| Clone Name | baal25k14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF274001.1|AF274001 Triticum aestivum oxidase (IM1) mRNA, partial cds Length = 1073 Score = 842 bits (425), Expect = 0.0 Identities = 506/534 (94%), Gaps = 1/534 (0%) Strand = Plus / Plus Query: 11 tcgagcagtccttcaacgtattcctcacggnacaccgtcatcctgatactcgatattctg 70 |||||||||||||||||||||||||||||| | || |||||| | ||||||||||||||| Sbjct: 77 tcgagcagtccttcaacgtattcctcacgg-atactgtcatctttatactcgatattctg 135 Query: 71 taccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgccctat 130 || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 136 tatcgtgaccgcgactacgcaaggttcttcgtgctcgagaccatcgccagggtgccctat 195 Query: 131 ttcgcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgac 190 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 196 ttcgcgtttatatcggtgcttcacttgtacgagacctttggatggtcgagaagagctgat 255 Query: 191 aacatcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaa 250 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 256 aacatcaaagtgcactttgctgaaagcatgaatgagttccatcacctcttaatcatggag 315 Query: 251 gcgttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnnnn 310 || ||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 316 gcattgggtggcaactctgtatggcttgatcgctttcttgcgcggtttagcgcctttttt 375 Query: 311 nactactttgtcactgtcgccatgtacatgctgagcccaagaatggcataccacttttct 370 ||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||| Sbjct: 376 tactacttcgtcactgttggcatgtacatgctgagcccaagaatggcatatcacttttct 435 Query: 371 gaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagctcaatggagag 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 gaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagctcaatggagag 495 Query: 431 gagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatctc 490 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 gagttgaaaaaattaccagctccagaggtggctgtaaactattacatgaatgaggatctc 555 Query: 491 tacatgtttgatgagtttcaaacatcaagagctccaaattctaggaggcctaaa 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 tacatgtttgatgagtttcaaacatcaagagctccaaattctaggaggcctaaa 609
>ref|XM_474279.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 339 bits (171), Expect = 6e-90 Identities = 398/476 (83%) Strand = Plus / Plus Query: 69 tgtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgccct 128 ||||||| |||||| ||||||| || || ||||| | ||||| || || |||||||| | Sbjct: 326 tgtaccgtgaccgcaactacgctagatttttcgtattggagacgattgctagggtgccgt 385 Query: 129 atttcgcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctg 188 |||| |||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| | Sbjct: 386 attttgcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccg 445 Query: 189 acaacatcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatgg 248 | | || || ||||||||||| || ||| ||||||||||||||||||||||||||||| Sbjct: 446 attatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgg 505 Query: 249 aagcgttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnn 308 ||| ||||||||||||||| ||||| ||||||| |||||||| |||||| ||| Sbjct: 506 aagaattgggtggcaactctttatgggttgatcgttttcttgcacggtttgctgcatttt 565 Query: 309 nnnactactttgtcactgtcgccatgtacatgctgagcccaagaatggcataccactttt 368 ||||||| | ||||| || ||||||||| |||||||||||||||||||||| |||| Sbjct: 566 tttactacttcatgactgttgcgatgtacatggtgagcccaagaatggcataccattttt 625 Query: 369 ctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagctcaatggag 428 |||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||| || Sbjct: 626 ctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagctccatgaag 685 Query: 429 aggagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatc 488 | |||||||| || ||||||||||| |||| |||| ||||||||||| |||||||||||| Sbjct: 686 atgagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatc 745 Query: 489 tctacatgtttgatgagtttcaaacatcaagagctccaaattctaggaggcctaaa 544 | ||| | || ||||| ||||||||| |||||| ||| ||||||||| |||||| Sbjct: 746 tttacttattcgatgaatttcaaacagcaagagtcccatgttctaggagacctaaa 801
>gb|AF085174.3| Oryza sativa (japonica cultivar-group) oxidase (IM1) mRNA, complete cds; nuclear gene for plastid product Length = 1564 Score = 339 bits (171), Expect = 6e-90 Identities = 398/476 (83%) Strand = Plus / Plus Query: 69 tgtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgccct 128 ||||||| |||||| ||||||| || || ||||| | ||||| || || |||||||| | Sbjct: 326 tgtaccgtgaccgcaactacgctagatttttcgtattggagacgattgctagggtgccgt 385 Query: 129 atttcgcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctg 188 |||| |||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| | Sbjct: 386 attttgcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccg 445 Query: 189 acaacatcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatgg 248 | | || || ||||||||||| || ||| ||||||||||||||||||||||||||||| Sbjct: 446 attatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgg 505 Query: 249 aagcgttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnn 308 ||| ||||||||||||||| ||||| ||||||| |||||||| |||||| ||| Sbjct: 506 aagaattgggtggcaactctttatgggttgatcgttttcttgcacggtttgctgcatttt 565 Query: 309 nnnactactttgtcactgtcgccatgtacatgctgagcccaagaatggcataccactttt 368 ||||||| | ||||| || ||||||||| |||||||||||||||||||||| |||| Sbjct: 566 tttactacttcatgactgttgcgatgtacatggtgagcccaagaatggcataccattttt 625 Query: 369 ctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagctcaatggag 428 |||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||| || Sbjct: 626 ctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagctccatgaag 685 Query: 429 aggagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatc 488 | |||||||| || ||||||||||| |||| |||| ||||||||||| |||||||||||| Sbjct: 686 atgagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatc 745 Query: 489 tctacatgtttgatgagtttcaaacatcaagagctccaaattctaggaggcctaaa 544 | ||| | || ||||| ||||||||| |||||| ||| ||||||||| |||||| Sbjct: 746 tttacttattcgatgaatttcaaacagcaagagtcccatgttctaggagacctaaa 801
