ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25k16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108423.1| Zea mays PCO136781 mRNA sequence 188 4e-45
2ref|XM_463067.1| Oryza sativa (japonica cultivar-group), mRNA 186 1e-44
3dbj|AK099233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 1e-44
4dbj|AK064786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 1e-44
5gb|BT018600.1| Zea mays clone EL01N0449B06.d mRNA sequence 157 1e-35
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 139 3e-30
7gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 139 3e-30
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 139 3e-30
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 90 3e-15
10dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D... 90 3e-15
11dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 90 3e-15
12gb|AY109070.1| Zea mays PCO136780 mRNA sequence 70 2e-09
13emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 42 0.54
14emb|BX640432.1| Bordetella parapertussis strain 12822, complete ... 42 0.54
15emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 42 0.54
16gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 0.54
17ref|XM_801126.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 2.1
18ref|NM_142283.2| Drosophila melanogaster CG17565-RA (CG17565), mRNA 40 2.1
19gb|AY051869.1| Drosophila melanogaster LD36454 full length cDNA 40 2.1
20gb|AC011615.4|AC011615 Drosophila melanogaster, chromosome 3R, r... 40 2.1
21gb|AE003713.3| Drosophila melanogaster chromosome 3R, section 51... 40 2.1
22gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 2.1
23ref|XM_541781.2| PREDICTED: Canis familiaris similar to N-glycos... 38 8.4
24emb|CR652320.2|CNS0F2AU Tetraodon nigroviridis full-length cDNA 38 8.4
25dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 38 8.4 
>gb|AY108423.1| Zea mays PCO136781 mRNA sequence
          Length = 1394

 Score =  188 bits (95), Expect = 4e-45
 Identities = 153/170 (90%), Gaps = 2/170 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggactactggcatgggtggactatctttgagatcctgcgctacatgccggnagcacaact 60
           ||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 347 ggactactggcatgggtggacgatcttcgagatcctgcgctatatgccgg-agcacaact 405

                                                                       
Query: 61  ggtcggcctacgaggaggccctcaaggccaatccggttcttgccaaggatgatgatcagc 120
           |||| || ||||||||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct: 406 ggtccgcatacgaggaggccctcaaagccaacccggttctagccaa-gatgatgatcagc 464

                                                             
Query: 121 ggcgtcgnctattccctcggcgactggatagcccagtgctacgaaggcaa 170
           || |||| ||| ||||| || |||||||| || |||||||||||||||||
Sbjct: 465 ggtgtcgtctactcccttggtgactggattgcacagtgctacgaaggcaa 514
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>ref|XM_463067.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1318

 Score =  186 bits (94), Expect = 1e-44
 Identities = 152/169 (89%), Gaps = 2/169 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gactactggcatgggtggactatctttgagatcctgcgctacatgccggnagcacaactg 61
           |||||||||||||| ||||| |||||||||||| |||| |||||||| | ||||||||||
Sbjct: 508 gactactggcatggatggacgatctttgagatcttgcggtacatgcccg-agcacaactg 566

                                                                       
Query: 62  gtcggcctacgaggaggccctcaaggccaatccggttcttgccaaggatgatgatcagcg 121
           |||||| |||||||||||||||||| |||| ||||| ||||||||| |||||||| || |
Sbjct: 567 gtcggcttacgaggaggccctcaagaccaacccggtgcttgccaag-atgatgattagtg 625

                                                            
Query: 122 gcgtcgnctattccctcggcgactggatagcccagtgctacgaaggcaa 170
           |||||| ||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 626 gcgtcgtctactccctcggcgactggattgcgcagtgctacgaaggcaa 674
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>dbj|AK099233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D10, full
           insert sequence
          Length = 1298

