>YPMC_ECOLI (P07115) Hypothetical mobilization operon protein C|
          Length = 112

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = +2

Query: 341 WTASVSAVCTSTELWSWIW*S*VQCSSASPAVLWAATSRSAA 466
           W  S SA C S  L  W+W    + SSAS A+LWA+ S  +A
Sbjct: 49  WAFSHSAACAS--LACWVWLMTCRASSASVAMLWASGSICSA 88

>HXA5_MOUSE (P09021) Homeobox protein Hox-A5 (Hox-1.3) (M2)|
          Length = 270

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
 Frame = -2

Query: 399 HHIQDHSSVEVQTADTEAVHS---------LELVMGHS---------CCSSLAQGGSLVA 274
           H+  DHSSV  Q  D+ ++HS         ++L +G S            S A G S   
Sbjct: 22  HNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAAGASAAP 81

Query: 273 GFRMVEIPVCSSHNHHPGEAEGLASGPSPCHLLVVAAVGNHHKGVGSMARSEEA 112
                  P  S+H+  P      A  PSP          +HH G  S+  S  A
Sbjct: 82  AEPRYSQPATSTHSPPPDPLPCSAVAPSP-------GSDSHHGGKNSLGNSSGA 128

>PNS1_NEUCR (Q870V7) Protein PNS1|
          Length = 554

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 327 QAPSYGQPQYPQSAPPQNYGPGYGDPRYS 413
           Q P YG   Y    PPQ YG GYGD  Y+
Sbjct: 41  QQPQYG---YGGGPPPQQYGNGYGDGGYA 66

>Y175_HELPY (P56112) Hypothetical protein HP0175 precursor|
          Length = 299

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 132 MARSEEALLVD--IHTAVVENEAPTEKLGHDPE 40
           +   E+  L+D  I TA+VENEA TEKL   PE
Sbjct: 73  LKEKEKEALIDQAIRTALVENEAKTEKLDSTPE 105

>HXA5_HUMAN (P20719) Homeobox protein Hox-A5 (Hox-1C)|
          Length = 270

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
 Frame = -2

Query: 399 HHIQDHSSVEVQTADTEAVHS---------LELVMGHS---------CCSSLAQGGSLVA 274
           H+  DHSSV  Q  D+ ++HS         ++L +G S            S A   S   
Sbjct: 22  HNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAP 81

Query: 273 GFRMVEIPVCSSHNHHPGEAEGLASGPSPCHLLVVAAVGNHHKGVGSMARSEEA 112
                  P  S+H+  P      A  PSP          +HH G  S++ S  A
Sbjct: 82  AEPRYSQPATSTHSPQPDPLPCSAVAPSP-------GSDSHHGGKNSLSNSSGA 128

>TMBI1_HUMAN (Q969X1) Transmembrane BAX inhibitor motif-containing protein 1|
           (RECS1 protein homolog)
          Length = 311

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
 Frame = +3

Query: 333 PSYGQPQ-YPQSAPP-----QNYGPGYG 398
           P YG P  YPQ  PP      NYGPG+G
Sbjct: 45  PGYGHPAGYPQPMPPTHPMPMNYGPGHG 72

>DLGP1_HUMAN (O14490) Disks large-associated protein 1 (DAP-1) (Guanylate|
           kinase-associated protein) (hGKAP)
           (SAP90/PSD-95-associated protein 1) (SAPAP1)
           (PSD-95/SAP90-binding protein 1)
          Length = 977

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 197 PEARPSASPGWW 232
           P+ARPS SPGWW
Sbjct: 191 PKARPSTSPGWW 202

>PSAB_PEA (P05311) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)|
           (PSI-B)
          Length = 734

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 239 LLQTGISTIRKPATKLPPWARELQQLWPITSSKLWTASVSAVCTSTELWSWIW 397
           L +  +S   + +T L  W R+   LW + SS+L       VC S  +W+W++
Sbjct: 601 LWRGNVSQFNESSTYLMGWLRDY--LW-LNSSQLINGITPLVCNSLSVWAWMF 650

>SMC1_SCHPO (O94383) Structural maintenance of chromosome 1 (Cohesin complex|
           subunit psm1) (Chromosome segregation protein smc1)
          Length = 1233