>dbj|AK067891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124H21, full insert sequence Length = 1579 Score = 339 bits (171), Expect = 6e-90 Identities = 398/476 (83%) Strand = Plus / Plus Query: 69 tgtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgccct 128 ||||||| |||||| ||||||| || || ||||| | ||||| || || |||||||| | Sbjct: 380 tgtaccgtgaccgcaactacgctagatttttcgtattggagacgattgctagggtgccgt 439 Query: 129 atttcgcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctg 188 |||| |||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| | Sbjct: 440 attttgcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccg 499 Query: 189 acaacatcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatgg 248 | | || || ||||||||||| || ||| ||||||||||||||||||||||||||||| Sbjct: 500 attatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgg 559 Query: 249 aagcgttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnn 308 ||| ||||||||||||||| ||||| ||||||| |||||||| |||||| ||| Sbjct: 560 aagaattgggtggcaactctttatgggttgatcgttttcttgcacggtttgctgcatttt 619 Query: 309 nnnactactttgtcactgtcgccatgtacatgctgagcccaagaatggcataccactttt 368 ||||||| | ||||| || ||||||||| |||||||||||||||||||||| |||| Sbjct: 620 tttactacttcatgactgttgcgatgtacatggtgagcccaagaatggcataccattttt 679 Query: 369 ctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagctcaatggag 428 |||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||| || Sbjct: 680 ctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagctccatgaag 739 Query: 429 aggagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatc 488 | |||||||| || ||||||||||| |||| |||| ||||||||||| |||||||||||| Sbjct: 740 atgagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatc 799 Query: 489 tctacatgtttgatgagtttcaaacatcaagagctccaaattctaggaggcctaaa 544 | ||| | || ||||| ||||||||| |||||| ||| ||||||||| |||||| Sbjct: 800 tttacttattcgatgaatttcaaacagcaagagtcccatgttctaggagacctaaa 855
>ref|NM_185204.1| Oryza sativa (japonica cultivar-group), mRNA Length = 504 Score = 121 bits (61), Expect = 3e-24 Identities = 169/205 (82%) Strand = Plus / Plus Query: 69 tgtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgccct 128 ||||||| |||||| ||||||| || || ||||| | ||||| || || |||||||| | Sbjct: 299 tgtaccgtgaccgcaactacgctagatttttcgtcttggagacgattgctagggtgccgt 358 Query: 129 atttcgcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctg 188 |||| |||||||| || ||||||| |||| || || ||||| |||| ||| ||||||| Sbjct: 359 attttgcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctg 418 Query: 189 acaacatcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatgg 248 | | || || ||||||||||| || ||| ||||||||||||||||||||||||||||| Sbjct: 419 attatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgg 478 Query: 249 aagcgttgggtggcaactctgtatg 273 ||| ||||||||||||||| |||| Sbjct: 479 aagaattgggtggcaactctttatg 503
>emb|AJ234437.1|HVU234437 Hordeum vulgare partial mRNA; clone cMWG0720 Length = 231 Score = 95.6 bits (48), Expect = 1e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 493 catgtttgatgagtttcaaacatcaagagctccaaattctaggaggcctaaa 544 ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3 catgtttgatgagtttcaaacatcaagagctccaaattccaggaggcctaaa 54
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence Length = 190432 Score = 91.7 bits (46), Expect = 2e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| || | Sbjct: 70370 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 70311 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 70310 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 70253 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 360 accacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagc 419 |||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 69801 accatttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagc 69742 Query: 420 tc 421 || Sbjct: 69741 tc 69740 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 431 gagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatct 489 |||||||| || ||||||||||| |||| |||| ||||||||||| ||||||||||||| Sbjct: 69336 gagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatct 69278 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/106 (81%) Strand = Plus / Minus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnnnnnac 313 ||||||||||||||| ||||| ||||||| |||||||| |||||| ||| || Sbjct: 70018 ttgggtggcaactctttatgggttgatcgttttcttgcacggtttgctgcatttttttac 69959 Query: 314 tactttgtcactgtcgccatgtacatgctgagcccaagaatggcat 359 ||||| | ||||| || ||||||||| |||||||||||||||||| Sbjct: 69958 tacttcatgactgttgcgatgtacatggtgagcccaagaatggcat 69913
