ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal26a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S28A2_HUMAN (O43868) Sodium/nucleoside cotransporter 2 (Na(+)/nu... 32 1.3
2ZN490_HUMAN (Q9ULM2) Zinc finger protein 490 31 2.9
3COX3_CANPA (Q34214) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) ... 31 3.8
4FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epider... 26 4.2
5PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early de... 30 5.0
6GP111_HUMAN (Q8IZF7) Probable G-protein coupled receptor 111 (G-... 30 6.5
7ABCG3_MOUSE (Q99P81) ATP-binding cassette sub-family G member 3 30 6.5
8YMA2_YEAST (Q04263) Hypothetical 84.6 kDa protein in GLO1-YPT7 i... 30 8.5

>S28A2_HUMAN (O43868) Sodium/nucleoside cotransporter 2 (Na(+)/nucleoside|
           cotransporter 2) (Sodium-coupled nucleoside transporter
           2) (Concentrative nucleoside transporter 2) (CNT 2)
           (hCNT2) (Sodium/purine nucleoside co-transporter) (SPNT)
          Length = 658

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 11/199 (5%)
 Frame = +2

Query: 80  LCLVAAACTLLSTVCNFQVFLLSDDDGFTNKEISEFV-TGTMEFAICYSYIFLKLHELIL 256
           LCL  AA  L + + NFQ            + ++ FV T  + F + +S++   L + + 
Sbjct: 85  LCLAYAAYLLAACILNFQ------------RALALFVITCLVIFVLVHSFLKKLLGKKLT 132

Query: 257 PNFAP-----LKSWIKWGRNFRIFRDTGVFVTISYLLLLDISWRFVSLAIFPVMAIAFIG 421
               P     L+ W KW           VF  +S + L  I W  +  A  P   I F G
Sbjct: 133 RCLKPFENSRLRLWTKW-----------VFAGVSLVGL--ILWLALDTAQRPEQLIPFAG 179

Query: 422 ALYFKLDPHTGDISRKVTGRSSKVDEKTIRTPVKLQIIVVATFGALLVMDQLDDDTAMGF 601
              F L      I    +   S V  +T+ + + LQ +    FG L++       T +G+
Sbjct: 180 ICMFIL------ILFACSKHHSAVSWRTVFSGLGLQFV----FGILVIR------TDLGY 223

Query: 602 AISQFL-----LFLSSTVA 643
            + Q+L     +FL+ TVA
Sbjct: 224 TVFQWLGEQVQIFLNYTVA 242



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>ZN490_HUMAN (Q9ULM2) Zinc finger protein 490|
          Length = 529

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 568 HHQQRPECCHHYDLKLHRCPDC 503
           H +Q+P  CH Y  K H+C +C
Sbjct: 178 HTEQKPNECHEYGEKPHKCKEC 199



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>COX3_CANPA (Q34214) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III) (Cytochrome oxidase subunit 3)
          Length = 269

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 239 LHELILPNFAPLKSWIKWGRNFRIFRDTGVFVTISYLLLLDISWRFVSLAIF 394
           LH ++L     + +W  +  +F      G   TI YL +LD+ W F+ + ++
Sbjct: 214 LHMIMLTIMLVICTWRVYNYDFTNTSHVGAETTILYLHVLDVIWLFIYIIVY 265



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>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth|
            factor-like domains 1)
          Length = 4351

 Score = 25.8 bits (55), Expect(2) = 4.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 428  YFKLDPHTGDISRK 469
            YF++DP+ GDIS K
Sbjct: 2115 YFRIDPYVGDISLK 2128



 Score = 23.1 bits (48), Expect(2) = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 282  GSNGVVTSGFSETRAFL*LYP 344
            G+NG VT GF+E  A+  + P
Sbjct: 2100 GANGSVTYGFAEDYAYFRIDP 2120



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>PHC1_MOUSE (Q64028) Polyhomeotic-like protein 1 (mPH1) (Early development|
            regulatory protein 1) (RAE-28)
          Length = 1012

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
 Frame = -1

Query: 547  CCHHYDLKLHRCPD----CFLVDLRRSPRNFATDVACMRIELEVQCSYESNGHDGKDGKR 380
            C H + LK  +  +     +    RR PR  ++D+A  +I+ +     E +     +   
Sbjct: 839  CSHQFRLKRKKMKEFQEASYARVRRRGPRRSSSDIARAKIQGKRHRGQEDSSRGSDNSSY 898

Query: 379  DE--SPTDVQ**QVGYSHKNARVSENPEVTTPFDPRLQG 269
            DE  SPT      V   H    +     +TTP  P LQG
Sbjct: 899  DEALSPTSPGPLSVRAGHGERDLGNT--ITTPSTPELQG 935



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>GP111_HUMAN (Q8IZF7) Probable G-protein coupled receptor 111 (G-protein coupled|
           receptor PGR20)
          Length = 708

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 431 FKLDPHTGDISRKVTGRSSKVDEKTIRTPVKLQIIVVA--TFGALLVMDQLDDDTAMGFA 604
           F       D S +VTGR     ++  + P   Q+I +A  T GA+L    L++ T  G  
Sbjct: 306 FTFSMRINDTSNEVTGRVLISRDELRKVPSPSQVISIAFPTIGAILEASLLENVTVNGLV 365

Query: 605 ISQFL 619
           +S  L
Sbjct: 366 LSAIL 370



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>ABCG3_MOUSE (Q99P81) ATP-binding cassette sub-family G member 3|
          Length = 650

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 197 TMEFAICYSYIFLKLHELILPNFAPLKSWIKWGRNFRIFRDTGVFVTISYLLLLDI 364
           T E + C++Y+     E ++     L SW  W  +  +     + +TI+Y+ LL +
Sbjct: 589 TEEVSRCHNYVICTGEEFLMIQGIDLSSWGFWENHLALVCTMIILLTITYVQLLQV 644



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>YMA2_YEAST (Q04263) Hypothetical 84.6 kDa protein in GLO1-YPT7 intergenic|
           region
          Length = 737

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 523 LHRCPDCF--LVDLRRSPRNFATDVACMRIELEVQCSYESNGHDGKDGKRDESPTDV 359
           LH+  +CF  L+ L++ P N  TD A +   + +  S  +    GK+  +   P ++
Sbjct: 462 LHQLTNCFNVLLFLKKIPENLFTDEASILYWMRINTSKRNQKPSGKENPKTMEPEEI 518


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,600,780
Number of Sequences: 219361
Number of extensions: 1855287
Number of successful extensions: 5068
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5067
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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