ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal26a17 |
|---|---|
| Clone Library Name | barley_pub |
>DPOE3_PONPY (Q5R4W3) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA| polymerase II subunit 3) (DNA polymerase epsilon subunit p17) Length = 147 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/42 (52%), Positives = 29/42 (69%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T AN+ GKR+T+NA DV A++E+EF FV PL+ ALE Sbjct: 49 TSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALE 90
>DPOE3_HUMAN (Q9NRF9) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA| polymerase II subunit 3) (DNA polymerase epsilon subunit p17) (Chromatin accessibility complex 17) (HuCHRAC17) (CHRAC-17) (Arsenic-transactivated protein) (AsTP) Length = 147 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/42 (52%), Positives = 29/42 (69%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T AN+ GKR+T+NA DV A++E+EF FV PL+ ALE Sbjct: 49 TSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALE 90
>DPOE3_RAT (Q642A5) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA| polymerase II subunit 3) (DNA polymerase epsilon subunit p17) Length = 145 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/42 (52%), Positives = 29/42 (69%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T AN+ GKR+T+NA DV A++E+EF FV PL+ ALE Sbjct: 49 TSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALE 90
>DPOE3_MOUSE (Q9JKP7) DNA polymerase epsilon subunit 3 (EC 2.7.7.7) (DNA| polymerase II subunit 3) (DNA polymerase epsilon subunit p17) (YB-like protein 1) (YBL1) (NF-YB-like protein) Length = 145 Score = 47.0 bits (110), Expect = 5e-05 Identities = 21/42 (50%), Positives = 29/42 (69%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T AN+ GKR+T+NA DV A++E+EF F+ PL+ ALE Sbjct: 49 TSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALE 90
>NFYB2_ORYSA (Q5QMG3) Nuclear transcription factor Y subunit B-2 (OsNF-YB-2)| (Transcriptional activator HAP3A) Length = 178 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/41 (43%), Positives = 27/41 (65%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C+ KR+TIN ED+ A+ + F E+V+PL+ L Sbjct: 78 TSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYL 118
>NFYB2_ARATH (Q9FGJ3) Nuclear transcription factor Y subunit B-2 (AtNF-YB-2)| (Transcriptional activator HAP3B) Length = 190 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/42 (40%), Positives = 28/42 (66%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A+D C+ KR+TIN +D+ A+ + F ++VEPL+ L+ Sbjct: 71 TGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQ 112
>NFYB3_ARATH (O23310) Nuclear transcription factor Y subunit B-3 (AtNF-YB-3)| (Transcriptional activator HAP3C) Length = 161 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 28/42 (66%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A+D C+ KR+TIN +D+ A+ + F ++VEPL+ L+ Sbjct: 65 TGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQ 106
>NFYB_MAIZE (P25209) Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box| DNA-binding protein subunit B) Length = 179 Score = 38.9 bits (89), Expect = 0.013 Identities = 16/42 (38%), Positives = 28/42 (66%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A+D C+ KR+TIN +D+ A+ + F +++EPL+ L+ Sbjct: 75 TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQ 116
>NFYB_PETMA (P25210) Nuclear transcription factor Y subunit beta (Nuclear| transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) Length = 209 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A++ C KR+TIN ED+ A+ + F +VEPL+ L+ Sbjct: 99 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQ 140
>NFYB_CHICK (P25207) Nuclear transcription factor Y subunit beta (Nuclear| transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) Length = 205 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A++ C KR+TIN ED+ A+ + F +VEPL+ L+ Sbjct: 96 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 137
>NFYB_XENLA (P25211) Nuclear transcription factor Y subunit beta (Nuclear| transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) (Fragment) Length = 122 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A++ C KR+TIN ED+ A+ + F +VEPL+ L+ Sbjct: 13 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 54
>NFYB3_ORYSA (Q60EQ4) Nuclear transcription factor Y subunit B-3 (OsNF-YB-3)| (Transcriptional activator HAP3B) Length = 185 Score = 38.9 bits (89), Expect = 0.013 Identities = 16/42 (38%), Positives = 28/42 (66%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A+D C+ KR+TIN +D+ A+ + F +++EPL+ L+ Sbjct: 82 TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQ 123