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 91.7 bits (46), Expect = 2e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| || | Sbjct: 34158988 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 34158929 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 34158928 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 34158871 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 360 accacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagc 419 |||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 34158419 accatttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagc 34158360 Query: 420 tc 421 || Sbjct: 34158359 tc 34158358 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 431 gagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatct 489 |||||||| || ||||||||||| |||| |||| ||||||||||| ||||||||||||| Sbjct: 34157954 gagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatct 34157896 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/106 (81%) Strand = Plus / Minus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnnnnnac 313 ||||||||||||||| ||||| ||||||| |||||||| |||||| ||| || Sbjct: 34158636 ttgggtggcaactctttatgggttgatcgttttcttgcacggtttgctgcatttttttac 34158577 Query: 314 tactttgtcactgtcgccatgtacatgctgagcccaagaatggcat 359 ||||| | ||||| || ||||||||| |||||||||||||||||| Sbjct: 34158576 tacttcatgactgttgcgatgtacatggtgagcccaagaatggcat 34158531
>gb|AF288401.1|AF288401 Oryza sativa IM pseudogene, mRNA sequence Length = 1024 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 431 gagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatctc 490 |||||||| || ||||||||||| |||| |||| ||||||||||| ||||||||||||| Sbjct: 494 gagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatctt 553 Query: 491 tacatgtttgatgagtttcaaacatcaagagctccaaattctaggaggcctaaa 544 ||| | || ||||| ||||||||| |||||| ||| ||||||||| |||||| Sbjct: 554 tacttattcgatgaatttcaaacagcaagagtcccatgttctaggagacctaaa 607 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 360 accacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagc 419 |||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 29 accatttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagc 88 Query: 420 tc 421 || Sbjct: 89 tc 90
>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete sequence Length = 99356 Score = 91.7 bits (46), Expect = 2e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| || | Sbjct: 75281 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 75222 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 75221 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 75164 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 360 accacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagc 419 |||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 74712 accatttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagc 74653 Query: 420 tc 421 || Sbjct: 74652 tc 74651 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 431 gagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatct 489 |||||||| || ||||||||||| |||| |||| ||||||||||| ||||||||||||| Sbjct: 74247 gagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatct 74189 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/106 (81%) Strand = Plus / Minus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnnnnnac 313 ||||||||||||||| ||||| ||||||| |||||||| |||||| ||| || Sbjct: 74929 ttgggtggcaactctttatgggttgatcgttttcttgcacggtttgctgcatttttttac 74870 Query: 314 tactttgtcactgtcgccatgtacatgctgagcccaagaatggcat 359 ||||| | ||||| || ||||||||| |||||||||||||||||| Sbjct: 74869 tacttcatgactgttgcgatgtacatggtgagcccaagaatggcat 74824
>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence Length = 101125 Score = 91.7 bits (46), Expect = 2e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| || | Sbjct: 9651 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 9592 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 9591 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 9534 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 360 accacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagc 419 |||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 9082 accatttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagc 9023 Query: 420 tc 421 || Sbjct: 9022 tc 9021 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 431 gagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatct 489 |||||||| || ||||||||||| |||| |||| ||||||||||| ||||||||||||| Sbjct: 8617 gagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatct 8559 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/106 (81%) Strand = Plus / Minus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgcgcggtttagtgccnnnnnnnac 313 ||||||||||||||| ||||| ||||||| |||||||| |||||| ||| || Sbjct: 9299 ttgggtggcaactctttatgggttgatcgttttcttgcacggtttgctgcatttttttac 9240 Query: 314 tactttgtcactgtcgccatgtacatgctgagcccaagaatggcat 359 ||||| | ||||| || ||||||||| |||||||||||||||||| Sbjct: 9239 tacttcatgactgttgcgatgtacatggtgagcccaagaatggcat 9194
