| Clone Name | baal26a23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467899.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1735 Score = 111 bits (56), Expect = 2e-21 Identities = 81/88 (92%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 13 gtccggctcgaccgcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagg 71 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct: 928 gtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagg 987 Query: 72 gagatggtcgcggccggggagcagagcg 99 |||||||||||||| ||||||||||||| Sbjct: 988 gagatggtcgcggcgggggagcagagcg 1015 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agggaagcgcgtggccgccgt 265 ||||||||||||||||||||| Sbjct: 1221 agggaagcgcgtggccgccgt 1241
>gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4/PHD zinc finger-like protein mRNA, complete cds Length = 1670 Score = 111 bits (56), Expect = 2e-21 Identities = 81/88 (92%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 13 gtccggctcgaccgcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagg 71 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct: 915 gtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagg 974 Query: 72 gagatggtcgcggccggggagcagagcg 99 |||||||||||||| ||||||||||||| Sbjct: 975 gagatggtcgcggcgggggagcagagcg 1002 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agggaagcgcgtggccgccgt 265 ||||||||||||||||||||| Sbjct: 1208 agggaagcgcgtggccgccgt 1228
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 111 bits (56), Expect = 2e-21 Identities = 81/88 (92%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 13 gtccggctcgaccgcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagg 71 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct: 31987225 gtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagg 31987284 Query: 72 gagatggtcgcggccggggagcagagcg 99 |||||||||||||| ||||||||||||| Sbjct: 31987285 gagatggtcgcggcgggggagcagagcg 31987312 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 cgctgcggctgccggagcacgt 64 |||||||||||||||||||||| Sbjct: 21942590 cgctgcggctgccggagcacgt 21942569 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agggaagcgcgtggccgccgt 265 ||||||||||||||||||||| Sbjct: 31987518 agggaagcgcgtggccgccgt 31987538
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 111 bits (56), Expect = 2e-21 Identities = 81/88 (92%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 13 gtccggctcgaccgcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagg 71 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct: 148226 gtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagg 148285 Query: 72 gagatggtcgcggccggggagcagagcg 99 |||||||||||||| ||||||||||||| Sbjct: 148286 gagatggtcgcggcgggggagcagagcg 148313 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agggaagcgcgtggccgccgt 265 ||||||||||||||||||||| Sbjct: 148519 agggaagcgcgtggccgccgt 148539
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 111 bits (56), Expect = 2e-21 Identities = 81/88 (92%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 13 gtccggctcgaccgcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagg 71 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct: 7600 gtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagg 7659 Query: 72 gagatggtcgcggccggggagcagagcg 99 |||||||||||||| ||||||||||||| Sbjct: 7660 gagatggtcgcggcgggggagcagagcg 7687 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agggaagcgcgtggccgccgt 265 ||||||||||||||||||||| Sbjct: 7893 agggaagcgcgtggccgccgt 7913
>dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I10, full insert sequence Length = 1735 Score = 111 bits (56), Expect = 2e-21 Identities = 81/88 (92%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 13 gtccggctcgaccgcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagg 71 |||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||| Sbjct: 928 gtccggctcgacggcgacctagagcggtacacgctgcggctgccggagcacgtacacagg 987 Query: 72 gagatggtcgcggccggggagcagagcg 99 |||||||||||||| ||||||||||||| Sbjct: 988 gagatggtcgcggcgggggagcagagcg 1015 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 agggaagcgcgtggccgccgt 265 ||||||||||||||||||||| Sbjct: 1221 agggaagcgcgtggccgccgt 1241
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 85.7 bits (43), Expect = 1e-13 Identities = 59/63 (93%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 26 gcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagggagatggtcgcgg 84 ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | Sbjct: 6070467 gcgacctcgagcggttcacgctgcgcctgccggagcacgtgcgcagggagatggtcgccg 6070408 Query: 85 ccg 87 ||| Sbjct: 6070407 ccg 6070405
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644A02 Length = 144954 Score = 85.7 bits (43), Expect = 1e-13 Identities = 59/63 (93%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 26 gcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagggagatggtcgcgg 84 ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | Sbjct: 74966 gcgacctcgagcggttcacgctgcgcctgccggagcacgtgcgcagggagatggtcgccg 74907 Query: 85 ccg 87 ||| Sbjct: 74906 ccg 74904
>dbj|AK108491.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G02, full insert sequence Length = 1700 Score = 85.7 bits (43), Expect = 1e-13 Identities = 59/63 (93%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 26 gcgacctggagcggtt-acgctgcggctgccggagcacgtgcgcagggagatggtcgcgg 84 ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | Sbjct: 891 gcgacctcgagcggttcacgctgcgcctgccggagcacgtgcgcagggagatggtcgccg 950 Query: 85 ccg 87 ||| Sbjct: 951 ccg 953