 Score =  186 bits (94), Expect = 1e-44
 Identities = 152/169 (89%), Gaps = 2/169 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gactactggcatgggtggactatctttgagatcctgcgctacatgccggnagcacaactg 61
           |||||||||||||| ||||| |||||||||||| |||| |||||||| | ||||||||||
Sbjct: 508 gactactggcatggatggacgatctttgagatcttgcggtacatgcccg-agcacaactg 566

                                                                       
Query: 62  gtcggcctacgaggaggccctcaaggccaatccggttcttgccaaggatgatgatcagcg 121
           |||||| |||||||||||||||||| |||| ||||| ||||||||| |||||||| || |
Sbjct: 567 gtcggcttacgaggaggccctcaagaccaacccggtgcttgccaag-atgatgattagtg 625

                                                            
Query: 122 gcgtcgnctattccctcggcgactggatagcccagtgctacgaaggcaa 170
           |||||| ||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 626 gcgtcgtctactccctcggcgactggattgcgcagtgctacgaaggcaa 674
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>dbj|AK064786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B17, full
           insert sequence
          Length = 1318

 Score =  186 bits (94), Expect = 1e-44
 Identities = 152/169 (89%), Gaps = 2/169 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   gactactggcatgggtggactatctttgagatcctgcgctacatgccggnagcacaactg 61
           |||||||||||||| ||||| |||||||||||| |||| |||||||| | ||||||||||
Sbjct: 508 gactactggcatggatggacgatctttgagatcttgcggtacatgcccg-agcacaactg 566

                                                                       
Query: 62  gtcggcctacgaggaggccctcaaggccaatccggttcttgccaaggatgatgatcagcg 121
           |||||| |||||||||||||||||| |||| ||||| ||||||||| |||||||| || |
Sbjct: 567 gtcggcttacgaggaggccctcaagaccaacccggtgcttgccaag-atgatgattagtg 625

                                                            
Query: 122 gcgtcgnctattccctcggcgactggatagcccagtgctacgaaggcaa 170
           |||||| ||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 626 gcgtcgtctactccctcggcgactggattgcgcagtgctacgaaggcaa 674
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>gb|BT018600.1| Zea mays clone EL01N0449B06.d mRNA sequence
          Length = 1555

 Score =  157 bits (79), Expect = 1e-35
 Identities = 150/170 (88%), Gaps = 3/170 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggactactggcatgggtggactatctttgagatcctgcgctacatgccggnagcacaact 60
           ||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 664 ggactactggcatgggtggacgatcttcgagatcctgcgctatatgccgg-agcacaact 722

                                                                       
Query: 61  ggtcggcctacgaggaggccctcaaggccaatccggttcttgccaaggatgatgatcagc 120
           |||| || ||||||||||||||||| ||| | |||||||| ||||| |||||||||||||
Sbjct: 723 ggtccgcatacgaggaggccctcaaagcc-acccggttctagccaa-gatgatgatcagc 780

                                                             
Query: 121 ggcgtcgnctattccctcggcgactggatagcccagtgctacgaaggcaa 170
           || |||| ||| ||||| |  || ||||| || |||||||||||||||||
Sbjct: 781 ggtgtcgtctactcccttgctgattggattgcacagtgctacgaaggcaa 830
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  139 bits (70), Expect = 3e-30
 Identities = 119/133 (89%), Gaps = 2/133 (1%)
 Strand = Plus / Plus

                                                                            
Query: 17       tggactatctttgagatcctgcgctacatgccggnagcacaactggtcggcctacgagga 76
                ||||| |||||||||||| |||| |||||||| | |||||||||||||||| ||||||||
Sbjct: 21306707 tggacgatctttgagatcttgcggtacatgcccg-agcacaactggtcggcttacgagga 21306765

                                                                            
Query: 77       ggccctcaaggccaatccggttcttgccaaggatgatgatcagcggcgtcgnctattccc 136
                |||||||||| |||| ||||| |||||||| ||||||||| || ||||||| ||| ||||
Sbjct: 21306766 ggccctcaagaccaacccggtgcttgccaa-gatgatgattagtggcgtcgtctactccc 21306824