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 357 cataccacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttcctta 416 |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 35323718 cataccgcttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttatta 35323777 Query: 417 agctc 421 ||||| Sbjct: 35323778 agctc 35323782 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| || ||||||| |||| || || ||||| |||| ||| |||||||| | Sbjct: 35322780 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 35322839 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 35322840 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 35322897 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 332 atgtacatgctgagcccaagaatggcat 359 ||||||||| |||||||||||||||||| Sbjct: 35323592 atgtacatggtgagcccaagaatggcat 35323619 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgc 291 ||||||||||||||| |||| ||||||| |||||||| Sbjct: 35323134 ttgggtggcaactctttatgagttgatcgttttcttgc 35323171
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 357 cataccacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttcctta 416 |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 35413790 cataccgcttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttatta 35413849 Query: 417 agctc 421 ||||| Sbjct: 35413850 agctc 35413854 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| || ||||||| |||| || || ||||| |||| ||| |||||||| | Sbjct: 35412852 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 35412911 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 35412912 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 35412969 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 332 atgtacatgctgagcccaagaatggcat 359 ||||||||| |||||||||||||||||| Sbjct: 35413664 atgtacatggtgagcccaagaatggcat 35413691 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgc 291 ||||||||||||||| |||| ||||||| |||||||| Sbjct: 35413206 ttgggtggcaactctttatgagttgatcgttttcttgc 35413243
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Minus Query: 357 cataccacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttcctta 416 |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 44736 cataccgcttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttatta 44677 Query: 417 agctc 421 ||||| Sbjct: 44676 agctc 44672 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Minus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| || ||||||| |||| || || ||||| |||| ||| |||||||| | Sbjct: 45674 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 45615 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 45614 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 45557 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Minus Query: 332 atgtacatgctgagcccaagaatggcat 359 ||||||||| |||||||||||||||||| Sbjct: 44862 atgtacatggtgagcccaagaatggcat 44835 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Minus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgc 291 ||||||||||||||| |||| ||||||| |||||||| Sbjct: 45320 ttgggtggcaactctttatgagttgatcgttttcttgc 45283
>dbj|AK073859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073L16, full insert sequence Length = 3094 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 357 cataccacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttcctta 416 |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct: 1773 cataccgcttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttatta 1832 Query: 417 agctc 421 ||||| Sbjct: 1833 agctc 1837 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaac 193 |||||||| || ||||||| |||| || || ||||| |||| ||| |||||||| | Sbjct: 834 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 893 Query: 194 atcaaagtgcactttgcagaaagcatgaatgagttccatcacctcttaatcatggaag 251 || || ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 894 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 951 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 332 atgtacatgctgagcccaagaatggcat 359 ||||||||| |||||||||||||||||| Sbjct: 1647 atgtacatggtgagcccaagaatggcat 1674 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 254 ttgggtggcaactctgtatggattgatcgctttcttgc 291 ||||||||||||||| |||| ||||||| |||||||| Sbjct: 1189 ttgggtggcaactctttatgagttgatcgttttcttgc 1226
>gb|AF241239.1|AF241239 Oryza sativa oxidase (IM) gene, partial cds Length = 1910 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 360 accacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagttccttaagc 419 |||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||| Sbjct: 194 accatttttctgaatgtgttgagaggcatgcgtactcaacctatgacaagtttattaagc 253 Query: 420 tc 421 || Sbjct: 254 tc 255 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 431 gagttgaagaaactaccagctccagaggtggctgtaaactattacatgaatgaggatct 489 |||||||| || ||||||||||| |||| |||| ||||||||||| ||||||||||||| Sbjct: 659 gagttgaaaaagctaccagctcccgaggcggctttaaactattacctgaatgaggatct 717 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 323 actgtcgccatgtacatgctgagcccaagaatggcat 359 ||||| || ||||||||| |||||||||||||||||| Sbjct: 46 actgttgcgatgtacatggtgagcccaagaatggcat 82
