ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25l04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197204.1| Oryza sativa (japonica cultivar-group) putative... 270 2e-69
2dbj|AK105626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 2e-69
3dbj|AK067982.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 2e-69
4dbj|AK059628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 2e-69
5gb|AY105414.1| Zea mays PCO079032 mRNA sequence 258 6e-66
6gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 117 1e-23
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 117 1e-23
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 117 1e-23
9gb|DQ096844.1| Xenopus laevis lapl06 mRNA, complete sequence 48 0.011
10emb|AL669966.10| Mouse DNA sequence from clone RP23-174K9 on chr... 44 0.18
11gb|AY278739.1| Rattus norvegicus paraplegin (Spg7) mRNA, complet... 42 0.69
12gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.69
13gb|AC011446.6|AC011446 Homo sapiens chromosome 19 clone CTC-250I... 42 0.69
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.69
15ref|NM_181388.2| Rattus norvegicus spastic paraplegia 7 homolog ... 42 0.69
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.69
17gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 2.7
18gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, co... 40 2.7 
>ref|NM_197204.1| Oryza sativa (japonica cultivar-group) putative PKCq-interacting
           protein (OSJNBa0078O01.9), mRNA
          Length = 1840

 Score =  270 bits (136), Expect = 2e-69
 Identities = 194/212 (91%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaa 60
           |||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||||||
Sbjct: 245 gacgaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaa 304

                                                                       
Query: 61  gctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgtt 120
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 305 gctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgtt 364

                                                                       
Query: 121 ttctgcaagggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggc 180
           ||||  || |||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||
Sbjct: 365 ttcttgaa-ggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggc 423

                                           
Query: 181 caataaggttgcaaagttagctgggcctgcca 212
           ||||||||||||||||||||||||||||||||
Sbjct: 424 caataaggttgcaaagttagctgggcctgcca 455
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>dbj|AK105626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C12, full
           insert sequence
          Length = 1441

 Score =  270 bits (136), Expect = 2e-69
 Identities = 194/212 (91%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaa 60
           |||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||||||
Sbjct: 211 gacgaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaa 270

                                                                       
Query: 61  gctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgtt 120
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 271 gctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgtt 330

                                                                       
Query: 121 ttctgcaagggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggc 180
           ||||  || |||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||
Sbjct: 331 ttcttgaa-ggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggc 389

                                           
Query: 181 caataaggttgcaaagttagctgggcctgcca 212
           ||||||||||||||||||||||||||||||||
Sbjct: 390 caataaggttgcaaagttagctgggcctgcca 421
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>dbj|AK067982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121J12, full
           insert sequence
          Length = 1949

 Score =  270 bits (136), Expect = 2e-69
 Identities = 194/212 (91%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaa 60
           |||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||||||
Sbjct: 255 gacgaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaa 314

                                                                       
Query: 61  gctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgtt 120
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 315 gctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgtt 374

                                                                       
Query: 121 ttctgcaagggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggc 180
           ||||  || |||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||
Sbjct: 375 ttcttgaa-ggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggc 433

                                           
Query: 181 caataaggttgcaaagttagctgggcctgcca 212
           ||||||||||||||||||||||||||||||||
Sbjct: 434 caataaggttgcaaagttagctgggcctgcca 465
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>dbj|AK059628.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H12, full
           insert sequence
          Length = 1815

 Score =  270 bits (136), Expect = 2e-69
 Identities = 194/212 (91%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaa 60
           |||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||||||
Sbjct: 255 gacgaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaa 314

                                                                       
Query: 61  gctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgtt 120
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 315 gctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgtt 374

                                                                       
Query: 121 ttctgcaagggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggc 180
           ||||  || |||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||
Sbjct: 375 ttcttgaa-ggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggc 433

                                           
Query: 181 caataaggttgcaaagttagctgggcctgcca 212
           ||||||||||||||||||||||||||||||||
Sbjct: 434 caataaggttgcaaagttagctgggcctgcca 465
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>gb|AY105414.1| Zea mays PCO079032 mRNA sequence
          Length = 2077

 Score =  258 bits (130), Expect = 6e-66
 Identities = 191/210 (90%), Gaps = 1/210 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaa 60
           |||||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||
Sbjct: 371 gacgaggtcttcgcgcacctcgccgtcgacttcccccacgcggccttcctccgggttgaa 430

                                                                       
Query: 61  gctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgtt 120
           |||||||||||||| ||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 431 gctgaagaacaacctgaaatatcagaggcgtatggagttacagcggtgccatattttgtt 490

                                                                       
Query: 121 ttctgcaagggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggc 180
           |||||||| |||||| |||  ||| ||||| |||||||| | ||||||||||||||||||
Sbjct: 491 ttctgcaa-ggaaggaaaaattgtcgatactttggagggagtaaacccagccagcctggc 549

                                         
Query: 181 caataaggttgcaaagttagctgggcctgc 210
           |||||||||||||||  |||||||||||||
Sbjct: 550 caataaggttgcaaaagtagctgggcctgc 579
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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score =  117 bits (59), Expect = 1e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                         
Query: 54    ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 113
             |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 85333 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 85392

