>MTR4_YEAST (P47047) ATP-dependent RNA helicase DOB1 (EC 3.6.1.-) (mRNA|
           transport regulator MTR4)
          Length = 1073

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 543 SQNPLPRSFHLQRFWG*YTQKHDVH 469
           S NPL  S  L+  +G Y++KHD+H
Sbjct: 836 SSNPLTNSMRLEELYGKYSRKHDLH 860

>DPOL_HBVW9 (P17100) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 845

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 417 LFNLRPDEGF*WAT*SKGEHHVSVCISPKIVAGGSFLVE 533
           L NLR D G        GEHH+ +  +P  V GG FLV+
Sbjct: 344 LVNLREDRG---PCDEHGEHHIRIPRTPARVTGGVFLVD 379

>PRG4_MOUSE (Q9JM99) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
           stimulating factor) (Superficial zone proteoglycan)
           [Contains: Proteoglycan-4 C-terminal part]
          Length = 1054

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = -2

Query: 541 PEPSTKKLPPATILGLIHTET*CSPLDYVAH*KPSSGRKLNNS*QEN-PVKTEYQRKVLT 365
           PEP+T K P  T      T    + L   A    +   ++ N  +E  P   +      T
Sbjct: 605 PEPTTPKKPEPTTTSPKTTTLKATTL---APKVTAPAEEIQNKPEETTPASEDSDDSKTT 661

Query: 364 LAKHQGLGMPEPTQSDPRSPQKPTLNTKVPR 272
           L   +    P+PT+   ++P+KPT +TK P+
Sbjct: 662 LKPQKPTKAPKPTKKPTKAPKKPT-STKKPK 691

>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein|
          Length = 1723

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
 Frame = -2

Query: 445 KPSSGRK------LNNS*QENPVKTEYQRKVLTLAKHQGLGMPEPTQSDPRSPQKPTLNT 284
           KPS G K       + S Q  P  +  +RK  + A      +P P  S PR+P K +   
Sbjct: 79  KPSPGTKGQLRGESDRSKQPPPASSPTKRKGRSRALE---AVPAPPASGPRAPAKESPPK 135

Query: 283 KVPRYIPLPAWGETNNGEKAS-I*GRNLTI*EAG--QGGGEEDLVGPGPRHRAGHKSGAR 113
           +VP   P+       +GE+A+    R L +  +        E   GP P H  G   G R
Sbjct: 136 RVPDPSPVTKGTAAESGEEAARAIPRELPVKSSSLLPEIKPEHKRGPLPNHFNGRAEGGR 195

Query: 112 N 110
           +
Sbjct: 196 S 196

>NOTCH_DROME (P07207) Neurogenic locus Notch protein precursor|
          Length = 2703

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = -2

Query: 370  LTLAKHQGLGMPEPTQSDPRSPQKPTLNTKVPRYIPLPAWGETN-NGEKASI*GRNLTI* 194
            L L+ H  LG P P +S P  P  PT    +        +G +N N       G  +   
Sbjct: 2428 LALSPHAYLGSPSPAKSRPSLPTSPTHIQAMRHATQQKQFGGSNLNSLLGGANGGGV--- 2484

Query: 193  EAGQGGGEEDLVGPGPRH 140
              G GGG    VG GP++
Sbjct: 2485 -VGGGGGGGGGVGQGPQN 2501

>DPOL_HBVW2 (P03159) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 845

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 417 LFNLRPDEGF*WAT*SKGEHHVSVCISPKIVAGGSFLVE 533
           L NLR D G        GEHH+ +  +P  V GG FLV+
Sbjct: 344 LVNLREDWG---PCDEHGEHHIRIPRTPARVTGGVFLVD 379

>DPOL_HBVAW (P03158) DNA polymerase (EC 2.7.7.7)|
          Length = 481

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 417 LFNLRPDEGF*WAT*SKGEHHVSVCISPKIVAGGSFLVE 533
           L NLR D G        GEHH+ +  +P  V GG FLV+
Sbjct: 337 LVNLREDWG---PCDDHGEHHIRIPRTPARVTGGVFLVD 372

>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21|
          Length = 778

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 27  RSNPRSNPLPANHRAPVAPAAGHGHLPLFLAPDLCPAR 140
           R+ P S   P    +PVA        P FL+P L PAR
Sbjct: 447 RTEPSSRNEPNEGSSPVAETTNDDERPRFLSPPLWPAR 484


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,347,202
Number of Sequences: 219361
Number of extensions: 1932111
Number of successful extensions: 4984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4979
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)