>ref|NM_118352.2| Arabidopsis thaliana IM (IMMUTANS) AT4G22260 (IM) mRNA, complete cds Length = 1431 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 807 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 866 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 867 gataaatttctcaaggccagtggagaggagttgaagaa 904 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 555 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 614 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 615 catatgtatgagacctttggttggtggaggagagc 649 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 960 tttgatgagttccaaacatcaagaactcc 988
>gb|BT000558.1| Arabidopsis thaliana unknown protein (At4g22260/T10I14_90) mRNA, complete cds Length = 1056 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 643 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 702 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 703 gataaatttctcaaggccagtggagaggagttgaagaa 740 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 391 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 450 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 451 catatgtatgagacctttggttggtggaggagagc 485 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 796 tttgatgagttccaaacatcaagaactcc 824
>gb|AF339717.1| Arabidopsis thaliana unknown protein (At4g22260) mRNA, complete cds Length = 1105 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 643 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 702 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 703 gataaatttctcaaggccagtggagaggagttgaagaa 740 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 391 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 450 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 451 catatgtatgagacctttggttggtggaggagagc 485 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 796 tttgatgagttccaaacatcaagaactcc 824
>gb|AF326898.1| Arabidopsis thaliana unknown protein (At4g22260) mRNA, complete cds Length = 1393 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 754 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 813 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 814 gataaatttctcaaggccagtggagaggagttgaagaa 851 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 502 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 561 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 562 catatgtatgagacctttggttggtggaggagagc 596 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 907 tttgatgagttccaaacatcaagaactcc 935
>gb|AY045699.1| Arabidopsis thaliana AT4g22260/T10I14_90 mRNA, complete cds Length = 1377 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 754 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 813 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 814 gataaatttctcaaggccagtggagaggagttgaagaa 851 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 502 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 561 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 562 catatgtatgagacctttggttggtggaggagagc 596 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 907 tttgatgagttccaaacatcaagaactcc 935
>gb|AF324663.2|AF324663 Arabidopsis thaliana AT4g22260 (AT4g22260/T10I14_90) mRNA, complete cds Length = 1377 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 754 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 813 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 814 gataaatttctcaaggccagtggagaggagttgaagaa 851 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 502 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 561 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 562 catatgtatgagacctttggttggtggaggagagc 596 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 907 tttgatgagttccaaacatcaagaactcc 935
>emb|AJ004881.1|ATJ004881 Arabidopsis thaliana mRNA for Immutans protein Length = 1396 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 772 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 831 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 832 gataaatttctcaaggccagtggagaggagttgaagaa 869 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 520 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 579 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 580 catatgtatgagacctttggttggtggaggagagc 614 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 925 tttgatgagttccaaacatcaagaactcc 953
>gb|AF098072.1|AF098072 Arabidopsis thaliana IMMUTANS (IM) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1448 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttat 403 ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 807 agccctagaatggcatatcacttttcggaatgtgtggagagtcatgcatatgagacttat 866 Query: 404 gacaagttccttaagctcaatggagaggagttgaagaa 441 || || || || ||| || |||||||||||||||||| Sbjct: 867 gataaatttctcaaggccagtggagaggagttgaagaa 904 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 92 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 151 |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct: 555 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 614 Query: 152 catttgtacgagacctttggatggtcgagaagagc 186 ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 615 catatgtatgagacctttggttggtggaggagagc 649 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 960 tttgatgagttccaaacatcaagaactcc 988