                             
Query: 137      tcggcgactggat 149
                |||||||||||||
Sbjct: 21306825 tcggcgactggat 21306837
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>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
              sequence
          Length = 174910

 Score =  139 bits (70), Expect = 3e-30
 Identities = 119/133 (89%), Gaps = 2/133 (1%)
 Strand = Plus / Plus

                                                                          
Query: 17     tggactatctttgagatcctgcgctacatgccggnagcacaactggtcggcctacgagga 76
              ||||| |||||||||||| |||| |||||||| | |||||||||||||||| ||||||||
Sbjct: 162622 tggacgatctttgagatcttgcggtacatgcccg-agcacaactggtcggcttacgagga 162680

                                                                          
Query: 77     ggccctcaaggccaatccggttcttgccaaggatgatgatcagcggcgtcgnctattccc 136
              |||||||||| |||| ||||| |||||||| ||||||||| || ||||||| ||| ||||
Sbjct: 162681 ggccctcaagaccaacccggtgcttgccaa-gatgatgattagtggcgtcgtctactccc 162739

                           
Query: 137    tcggcgactggat 149
              |||||||||||||
Sbjct: 162740 tcggcgactggat 162752
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  139 bits (70), Expect = 3e-30
 Identities = 119/133 (89%), Gaps = 2/133 (1%)
 Strand = Plus / Plus

                                                                            
Query: 17       tggactatctttgagatcctgcgctacatgccggnagcacaactggtcggcctacgagga 76
                ||||| |||||||||||| |||| |||||||| | |||||||||||||||| ||||||||
Sbjct: 21299736 tggacgatctttgagatcttgcggtacatgcccg-agcacaactggtcggcttacgagga 21299794

                                                                            
Query: 77       ggccctcaaggccaatccggttcttgccaaggatgatgatcagcggcgtcgnctattccc 136
                |||||||||| |||| ||||| |||||||| ||||||||| || ||||||| ||| ||||
Sbjct: 21299795 ggccctcaagaccaacccggtgcttgccaa-gatgatgattagtggcgtcgtctactccc 21299853

                             
Query: 137      tcggcgactggat 149
                |||||||||||||
Sbjct: 21299854 tcggcgactggat 21299866
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 73/81 (90%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                           
Query: 17      tggactatctttgagatcctgcgctacatgccggnagcacaactggtcggcctacgagga 76
               ||||| |||||||||||| |||| |||||||| | |||||||||||||||| ||||||||
Sbjct: 8590586 tggacgatctttgagatcttgcggtacatgcccg-agcacaactggtcggcttacgagga 8590644

                                    
Query: 77      ggccctcaaggccaatccggt 97
               |||||||||| |||| |||||
Sbjct: 8590645 ggccctcaagaccaacccggt 8590665
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>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0079G12
          Length = 139796

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 73/81 (90%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                          
Query: 17     tggactatctttgagatcctgcgctacatgccggnagcacaactggtcggcctacgagga 76
              ||||| |||||||||||| |||| |||||||| | |||||||||||||||| ||||||||
Sbjct: 111796 tggacgatctttgagatcttgcggtacatgcccg-agcacaactggtcggcttacgagga 111854

                                   
Query: 77     ggccctcaaggccaatccggt 97
              |||||||||| |||| |||||
Sbjct: 111855 ggccctcaagaccaacccggt 111875
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>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0057D11
          Length = 190790

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 73/81 (90%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                         
Query: 17    tggactatctttgagatcctgcgctacatgccggnagcacaactggtcggcctacgagga 76
             ||||| |||||||||||| |||| |||||||| | |||||||||||||||| ||||||||
Sbjct: 20382 tggacgatctttgagatcttgcggtacatgcccg-agcacaactggtcggcttacgagga 20440