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +1

Query: 328 KLQAMDSLS----IRSLHLHRTMVLDMVILGTVLQRQPSSTMGSHQPVRSKATLNSQILM 495
           K   MD++S    ++S HL  T V +++  G +LQR  +    S  P  +   L      
Sbjct: 38  KSNLMDAISFVLGVKSSHLRSTNVKELIYRGKILQRDNTDFTDSSNPTTAYVKL------ 91

Query: 496 LGLHMVDLDNG 528
               M +LDNG
Sbjct: 92  ----MYELDNG 98

>DMBT1_PIG (Q4A3R3) Deleted in malignant brain tumors 1 protein precursor|
          Length = 1204

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 14/70 (20%)
 Frame = +2

Query: 14  WLWSATSPPSGSWPSFSVG-----------ASFSTTAV---WISTKRASSERAILPTPLW 151
           +LWS    P   W + + G           A  S+T +   W +T R+ +       P W
Sbjct: 159 YLWSC---PHSGWKTHNCGHQEDAGVICSGAQRSSTVIPDWWYTTTRSQTAHIRSTIPAW 215

Query: 152 WLPTAATTKR 181
           W PT  T  R
Sbjct: 216 WHPTTTTAAR 225

>Y175_HELPJ (Q9ZMQ7) Hypothetical protein jhp_0161 precursor|
          Length = 299

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 126 RSEEALLVD-IHTAVVENEAPTEKLGHDPE 40
           + +EAL+   I TA+VENEA  EKL   PE
Sbjct: 76  KEKEALIEQAIRTALVENEAKAEKLNQTPE 105

>SURF1_MOUSE (P09925) Surfeit locus protein 1|
          Length = 306

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -3

Query: 176 WWWLLWVTTIRGLGVWRVLRRPSWWISILLWLRTRP-----PLRSWAMTLRVVMLRTIAT 12
           W+ LL   T  GLG W+V RR  W + ++  L +R      PL +  M L+ +  R +  
Sbjct: 71  WFLLLIPATAFGLGTWQVQRR-KWKLKLIAELESRVMAEPIPLPADPMELKNLEYRPVKV 129

Query: 11  R 9
           R
Sbjct: 130 R 130

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 4/159 (2%)
 Frame = +2

Query: 26   ATSPPSGSWPSFSVGASFSTTAVWISTKRASSERAILPTPLWWLP---TAATTKRWHGLG 196
            +T  PS S P  +  ++  TT        ++S  +  P   W L    TAATT    G G
Sbjct: 4291 STIHPS-STPETTHTSTVLTTKATTRATSSTSTPSSTPGTTWILTELTTAATTTA--GTG 4347

Query: 197  PEARPSASPG-WWL*LLQTGISTIRKPATKLPPWARELQQLWPITSSKLWTASVSAVCTS 373
            P A PS++PG  W+    T  +T           +      W +T     TA+V+    S
Sbjct: 4348 PTATPSSTPGTTWILTELTTTATTTASTGSTATLSSTPGTTWILTEPST-TATVTVPTGS 4406

Query: 374  TELWSWIW*S*VQCSSASPAVLWAATSRSAARLPSTARS 490
            T   S       Q ++ +P V   AT+ +     +T  S
Sbjct: 4407 TATASS-----TQATAGTPHVSTTATTPTVTSSKATPSS 4440

>SURF1_RAT (Q9QXU2) Surfeit locus protein 1|
          Length = 306

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = -3

Query: 173 WWLLWV-TTIRGLGVWRVLRRPSWWISILLWLRTRP-----PLRSWAMTLRVVMLRTIAT 12
           W+LL++  T  GLG W+V RR  W + ++  L +R      PL +  M L+ +  R +  
Sbjct: 71  WFLLFIPATAFGLGTWQVQRR-KWKLKLIAELESRVMAEPIPLPADPMELKNLEYRPVKV 129

Query: 11  R 9
           R
Sbjct: 130 R 130

>GID_BRAJA (Q89L21) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 475

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
 Frame = -2

Query: 459 DRLVAAHSTAGLALEHCT*DHHIQDHSSVEVQTADTEAVHSLELVMGHSCCSSLAQGGSL 280
           DR+  AH T GLA   C+      D ++  V     E      L+M  +  + +  GG+L
Sbjct: 40  DRMTEAHRTDGLAELVCSNSFRSDDAANNAVGLLHAEMRRLGSLIMRAADANQVPAGGAL 99

