 4.2
60gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana... 40 4.2
61dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 4.2
62gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.... 40 4.2
63gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana... 40 4.2
64emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.2
65gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple... 40 4.2
66gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc... 40 4.2
67dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds 40 4.2
68gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 40 4.2
69emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein... 40 4.2 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  543 bits (274), Expect = e-151
 Identities = 304/310 (98%), Gaps = 3/310 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gcacagccgcgcgcatcc-ccgttgctagcaaggtcgacca-gcagcacagagatggctg 67
           |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 90  gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 148

                                                                       
Query: 68  ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaaga 208

                                                                       
Query: 128 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaaca 268

                                                                       
Query: 188 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagg 328

                                                                       
Query: 248 gtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 307
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtgg 388

                     
Query: 308 actcgctctt 317
           ||||||||||
Sbjct: 389 actcgctctt 398
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  509 bits (257), Expect = e-141
 Identities = 292/301 (97%), Gaps = 2/301 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  cgcgcatcc-ccgttgctagcaaggtcgacca-gcagcacagagatggctgctgccttct 76
           ||||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 18  cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77

                                                                       
Query: 77  cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaaga 136
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaaga 137

                                                                       
Query: 137 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacag 196
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 138 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacgg 197

                                                                       
Query: 197 tcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 256
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 257

                                                                       
Query: 257 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctct 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctct 317

            
Query: 317 t 317
           |
Sbjct: 318 t 318
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  440 bits (222), Expect = e-120
 Identities = 222/222 (100%)
 Strand = Plus / Plus

                                                                        
Query: 96   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 156  gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 216  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                      
Query: 276  gcaggacatcaccagagggaagggcatcgtggactcgctctt 317
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctctt 5739



 Score =  131 bits (66), Expect = 1e-27
 Identities = 87/90 (96%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                        
Query: 10   gcacagccgcgcgcatcc-ccgttgctagcaaggtcgacca-gcagcacagagatggctg 67
            |||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 5310 gcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctg 5368

                                          
Query: 68   ctgccttctcctccaccgtcggggctccgg 97
            ||||||||||||||||||||||||||||||
Sbjct: 5369 ctgccttctcctccaccgtcggggctccgg 5398



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                        
Query: 240  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                        
Query: 300  catcgtggactc 311
            ||||||||||||
Sbjct: 2999 catcgtggactc 3010
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  260 bits (131), Expect = 2e-66
 Identities = 140/143 (97%)
 Strand = Plus / Plus

                                                                       
Query: 175 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                  
Query: 295 aagggcatcgtggactcgctctt 317
           |||||||||||||||||||||||
Sbjct: 121 aagggcatcgtggactcgctctt 143
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  228 bits (115), Expect = 9e-57
 Identities = 139/147 (94%)
 Strand = Plus / Plus

                                                                       
Query: 57  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 116
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 117 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 176
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                      
Query: 177 caaggccaacaggttcacagtcatggc 203
           |||||||||||||||||| ||||||||
Sbjct: 196 caaggccaacaggttcaccgtcatggc 222



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                            
Query: 295 aagggcatcgtggactc 311
           ||||| ||||| |||||
Sbjct: 317 aagggtatcgtcgactc 333
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  222 bits (112), Expect = 5e-55
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 57  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 116
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 117 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 176
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                      
Query: 177 caaggccaacaggttcacagtcatggc 203
           |||||||||||||||||| ||||||||
Sbjct: 186 caaggccaacaggttcaccgtcatggc 212



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 70/77 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                            
Query: 295 aagggcatcgtggactc 311
           ||||| ||||| |||||
Sbjct: 307 aagggtatcgtcgactc 323
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  172 bits (87), Expect = 4e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                
Query: 295 aaggg 299
           |||||
Sbjct: 272 aaggg 276
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  172 bits (87), Expect = 4e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                
Query: 295 aaggg 299
           |||||
Sbjct: 264 aaggg 268
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  172 bits (87), Expect = 4e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                
Query: 295 aaggg 299
           |||||
Sbjct: 312 aaggg 316
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  172 bits (87), Expect = 4e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                
Query: 295 aaggg 299
           |||||
Sbjct: 300 aaggg 304
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  172 bits (87), Expect = 4e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                
Query: 295 aaggg 299
           |||||
Sbjct: 301 aaggg 305
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  172 bits (87), Expect = 4e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                
Query: 295 aaggg 299
           |||||
Sbjct: 300 aaggg 304
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  172 bits (87), Expect = 4e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                
Query: 295 aaggg 299
           |||||
Sbjct: 299 aaggg 303
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  165 bits (83), Expect = 1e-37
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 59  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 118
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 119 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 178
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 179 aggccaacaggttca 193
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                
Query: 295 aaggg 299
           |||||
Sbjct: 305 aaggg 309
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 106    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 166    ggcaagagctccaaggccaacaggttca 193
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                          
Query: 240    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                          
Query: 300    catcgtggactc 311
              | |||| |||||
Sbjct: 113145 cctcgtcgactc 113134



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                          
Query: 235    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                   
Query: 295    aaggg 299
              |||||
Sbjct: 109646 aaggg 109642



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 59     agatggctgctgccttctcctccaccgtcggggctccgg 97
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 106   ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 166   ggcaagagctccaaggccaacaggttca 193
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                         
Query: 240   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                         
Query: 300   catcgtggactc 311
             | |||| |||||
Sbjct: 35022 cctcgtcgactc 35011