>ref|XM_472662.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 46.1 bits (23), Expect = 0.11 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 34 gagcggtt-acgctgcggctgccggagcacgtgcg 67 |||||||| ||||||||||||||| |||||||||| Sbjct: 826 gagcggttcacgctgcggctgccgcagcacgtgcg 860
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 46.1 bits (23), Expect = 0.11 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 34 gagcggtt-acgctgcggctgccggagcacgtgcg 67 |||||||| ||||||||||||||| |||||||||| Sbjct: 14747 gagcggttcacgctgcggctgccgcagcacgtgcg 14781
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.11 Identities = 33/35 (94%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 34 gagcggtt-acgctgcggctgccggagcacgtgcg 67 |||||||| ||||||||||||||| |||||||||| Sbjct: 22410992 gagcggttcacgctgcggctgccgcagcacgtgcg 22411026
>ref|XM_654760.1| Aspergillus nidulans FGSC A4 4-aminobutyrate aminotransferase (AN2248.2), mRNA Length = 1497 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 gtcctcttcatcgtcgacgagg 239 |||||||||||||||||||||| Sbjct: 958 gtcctcttcatcgtcgacgagg 979
>emb|X15647.1|ANGATA Aspergillus nidulans gatA gene for gamma-amino-n-butyrate transaminase Length = 2612 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 gtcctcttcatcgtcgacgagg 239 |||||||||||||||||||||| Sbjct: 1535 gtcctcttcatcgtcgacgagg 1556
>dbj|AP005114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689H05 Length = 135803 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 cgctgcggctgccggagcacgt 64 |||||||||||||||||||||| Sbjct: 125875 cgctgcggctgccggagcacgt 125854
>ref|XM_450948.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1179 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 acgctgcggctgccggagcacgtgc 66 |||||||||||||| |||||||||| Sbjct: 847 acgctgcggctgcccgagcacgtgc 871
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 303 gtcggctctgtggcggtcgatgtggacaaggac 335 ||||||| ||||| |||||||||||| |||||| Sbjct: 2854607 gtcggctatgtggtggtcgatgtggaaaaggac 2854575
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 42 acgctgcggctgccggagcacgtgc 66 |||||||||||||| |||||||||| Sbjct: 17736490 acgctgcggctgcccgagcacgtgc 17736466
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 42 acgctgcggctgccggagcacgtgc 66 |||||||||||||| |||||||||| Sbjct: 45124 acgctgcggctgcccgagcacgtgc 45100
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 ggagatggtcgcggccgggga 91 ||||||||||||||||||||| Sbjct: 775753 ggagatggtcgcggccgggga 775773
>gb|AY541066.1| Hordeum vulgare subsp. vulgare PISTILLATA-like protein mRNA, complete cds Length = 965 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 agggaggagaggtgtcctct 224 |||||||||||||||||||| Sbjct: 23 agggaggagaggtgtcctct 42
>ref|XM_449913.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13101g) partial mRNA Length = 1026 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagagagccggcagatggcc 133 |||||||||||||||||||| Sbjct: 250 cagagagccggcagatggcc 269
>gb|AY163770.1| Homo sapiens general transcription factor IIH, polypeptide 1, 62kDa (GTF2H1) gene, complete cds Length = 45874 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 gagtctgtctgtactattaactca 443 |||||||||||||||| ||||||| Sbjct: 18324 gagtctgtctgtactactaactca 18347
>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence Length = 1400893 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagagagccggcagatggcc 133 |||||||||||||||||||| Sbjct: 1286810 cagagagccggcagatggcc 1286829
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 tcctcttcatcgtcgacgag 238 |||||||||||||||||||| Sbjct: 951823 tcctcttcatcgtcgacgag 951842
>gb|AC084117.6| Homo sapiens chromosome 11, clone RP11-107C21, complete sequence Length = 166973 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 gagtctgtctgtactattaactca 443 |||||||||||||||| ||||||| Sbjct: 48234 gagtctgtctgtactactaactca 48257
>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 7 of 460 of the complete genome Length = 10647 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 catttcgtcgaacgcggcgg 286 |||||||||||||||||||| Sbjct: 504 catttcgtcgaacgcggcgg 485
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 catttcgtcgaacgcggcgg 286 |||||||||||||||||||| Sbjct: 65351 catttcgtcgaacgcggcgg 65332
>gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequence Length = 10402 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 cggagagctccgagggagga 212 |||||||||||||||||||| Sbjct: 4423 cggagagctccgagggagga 4442
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ggtgtcctcttcatcgtcga 234 |||||||||||||||||||| Sbjct: 2110201 ggtgtcctcttcatcgtcga 2110182
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 gccgccgtgcatttcgtcga 277 |||||||||||||||||||| Sbjct: 5052997 gccgccgtgcatttcgtcga 5053016 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gatggtcgcggccggggagc 93 |||||||||||||||||||| Sbjct: 2920435 gatggtcgcggccggggagc 2920454 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,805,388 Number of Sequences: 3902068 Number of extensions: 2805388 Number of successful extensions: 54182 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53482 Number of HSP's gapped (non-prelim): 694 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)