Query: 279 VAGFRMVEIPVCSSHNHHP------GEAEGL 205
                     V  + N HP      GE  GL
Sbjct: 100 AVDRDGFSAAVTKALNDHPLIEIARGEIAGL 130

>COA1_POVLY (P04010) Coat protein VP1|
          Length = 368

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
 Frame = -2

Query: 372 EVQTADT----EAVHSLELVMGHSCCSSLAQGGSLVAGFRMVEIPVCSSHNH------HP 223
           E  T DT    EAV     V+G S   +L QGG  + G     +PV  +  H      HP
Sbjct: 101 EDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGHP 160

Query: 222 GEAEGLASGPSPCHLLVVAAVGNHHKG 142
            E +GL +  +  +   V A+ N   G
Sbjct: 161 LELQGLVASSTATYPDDVVAIKNMKPG 187

>CKLF5_HUMAN (Q96DZ9) CKLF-like MARVEL transmembrane domain-containing protein 5|
           (Chemokine-like factor superfamily member 5)
          Length = 223

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 209 ALPLVPAHATSWW-WLLWVTTIRGLGVWRVLR 117
           A+P VPA A  +W WLLW      LG    LR
Sbjct: 133 AVPWVPAPAPGFWSWLLWFICFHSLGSSDFLR 164

>PSTA1_MYCTU (O86345) Phosphate transport system permease protein pstA-1|
          Length = 304

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -3

Query: 170 WLLWVTTIRGLGVWRVLRRPSWW 102
           WLLWV   RG   W  + R  WW
Sbjct: 50  WLLWVVIARG---WFAVTRSGWW 69

>ALO_YEAST (P54783) D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) (ALO)|
           (L-galactono-gamma-lactone oxidase)
          Length = 526

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
 Frame = +2

Query: 8   VWW--------LW------SATSPPSGSWPSFSVGASFSTTAVWISTK 109
           VWW        LW       A + P+ SW    +G  F  T +WISTK
Sbjct: 224 VWWYPYTRKCVLWRGNKTTDAQNGPAKSWWGTKLGRFFYETLLWISTK 271

>KTI2_SOYBN (P25273) Kunitz-type trypsin inhibitor KTI2 precursor|
          Length = 204

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 222 GEAEGLASGPSPCHLLVVAAVGNHHKGVGSMARS 121
           G  EG ++G   C L VV +   H+KG+G + +S
Sbjct: 53  GGIEGNSTGKEICPLTVVQSPNKHNKGIGLVFKS 86

>POU47_BRARE (P79746) POU domain protein ZP-47|
          Length = 378

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/80 (21%), Positives = 31/80 (38%)
 Frame = +1

Query: 97  DIHQEGLLRTRHTPNPLMVVTHSSHHQEVAWAGTRGKAXXXXXXXXXXXXNRDLNHTKAS 276
           ++H    L+ +  P  L+  TH +HH   AW  T                 + L +++ S
Sbjct: 90  EMHNSSNLQHQSRPPHLVHQTHGNHHDSRAWRTT----TAAHIPSMATSNGQSLIYSQPS 145

Query: 277 HQTTPLGQGTTTAMAHHKLQ 336
                L  G+   + HH ++
Sbjct: 146 FSVNGLIPGSGQGIHHHSMR 165

>PER_DROSC (P91705) Period circadian protein (Fragment)|
          Length = 375

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 50  WPSFSVGASFSTTAVWISTKRA----SSERAILPTPLWWLPTAATTKRWHGLGPEARP 211
           WP FSVG +  T+ +   T  A    S++  + PT  +++P +       G  P  RP
Sbjct: 267 WPPFSVGITTPTSVLSTHTAVAQSSFSTQHNLFPT-FYYIPASIAASSPSGTSPNPRP 323

>PER_DROCP (P91607) Period circadian protein (Fragment)|
          Length = 375

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 50  WPSFSVGASFSTTAVWISTKRA----SSERAILPTPLWWLPTAATTKRWHGLGPEARP 211
           WP FSVG +  T+ +   T  A    S++  + PT  +++P +       G  P  RP
Sbjct: 267 WPPFSVGITTPTSVLSTHTAVAQSSFSTQHNLFPT-FYYIPASIAASSPSGTSPNPRP 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,594,786
Number of Sequences: 219361
Number of extensions: 1492662
Number of successful extensions: 5314
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5291
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)