>gb|AF302931.1|AF302931 Lycopersicon esculentum plastid quinol oxidase mRNA, complete cds Length = 1463 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 342 tgagcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatac 394 ||||||| ||||||||||| || || ||||||||||| ||||| ||||||||| Sbjct: 750 tgagcccgagaatggcatatcatttctctgaatgtgtggagagccatgcatac 802 Score = 48.1 bits (24), Expect = 0.030 Identities = 87/108 (80%) Strand = Plus / Plus Query: 119 agggtgccctatttcgcgtttatatcggtgcttcatttgtacgagacctttggatggtcg 178 ||||| || ||||| || ||||||||||| ||||| |||| |||| |||||| |||| | Sbjct: 527 agggttccttattttgcatttatatcggttcttcacatgtatgagagctttggctggtgg 586 Query: 179 agaagagctgacaacatcaaagtgcactttgcagaaagcatgaatgag 226 ||||| || || | || |||||||| ||||| |||||| ||||||| Sbjct: 587 agaagggcagattatatgaaagtgcattttgctgaaagctggaatgag 634
>gb|AF177980.1|AF177980 Lycopersicon esculentum plastid terminal oxidase (PTOX) mRNA, complete cds; nuclear gene encoding plastid protein Length = 1273 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 342 tgagcccaagaatggcataccacttttctgaatgtgttgagaggcatgcatac 394 ||||||| ||||||||||| || || ||||||||||| ||||| ||||||||| Sbjct: 780 tgagcccgagaatggcatatcatttctctgaatgtgtggagagccatgcatac 832 Score = 48.1 bits (24), Expect = 0.030 Identities = 87/108 (80%) Strand = Plus / Plus Query: 119 agggtgccctatttcgcgtttatatcggtgcttcatttgtacgagacctttggatggtcg 178 ||||| || ||||| || ||||||||||| ||||| |||| |||| |||||| |||| | Sbjct: 557 agggttccttattttgcatttatatcggttcttcacatgtatgagagctttggctggtgg 616 Query: 179 agaagagctgacaacatcaaagtgcactttgcagaaagcatgaatgag 226 ||||| || || | || |||||||| ||||| |||||| ||||||| Sbjct: 617 agaagggcagattatatgaaagtgcattttgctgaaagctggaatgag 664
>emb|BX826496.1|CNS0A47R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZH07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1282 Score = 48.1 bits (24), Expect = 0.030 Identities = 72/88 (81%) Strand = Plus / Plus Query: 352 aatggcataccacttttctgaatgtgttgagaggcatgcatactcaacttatgacaagtt 411 ||||||||| |||||||| |||||||| || || |||||||| |||||||| || || Sbjct: 729 aatggcatatcacttttcggaatgtgtggacagtcatgcatatgagacttatgataaatt 788 Query: 412 ccttaagctcaatggagaggagttgaag 439 || ||| || |||||||||||||||| Sbjct: 789 tctcaaggccagtggagaggagttgaag 816 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 875 tttgatgagttccaaacatcaagaactcc 903
>gb|AY533825.1| Citrus sinensis plastid terminal oxidase (PTOX) mRNA, partial cds; nuclear gene for plastid product Length = 207 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 344 agcccaagaatggcataccactt 366 ||||||||||||||||||||||| Sbjct: 185 agcccaagaatggcataccactt 207
>gb|AF302932.1|AF302932 Lycopersicon esculentum plastid quinol oxidase gene, complete cds Length = 5019 Score = 44.1 bits (22), Expect = 0.47 Identities = 73/90 (81%) Strand = Plus / Plus Query: 137 tttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaacatc 196 ||||||||||| ||||| |||| |||| |||||| |||| |||||| || || | || Sbjct: 2469 tttatatcggttcttcacatgtatgagagctttggctggtggagaagggcagattatatg 2528 Query: 197 aaagtgcactttgcagaaagcatgaatgag 226 |||||||| ||||| |||||| ||||||| Sbjct: 2529 aaagtgcattttgctgaaagctggaatgag 2558
>gb|AF177979.1|AF177979 Lycopersicon esculentum plastid terminal oxidase (PTOX) gene, complete cds; nuclear gene encoding plastid protein Length = 4766 Score = 44.1 bits (22), Expect = 0.47 Identities = 73/90 (81%) Strand = Plus / Plus Query: 137 tttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagctgacaacatc 196 ||||||||||| ||||| |||| |||| |||||| |||| |||||| || || | || Sbjct: 2436 tttatatcggttcttcacatgtatgagagctttggctggtggagaagggcagattatatg 2495 Query: 197 aaagtgcactttgcagaaagcatgaatgag 226 |||||||| ||||| |||||| ||||||| Sbjct: 2496 aaagtgcattttgctgaaagctggaatgag 2525
>emb|AL161432.17| Human DNA sequence from clone RP11-569I20 on chromosome 13, complete sequence Length = 67475 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 424 tggagaggagttgaagaaact 444 ||||||||||||||||||||| Sbjct: 63820 tggagaggagttgaagaaact 63840
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagc 186 |||||||| || ||||| ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 7979 gcgtttatgtctgtgctacatatgtatgagacctttggttggtggaggagagc 7927
>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project) Length = 82891 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Minus Query: 134 gcgtttatatcggtgcttcatttgtacgagacctttggatggtcgagaagagc 186 |||||||| || ||||| ||| |||| ||||||||||| |||| ||| ||||| Sbjct: 41884 gcgtttatgtctgtgctacatatgtatgagacctttggttggtggaggagagc 41832
>emb|AL646054.20| Mouse DNA sequence from clone RP23-157N11 on chromosome 1 Contains the Cd28 gene for CD28 antigen, a lactate dehydrogenase pseudogene, a ribosomal protein S6 (Rps6) pseudogene, a mortality factor 4 (MORF4) pseudogene, a eukaryotic translation initiation factor 4A1 (Eif4a1) pseudogene, the 3' end of a variant of the Ctla4 gene for cytotoxic T-lymphocyte-associated protein 4 and two novel genes, complete sequence Length = 202305 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 tttgcagaaagcatgaatgag 226 ||||||||||||||||||||| Sbjct: 186100 tttgcagaaagcatgaatgag 186120