>NFYB_RAT (P63140) Nuclear transcription factor Y subunit beta (Nuclear| transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) (CCAAT-binding transcription factor subunit A) (CBF-A) Length = 207 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A++ C KR+TIN ED+ A+ + F +VEPL+ L+ Sbjct: 98 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 139
>NFYB_MOUSE (P63139) Nuclear transcription factor Y subunit beta (Nuclear| transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) Length = 207 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A++ C KR+TIN ED+ A+ + F +VEPL+ L+ Sbjct: 98 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 139
>NFYB_HUMAN (P25208) Nuclear transcription factor Y subunit beta (Nuclear| transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) Length = 207 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A++ C KR+TIN ED+ A+ + F +VEPL+ L+ Sbjct: 98 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 139
>NFYB_HORSE (Q6RG77) Nuclear transcription factor Y subunit beta (Nuclear| transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B) Length = 207 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T A++ C KR+TIN ED+ A+ + F +VEPL+ L+ Sbjct: 98 TSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQ 139
>NFYB8_ARATH (Q8VYK4) Nuclear transcription factor Y subunit B-8 (AtNF-YB-8)| Length = 173 Score = 37.4 bits (85), Expect = 0.039 Identities = 16/41 (39%), Positives = 27/41 (65%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C+ KR+TIN +D+ A+ + F +++EPL+ L Sbjct: 74 TSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYL 114
>NFYB6_ARATH (Q84W66) Nuclear transcription factor Y subunit B-6 (AtNF-YB-6)| (Protein LEAFY COTYLEDON 1-LIKE) Length = 234 Score = 37.4 bits (85), Expect = 0.039 Identities = 16/37 (43%), Positives = 26/37 (70%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPL 506 T AN+ C+ +R+TI AEDV A+ ++ F +++EPL Sbjct: 102 TGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPL 138
>DPB4_SCHPO (P87174) DNA polymerase epsilon subunit D (EC 2.7.7.7) (DNA| polymerase II subunit D) Length = 210 Score = 37.0 bits (84), Expect = 0.050 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 T + ++ + R+ + +DV ALDEIE+PEF + L+ LE Sbjct: 56 TSASGEIATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHLE 97
>NFYBA_ARATH (Q67XJ2) Nuclear transcription factor Y subunit B-10 (AtNF-YB-10)| Length = 176 Score = 37.0 bits (84), Expect = 0.050 Identities = 15/41 (36%), Positives = 27/41 (65%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C+ KR+TIN +D+ A+ + F ++++PL+ L Sbjct: 73 TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYL 113
>NFYB1_ARATH (Q9SLG0) Nuclear transcription factor Y subunit B-1 (AtNF-YB-1)| (Transcriptional activator HAP3A) Length = 141 Score = 37.0 bits (84), Expect = 0.050 Identities = 15/41 (36%), Positives = 27/41 (65%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C+ KR+T+N +D+ A+ + F +++EPL+ L Sbjct: 65 TSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYL 105
>NFYB7_ARATH (Q9SIT9) Nuclear transcription factor Y subunit B-7 (AtNF-YB-7)| Length = 215 Score = 36.6 bits (83), Expect = 0.066 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C+ KR+TIN +D+ A+ + F ++V PL+ L Sbjct: 80 TGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYL 120
>NFYB4_ORYSA (Q65XK1) Nuclear transcription factor Y subunit B-4 (OsNF-YB-4)| (Transcriptional activator HAP3C) Length = 143 Score = 36.6 bits (83), Expect = 0.066 Identities = 16/41 (39%), Positives = 26/41 (63%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C KR+TIN +D+ ++ + F ++VEPL+ L Sbjct: 66 TSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYL 106
>HAP3_KLULA (P40914) Transcriptional activator HAP3| Length = 205 Score = 35.8 bits (81), Expect = 0.11 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A D C GKR+TIN ED+ +L + F + E L+ L Sbjct: 66 TSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYL 106
>NFYB9_ARATH (Q9SFD8) Nuclear transcription factor Y subunit B-9 (AtNF-YB-9)| (Protein LEAFY COTYLEDON 1) Length = 208 Score = 35.4 bits (80), Expect = 0.15 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPL 506 T AN+ C+ +R+TI AED+ A+ ++ F +V+PL Sbjct: 73 TGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPL 109
>DPB4_DEBHA (Q6BIP4) DNA polymerase epsilon subunit D (EC 2.7.7.7) (DNA| polymerase II subunit D) Length = 247 Score = 35.4 bits (80), Expect = 0.15 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = +3 Query: 402 RANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 +A + KD R+TINA+D+ AL++ EF F+ ++ L Sbjct: 79 QARQISKDEGRKTINAQDILSALEKAEFSGFIPEVKQKL 117