                                  
Query: 77    ggccctcaaggccaatccggt 97
             |||||||||| |||| |||||
Sbjct: 20441 ggccctcaagaccaacccggt 20461
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>gb|AY109070.1| Zea mays PCO136780 mRNA sequence
          Length = 706

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 68/78 (87%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                       
Query: 93  ccggttcttgccaaggatgatgatcagcggcgtcgnctattccctcggcgactggatagc 152
           |||||||| |||||| ||||||||||| || |||| ||| ||||| || |||||||| ||
Sbjct: 3   ccggttctagccaag-atgatgatcagtggtgtcgtctactcccttggtgactggattgc 61

                             
Query: 153 ccagtgctacgaaggcaa 170
            |||||||||||||||||
Sbjct: 62  acagtgctacgaaggcaa 79
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     caactggtcggcctacgagga 76
              |||||||||||||||||||||
Sbjct: 127229 caactggtcggcctacgagga 127209
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>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14
          Length = 346301

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     caactggtcggcctacgagga 76
              |||||||||||||||||||||
Sbjct: 200236 caactggtcggcctacgagga 200216
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    caactggtcggcctacgagga 76
             |||||||||||||||||||||
Sbjct: 14832 caactggtcggcctacgagga 14812
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 56      caactggtcggcctacgagga 76
               |||||||||||||||||||||
Sbjct: 4784775 caactggtcggcctacgagga 4784755
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>ref|XM_801126.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053507029.10) partial mRNA
          Length = 1941

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  ctacgaggaggccctcaagg 87
           ||||||||||||||||||||
Sbjct: 801 ctacgaggaggccctcaagg 820
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>ref|NM_142283.2| Drosophila melanogaster CG17565-RA (CG17565), mRNA
          Length = 1594

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 ggcgactggatagcccagtg 158
           ||||||||||||||||||||
Sbjct: 748 ggcgactggatagcccagtg 767
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>gb|AY051869.1| Drosophila melanogaster LD36454 full length cDNA
          Length = 1588

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 ggcgactggatagcccagtg 158
           ||||||||||||||||||||
Sbjct: 728 ggcgactggatagcccagtg 747
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>gb|AC011615.4|AC011615 Drosophila melanogaster, chromosome 3R, region 89D-89D, BAC clone
             BACR01H23, complete sequence
          Length = 199653

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ggcgactggatagcccagtg 158
             ||||||||||||||||||||
Sbjct: 93526 ggcgactggatagcccagtg 93545
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>gb|AE003713.3| Drosophila melanogaster chromosome 3R, section 51 of 118 of the
             complete sequence
          Length = 226561

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   ggcgactggatagcccagtg 158
             ||||||||||||||||||||
Sbjct: 91694 ggcgactggatagcccagtg 91713
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      aactggtcggcctacgagga 76
               ||||||||||||||||||||
Sbjct: 7087914 aactggtcggcctacgagga 7087933
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>ref|XM_541781.2| PREDICTED: Canis familiaris similar to N-glycosylase/DNA lyase
           (LOC484666), mRNA
          Length = 1005

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 67  cctacgaggaggccctcaaggcc 89
           ||||||||||||||| |||||||
Sbjct: 665 cctacgaggaggcccacaaggcc 687
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>emb|CR652320.2|CNS0F2AU Tetraodon nigroviridis full-length cDNA
          Length = 509

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 68  ctacgaggaggccctcaaggcca 90
           |||||||||| ||||||||||||
Sbjct: 117 ctacgaggagtccctcaaggcca 139
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      gaggaggccctcaaggcca 90
               |||||||||||||||||||
Sbjct: 4307212 gaggaggccctcaaggcca 4307194


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 784,757
Number of Sequences: 3902068
Number of extensions: 784757
Number of successful extensions: 50563
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50375
Number of HSP's gapped (non-prelim): 169
length of query: 173
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 151
effective length of database: 17,147,199,772
effective search space: 2589227165572
effective search space used: 2589227165572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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