>dbj|AK221825.1| Arabidopsis thaliana mRNA for IMMUTANS (IM), complete cds, clone: RAFL21-95-D11 Length = 552 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 497 tttgatgagtttcaaacatcaagagctcc 525 ||||||||||| |||||||||||| |||| Sbjct: 93 tttgatgagttccaaacatcaagaactcc 121
>gb|AF177981.1|AF177981 Capsicum annuum plastid terminal oxidase (PTOX) mRNA, complete cds; nuclear gene encoding plastid protein Length = 1387 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 342 tgagcccaagaatggcataccacttttctgaatgtgt 378 ||||||| ||||||||||| || || ||||||||||| Sbjct: 673 tgagcccgagaatggcatatcatttctctgaatgtgt 709
>emb|AL929570.7| Mouse DNA sequence from clone RP23-74G9 on chromosome 2, complete sequence Length = 230193 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 486 atctctacatgtttgatgagt 506 ||||||||||||||||||||| Sbjct: 122640 atctctacatgtttgatgagt 122660
>gb|BC081726.1| Rattus norvegicus microtubule-associated protein, RP/EB family, member 1, mRNA (cDNA clone MGC:93188 IMAGE:7192469), complete cds Length = 2310 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 1016 tcaaagtgcactttgcagaa 1035
>ref|NM_138509.3| Rattus norvegicus microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA Length = 2310 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 1016 tcaaagtgcactttgcagaa 1035
>gb|AC091472.2| Mus musculus chromosome X clones RP21-90B15, RP21-12I6 complete sequence Length = 193449 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 122250 tcaaagtgcactttgcagaa 122269
>gb|BC064444.1| Mus musculus microtubule-associated protein, RP/EB family, member 1, mRNA (cDNA clone MGC:69614 IMAGE:6815724), complete cds Length = 3080 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 983 tcaaagtgcactttgcagaa 1002
>gb|BC052728.1| Mus musculus microtubule-associated protein, RP/EB family, member 1, mRNA (cDNA clone IMAGE:6815724), partial cds Length = 3080 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 983 tcaaagtgcactttgcagaa 1002
>gb|AE013158.1| Thermoanaerobacter tengcongensis MB4, section 185 of 244 of the complete genome Length = 11438 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 tcaatggagaggagttgaagaaac 443 |||||| ||||||||||||||||| Sbjct: 6842 tcaatgcagaggagttgaagaaac 6819
>ref|NM_007896.2| Mus musculus microtubule-associated protein, RP/EB family, member 1 (Mapre1), mRNA Length = 3080 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 983 tcaaagtgcactttgcagaa 1002
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 caccgtcatcctgatactcg 62 |||||||||||||||||||| Sbjct: 3958530 caccgtcatcctgatactcg 3958549
>gb|BC052405.1| Mus musculus microtubule-associated protein, RP/EB family, member 1, mRNA (cDNA clone IMAGE:5715929), partial cds Length = 2463 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 947 tcaaagtgcactttgcagaa 966
>gb|AC121236.18| Medicago truncatula clone mth2-12m19, complete sequence Length = 124839 Score = 40.1 bits (20), Expect = 7.4 Identities = 41/48 (85%) Strand = Plus / Minus Query: 427 agaggagttgaagaaactaccagctccagaggtggctgtaaactatta 474 |||||||||||| ||| | |||||||| ||||| ||||| || ||||| Sbjct: 18885 agaggagttgaaaaaaatgccagctcctgaggttgctgtgaattatta 18838
>gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosome 3, complete sequence Length = 194400 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 taccagctccagaggtggct 463 |||||||||||||||||||| Sbjct: 189194 taccagctccagaggtggct 189175
>gb|BC043333.1| Mus musculus cDNA clone IMAGE:5400756, **** WARNING: chimeric clone **** Length = 2347 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 1036 tcaaagtgcactttgcagaa 1055
>emb|AJ972481.1| Medicago truncatula nsp1-2 gene for Nodulation Signaling Pathway 1-2 protein Length = 6813 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tttctgaatgtgttgagaggcatg 389 |||||||| ||||||||||||||| Sbjct: 5432 tttctgaaggtgttgagaggcatg 5455
>emb|AJ972480.1| Medicago truncatula nsp1-1 gene for Nodulation Signaling Pathway 1-1 protein Length = 6813 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tttctgaatgtgttgagaggcatg 389 |||||||| ||||||||||||||| Sbjct: 5432 tttctgaaggtgttgagaggcatg 5455
>emb|AJ972478.1| Medicago truncatula NSP1 gene for Nodulation Signaling Pathway 1 protein Length = 6813 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tttctgaatgtgttgagaggcatg 389 |||||||| ||||||||||||||| Sbjct: 5432 tttctgaaggtgttgagaggcatg 5455
>emb|AJ972473.1| Medicago truncatula partial NSP1 gene for Nodulation Signaling Pathway 1 protein Length = 63146 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 tttctgaatgtgttgagaggcatg 389 |||||||| ||||||||||||||| Sbjct: 35731 tttctgaaggtgttgagaggcatg 35708
>emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chromosome 1 Contains a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene, part of the RGS7 gene for regulator of G-protein signalling 7 and a ribosomal protein large P1 (RPLP1) pseudogene, complete sequence Length = 155156 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 ttcaaacatcaagagctcca 526 |||||||||||||||||||| Sbjct: 2652 ttcaaacatcaagagctcca 2671