>DR1_ARATH (P49592) Dr1 protein homolog| Length = 159 Score = 33.9 bits (76), Expect = 0.43 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +3 Query: 405 ANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 +NDVC ++TI E V KAL + F E++E + A E Sbjct: 58 SNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYE 96
>HAP3_YEAST (P13434) Transcriptional activator HAP3 (UAS2 regulatory protein A)| Length = 144 Score = 33.5 bits (75), Expect = 0.56 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C KR+TIN ED+ +L + F + E L+ L Sbjct: 81 TSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYL 121
>TBAP_RAT (Q5XI68) TATA-binding protein-associated phosphoprotein| (Down-regulator of transcription 1) (Negative cofactor 2 beta) (NC2 beta) Length = 176 Score = 32.3 bits (72), Expect = 1.2 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +3 Query: 405 ANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 AN++C +++TI+ E V +AL+ + F ++ ++ L+ Sbjct: 54 ANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>TBAP_MOUSE (Q91WV0) TATA-binding protein-associated phosphoprotein| (Down-regulator of transcription 1) (Negative cofactor 2 beta) (NC2 beta) Length = 176 Score = 32.3 bits (72), Expect = 1.2 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +3 Query: 405 ANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 AN++C +++TI+ E V +AL+ + F ++ ++ L+ Sbjct: 54 ANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>TBAP_HUMAN (Q01658) TATA-binding protein-associated phosphoprotein| (Down-regulator of transcription 1) (Dr1 protein) (Negative cofactor 2 beta) (NC2 beta) Length = 176 Score = 32.3 bits (72), Expect = 1.2 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +3 Query: 405 ANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 AN++C +++TI+ E V +AL+ + F ++ ++ L+ Sbjct: 54 ANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>TBAP_CHICK (Q5ZMV3) TATA-binding protein-associated phosphoprotein| (Down-regulator of transcription 1) Length = 176 Score = 32.3 bits (72), Expect = 1.2 Identities = 11/39 (28%), Positives = 25/39 (64%) Frame = +3 Query: 405 ANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALE 521 AN++C +++TI+ E V +AL+ + F ++ ++ L+ Sbjct: 54 ANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQ 92
>NC2B_DROME (Q9VJQ5) Negative cofactor 2 beta (dNC2) (Down-regulator of| transcription 1) Length = 183 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +3 Query: 405 ANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 AN+VC ++TINAE V +AL+ + F ++ + L Sbjct: 61 ANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVL 98
>PNO_EUGGR (Q94IN5) Pyruvate dehydrogenase [NADP+], mitochondrial precursor| (EC 1.2.1.51) (EC 1.16.1.5) (Pyruvate:NADP+ oxidoreductase) (EgPNOmt) (Aquacobalamin reductase [NADPH]) Length = 1803 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 488 RVCRAPEDCTGRSVLFSTCILHSVTVCCSCSAVPVKHMFFEF 613 R+ APEDCTG V TC ++ + + +A PV+ +EF Sbjct: 803 RIQVAPEDCTGCQVCVETCPDDALEMTDAFTATPVQRTNWEF 844
>UACA_BOVIN (Q8HYY4) Uveal autoantigen with coiled-coil domains and ankyrin| repeats protein (Beta-actin-binding protein) (BetaCAP73) Length = 1401 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/50 (36%), Positives = 28/50 (56%) Frame = -2 Query: 636 IHTASKVLNSKNICFTGTAEQEQQTVTEWRIQVENKTDLPVQSSGALQTR 487 I T + L +K C+ E+EQQTVT+ R +EN+ + V + LQ + Sbjct: 1113 IETLKEELKTKQRCY----EKEQQTVTQLRQMLENQKNSSVPLAEHLQVK 1158
>NFYB5_ARATH (O82248) Nuclear transcription factor Y subunit B-5 (AtNF-YB-5)| Length = 160 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 396 TCRANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTAL 518 T A+D C KR+T+N +D+ A+ + F ++ L+ L Sbjct: 95 TGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYL 135
>SYL_TREPA (O83595) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 878 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Frame = +3 Query: 378 RHGCGFTCRANDVCKDGKRQ-----TINAEDVFKALDEIEFPEFVEPLRTALEGQSC 533 R C C A +V + G RQ T AE + LDE+++PE V+ ++ G+SC Sbjct: 174 RDACCERCGA-EVTRRGVRQWMVRITAYAERLLSDLDELDWPESVKQMQRNWIGKSC 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,736,745 Number of Sequences: 219361 Number of extensions: 1680973 Number of successful extensions: 4450 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 4298 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4450 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