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 235   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                  
Query: 295   aaggg 299
             |||||
Sbjct: 31523 aaggg 31519



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 59    agatggctgctgccttctcctccaccgtcggggctccgg 97
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 106      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 166      ggcaagagctccaaggccaacaggttca 193
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                            
Query: 240      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                            
Query: 300      catcgtggactc 311
                | |||| |||||
Sbjct: 28308284 cctcgtcgactc 28308273



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 235      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                     
Query: 295      aaggg 299
                |||||
Sbjct: 28304785 aaggg 28304781



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 59       agatggctgctgccttctcctccaccgtcggggctccgg 97
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  119 bits (60), Expect = 6e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 106      ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 165
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 166      ggcaagagctccaaggccaacaggttca 193
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                            
Query: 240      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                            
Query: 300      catcgtggactc 311
                | |||| |||||
Sbjct: 28290733 cctcgtcgactc 28290722



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 235      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                     
Query: 295      aaggg 299
                |||||
Sbjct: 28287234 aaggg 28287230



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 59       agatggctgctgccttctcctccaccgtcggggctccgg 97
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
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>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 61  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 114
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 115 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 171
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 172 agctcca 178
           |||||||
Sbjct: 141 agctcca 147



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                      
Query: 295 aagggcatcgt 305
           |||||| ||||
Sbjct: 273 aagggcctcgt 283
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>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 61  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 114
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 115 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 171
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 172 agctcca 178
           |||||||
Sbjct: 141 agctcca 147



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                      
Query: 295 aagggcatcgt 305
           |||||| ||||
Sbjct: 273 aagggcctcgt 283
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>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 65/72 (90%)
 Strand = Plus / Plus

                                                                       
Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                       
Query: 300 catcgtggactc 311
           ||||||||||||
Sbjct: 277 catcgtggactc 288



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 119
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 120 cgggaagaagctcaagaagcagg 142
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 235 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 294
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                
Query: 295 aaggg 299
           |||||
Sbjct: 84  aaggg 88
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>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                       
Query: 240 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                       
Query: 300 catcgtggactc 311
           ||||||||||||
Sbjct: 430 catcgtggactc 441
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>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 241 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 296
           |||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 271 gaccagcaggacatcaccagagggaagggcatcgtggactc 311
           |||||||||||||||||||| ||||||||||| || |||||
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactc 275
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 271 gaccagcaggacatcaccagagggaagggcatcgtggactc 311
           |||||||||||||||||||| ||||||||||| || |||||
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactc 138
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 271 gaccagcaggacatcaccagagggaagggcatcgtggactc 311
           |||||||||||||||||||| ||||||||||| || |||||
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactc 168
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>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 241 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 299
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 266     ccgacgaccagcaggacatcacc 288
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
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>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 264 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctctt 317
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctctt 372
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 123    gaagaagctcaagaagcaggtg 144
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
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>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 51  cagcacagagatggctgctgc 71
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511
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>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 51  cagcacagagatggctgctgc 71
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521
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>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 51  cagcacagagatggctgctgc 71
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575
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>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 51  cagcacagagatggctgctgc 71
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912
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>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 51  cagcacagagatggctgctgc 71
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589
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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     catggcagcggagaacatcg 217
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875
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>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
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>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 262  atctccgacgaccagcaggacatc 285
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    gcagcggagaacatcgacga 221
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393
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>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  gcaagagctccaaggccaac 186
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290
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>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747
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>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     ctgccttctcctccaccgtc 87
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842
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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 198     catggcagcggagaacatcg 217
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736
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>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703
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>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   ctgctgccttctcctccacc 84
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989
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>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 65 ctgctgccttctcctccacc 84
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46
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>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 65 ctgctgccttctcctccacc 84
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46
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>ref|XM_754413.1| Ustilago maydis 521 hypothetical protein (UM03359.1) partial mRNA
          Length = 3894

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   agcaaggtcgaccagcagca 55
            ||||||||||||||||||||
Sbjct: 1279 agcaaggtcgaccagcagca 1260
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>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  gaagaagctcaagaagcagg 142
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404
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>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213
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>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     tggctgctgccttctcctcc 81
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035
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>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
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>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ccagagggaagggcatcgtg 306
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967
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>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698
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>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551
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>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     acagagatggctgctgcctt 74
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143
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>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  gcaagagctccaaggccaac 186
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290
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>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   ccagagggaagggcatcgtg 306
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230
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>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 177   caaggccaacaggttcacagtcat 200
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 258     cgatatctccgacgaccagc 277
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983
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>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
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>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   caaggccaacaggttcacagtcat 200
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 38      caaggtcgaccagcagcaca 57
               ||||||||||||||||||||
Sbjct: 3417956 caaggtcgaccagcagcaca 3417975
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>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aagaagctcaagaagcaggt 143
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650
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>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tggctgctgccttctcctcc 81
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919
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>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689
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>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 58     gagatggctgctgccttctcctcc 81
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822
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>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 62  tggctgctgccttctcctcc 81
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,501,315
Number of Sequences: 3902068
Number of extensions: 2501315
Number of successful extensions: 48163
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47840
Number of HSP's gapped (non-prelim): 316
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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