                        
Query: 114   ctttgttttct 124
              ||||||||||
Sbjct: 85393 ttttgttttct 85403



 Score =  109 bits (55), Expect = 4e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                         
Query: 130   ggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataaggt 189
             |||||| ||| ||||||||||  ||||||| ||||| ||||||||| |||||||||||||
Sbjct: 86069 ggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataaggt 86128

                                    
Query: 190   tgcaaagttagctgggcctgcca 212
             |||||||||||||||||||||||
Sbjct: 86129 tgcaaagttagctgggcctgcca 86151



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                     
Query: 1     gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 56
             |||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||
Sbjct: 84104 gacgaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 84159
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  117 bits (59), Expect = 1e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                            
Query: 54       ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 113
                |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18581922 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 18581981

                           
Query: 114      ctttgttttct 124
                 ||||||||||
Sbjct: 18581982 ttttgttttct 18581992



 Score =  109 bits (55), Expect = 4e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                            
Query: 130      ggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataaggt 189
                |||||| ||| ||||||||||  ||||||| ||||| ||||||||| |||||||||||||
Sbjct: 18582658 ggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataaggt 18582717

                                       
Query: 190      tgcaaagttagctgggcctgcca 212
                |||||||||||||||||||||||
Sbjct: 18582718 tgcaaagttagctgggcctgcca 18582740



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1        gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 56
                |||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||
Sbjct: 18580693 gacgaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 18580748
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  117 bits (59), Expect = 1e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                            
Query: 54       ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 113
                |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18592375 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 18592434

                           
Query: 114      ctttgttttct 124
                 ||||||||||
Sbjct: 18592435 ttttgttttct 18592445



 Score =  109 bits (55), Expect = 4e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                            
Query: 130      ggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataaggt 189
                |||||| ||| ||||||||||  ||||||| ||||| ||||||||| |||||||||||||
Sbjct: 18593111 ggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataaggt 18593170

                                       
Query: 190      tgcaaagttagctgggcctgcca 212
                |||||||||||||||||||||||
Sbjct: 18593171 tgcaaagttagctgggcctgcca 18593193



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1        gacgaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 56
                |||||||||||||| |||||||||||||||||| |||||||  |||||||| ||||
Sbjct: 18591146 gacgaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 18591201
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>gb|DQ096844.1| Xenopus laevis lapl06 mRNA, complete sequence
          Length = 843

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 126 caagggaaggcaaacctgttgata 149
           ||||||||||||||||||||||||
Sbjct: 552 caagggaaggcaaacctgttgata 575
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>emb|AL669966.10| Mouse DNA sequence from clone RP23-174K9 on chromosome 4, complete
             sequence
          Length = 199890

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 117   tgttttctgcaagggaaggcaa 138
             ||||||||||||||||||||||
Sbjct: 23835 tgttttctgcaagggaaggcaa 23856
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>gb|AY278739.1| Rattus norvegicus paraplegin (Spg7) mRNA, complete cds
          Length = 2479

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 48  cctcagggttgaagctgaagaacaa 72
           ||||||||||||||| |||||||||
Sbjct: 359 cctcagggttgaagcagaagaacaa 383
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>gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0043E10, complete sequence
          Length = 124591

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    cgccgtcgacttcccccacgc 41
             |||||||||||||||||||||
Sbjct: 67129 cgccgtcgacttcccccacgc 67149
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>gb|AC011446.6|AC011446 Homo sapiens chromosome 19 clone CTC-250I14, complete sequence
          Length = 115932

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 86    aggcatatggagttacagcagtgcc 110
             |||||||||||| ||||||||||||
Sbjct: 40140 aggcatatggagatacagcagtgcc 40116
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 21       cgccgtcgacttcccccacgc 41
                |||||||||||||||||||||
Sbjct: 22127575 cgccgtcgacttcccccacgc 22127555
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>ref|NM_181388.2| Rattus norvegicus spastic paraplegia 7 homolog (human) (Spg7), mRNA
          Length = 2479

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 48  cctcagggttgaagctgaagaacaa 72
           ||||||||||||||| |||||||||
Sbjct: 359 cctcagggttgaagcagaagaacaa 383
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 21       cgccgtcgacttcccccacgc 41
                |||||||||||||||||||||
Sbjct: 22437486 cgccgtcgacttcccccacgc 22437466
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      tcttcgcccacctcgccgtc 27
              ||||||||||||||||||||
Sbjct: 728189 tcttcgcccacctcgccgtc 728170
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>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence
          Length = 113199

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   gccagcctggccaataaggt 189
             ||||||||||||||||||||
Sbjct: 23992 gccagcctggccaataaggt 23973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,426,010
Number of Sequences: 3902068
Number of extensions: 2426010
Number of successful extensions: 496075
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 495765
Number of HSP's gapped (non-prelim): 305
length of query: 216
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 194
effective length of database: 17,147,199,772
effective search space: 3326556755768
effective search space used: 3326556755768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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