>emb|AL354893.14| Human DNA sequence from clone RP11-80I15 on chromosome 9 Contains an RPS26 (ribosomal protein S26) pseudogene, the 3' end of the FANCC gene for Fanconi anemia complementation group C, the 3' end of gene FLJ14675, a novel gene and a CpG island, complete sequence Length = 103980 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 acttttctgaatgtgttgag 382 |||||||||||||||||||| Sbjct: 16772 acttttctgaatgtgttgag 16753
>gb|AC011726.11| Homo sapiens chromosome , clone RP11-14I17, complete sequence Length = 170074 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ttttctgaatgtgttgagag 384 |||||||||||||||||||| Sbjct: 54936 ttttctgaatgtgttgagag 54955
>ref|XM_782544.1| PREDICTED: Strongylocentrotus purpuratus similar to CG15730-PA (LOC582600), mRNA Length = 1656 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 478 gaatgaggatctctacatgtttga 501 |||||||||||||||||| ||||| Sbjct: 351 gaatgaggatctctacatctttga 374
>gb|AC132807.3| Homo sapiens chromosome 3 clone RP11-147G2, complete sequence Length = 171678 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 catcgccagggtgccctatt 131 |||||||||||||||||||| Sbjct: 123594 catcgccagggtgccctatt 123575
>gb|AC158365.2| Mus musculus BAC clone RP23-182N12 from chromosome 12, complete sequence Length = 220129 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 taccacttttctgaatgtgt 378 |||||||||||||||||||| Sbjct: 85300 taccacttttctgaatgtgt 85281
>gb|AC022911.6| Homo sapiens chromosome 8, clone RP11-722A15, complete sequence Length = 176063 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ttttctgaatgtgttgagag 384 |||||||||||||||||||| Sbjct: 54185 ttttctgaatgtgttgagag 54166
>emb|CR858311.1| Pongo pygmaeus mRNA; cDNA DKFZp468G237 (from clone DKFZp468G237) Length = 3340 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ataccacttttctgaatgtg 377 |||||||||||||||||||| Sbjct: 1970 ataccacttttctgaatgtg 1951
>dbj|AK146206.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730034C08 product:microtubule-associated protein, RP/EB family, member 1, full insert sequence Length = 2286 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 990 tcaaagtgcactttgcagaa 1009
>dbj|AK154245.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630011N13 product:microtubule-associated protein, RP/EB family, member 1, full insert sequence Length = 1291 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 1016 tcaaagtgcactttgcagaa 1035
>gb|AC150441.2| Medicago truncatula chromosome 2 BAC clone mth2-19l4, complete sequence Length = 120811 Score = 40.1 bits (20), Expect = 7.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 427 agaggagttgaagaaactaccagctccagaggtggctgtaaactatta 474 |||||||||||| ||| | |||||||| ||||| ||||| || ||||| Sbjct: 16936 agaggagttgaaaaaaatgccagctcctgaggttgctgtgaattatta 16983
>dbj|AK013626.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900038A16 product:microtubule-associated protein, RP/EB family, member 1, full insert sequence Length = 1483 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 1012 tcaaagtgcactttgcagaa 1031
>gb|AC093752.2| Homo sapiens BAC clone RP11-33B1 from 4, complete sequence Length = 130879 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 ccagaggtggctgtaaacta 471 |||||||||||||||||||| Sbjct: 51616 ccagaggtggctgtaaacta 51597
>gb|AC137672.2| Homo sapiens chromosome 3 clone RP11-72I12, complete sequence Length = 150313 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 catcgccagggtgccctatt 131 |||||||||||||||||||| Sbjct: 18395 catcgccagggtgccctatt 18376
>gb|AY220878.1| Homo sapiens Fanconi anemia, complementation group C (FANCC) gene, complete cds Length = 221989 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 acttttctgaatgtgttgag 382 |||||||||||||||||||| Sbjct: 163124 acttttctgaatgtgttgag 163105
>gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, complete sequence Length = 175751 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 accacttttctgaatgtgtt 379 |||||||||||||||||||| Sbjct: 58507 accacttttctgaatgtgtt 58526
>gb|AC079682.29| Mus musculus strain C57BL/6J chromosome 3 clone rp23-463h24, complete sequence Length = 181082 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 taccagctccagaggtggct 463 |||||||||||||||||||| Sbjct: 103496 taccagctccagaggtggct 103515
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete sequence Length = 226251 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 58728 tcaaagtgcactttgcagaa 58747
>gb|U51196.1|MMU51196 Mus musculus APC-binding protein EB1 homolog mRNA, complete cds Length = 1203 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 1002 tcaaagtgcactttgcagaa 1021
>emb|AL672002.14| Mouse DNA sequence from clone RP23-252M19 on chromosome X, complete sequence Length = 225712 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tcaaagtgcactttgcagaa 214 |||||||||||||||||||| Sbjct: 125973 tcaaagtgcactttgcagaa 125992 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,054,143 Number of Sequences: 3902068 Number of extensions: 4054143 Number of successful extensions: 68230 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67977 Number of HSP's gapped (non-prelim): 243 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)