ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25k04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468164.1| Oryza sativa (japonica cultivar-group), mRNA 149 8e-33
2dbj|AK067937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
6dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
7emb|BX470173.6| Human DNA sequence from clone RP11-739C15 on chr... 46 0.084
8emb|BX470124.2| Human DNA sequence from clone XX-86143B6 on chro... 46 0.084
9gb|AY108770.1| Zea mays PCO069828 mRNA sequence 42 1.3
10gb|AC153729.1| Mus musculus BAC RP23-88C11 (Roswell Park Cancer... 40 5.2
11gb|AC105324.11| Mus musculus chromosome 15, clone RP24-311E18, c... 40 5.2
12gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, com... 40 5.2
13gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chrom... 40 5.2
14gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, com... 40 5.2
15ref|XM_542503.2| PREDICTED: Canis familiaris similar to SWA-70 p... 40 5.2
16emb|AL035416.7|HS782L23 Human DNA sequence from clone RP4-782L23... 40 5.2
17emb|Z95397.2|SPBC25H2 S.pombe chromosome II cosmid c25H2 40 5.2
18emb|BX901878.6| Zebrafish DNA sequence from clone DKEY-11O15 in ... 40 5.2
19gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 40 5.2
20gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence 40 5.2
21gb|AC113175.2| Homo sapiens chromosome 1 clone RP4-781A20, compl... 40 5.2
22gb|AC027141.7| Homo sapiens chromosome 18, clone RP11-29E21, com... 40 5.2
23gb|AC100794.2| Homo sapiens chromosome 18, clone CTD-2559F21, co... 40 5.2
24gb|AC092372.3| Homo sapiens chromosome 5 clone RP11-58M12, compl... 40 5.2
25gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, comp... 40 5.2
26ref|NM_001022274.1| Schizosaccharomyces pombe 972h- hypothetical... 40 5.2
27gb|AC012624.6| Homo sapiens chromosome 5 clone CTD-2082I17, comp... 40 5.2
28gb|AC026778.4|AC026778 Homo sapiens chromosome 5 clone CTC-428I1... 40 5.2
29gb|AF260580.1|AF260579S2 Mus musculus disabled-2 p96 (Dab2) gene... 40 5.2
30gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Can... 40 5.2
31gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, comple... 40 5.2 
>ref|XM_468164.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2888

 Score =  149 bits (75), Expect = 8e-33
 Identities = 165/195 (84%)
 Strand = Plus / Plus

                                                                        
Query: 193  agatcaggaccctgatgtgcacggaagctgcgaccagcacaaaagttctgggatcgaatc 252
            |||||||||  |||||||||| |||||  | || ||||| ||||||||||| || ||  |
Sbjct: 1992 agatcaggattctgatgtgcatggaagtggtgagcagcagaaaagttctggaattgaggc 2051

                                                                        
Query: 253  tacacccgctgaagctgaagctttgtctaaaggattacagactataaaaaatgatgatct 312
            |||| |||||||||| |||||||| || |||||| ||||||||||||||||||||||  |
Sbjct: 2052 tacaaccgctgaagcagaagctttatcaaaaggactacagactataaaaaatgatgactt 2111

                                                                        
Query: 313  ggaggaaatcaaagagcttggttcgggtacttatgggtcagtctttcatggtaaatggag 372
            ||||||||| |  ||||| ||||| |||||||||||  |||| |  ||||||||||||||
Sbjct: 2112 ggaggaaattagggagctaggttcaggtacttatggtgcagtttaccatggtaaatggag 2171

                           
Query: 373  gggatgtgatgttgc 387
             ||||||||||||||
Sbjct: 2172 aggatgtgatgttgc 2186
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>dbj|AK067937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122E21, full
            insert sequence
          Length = 2888

 Score =  149 bits (75), Expect = 8e-33
 Identities = 165/195 (84%)
 Strand = Plus / Plus

                                                                        
Query: 193  agatcaggaccctgatgtgcacggaagctgcgaccagcacaaaagttctgggatcgaatc 252
            |||||||||  |||||||||| |||||  | || ||||| ||||||||||| || ||  |
Sbjct: 1992 agatcaggattctgatgtgcatggaagtggtgagcagcagaaaagttctggaattgaggc 2051

                                                                        
Query: 253  tacacccgctgaagctgaagctttgtctaaaggattacagactataaaaaatgatgatct 312
            |||| |||||||||| |||||||| || |||||| ||||||||||||||||||||||  |
Sbjct: 2052 tacaaccgctgaagcagaagctttatcaaaaggactacagactataaaaaatgatgactt 2111

                                                                        
Query: 313  ggaggaaatcaaagagcttggttcgggtacttatgggtcagtctttcatggtaaatggag 372
            ||||||||| |  ||||| ||||| |||||||||||  |||| |  ||||||||||||||
Sbjct: 2112 ggaggaaattagggagctaggttcaggtacttatggtgcagtttaccatggtaaatggag 2171

                           
Query: 373  gggatgtgatgttgc 387
             ||||||||||||||
Sbjct: 2172 aggatgtgatgttgc 2186
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                            
Query: 290      cagactataaaaaatgatgatctggaggaaatcaaagagcttggttcgggtacttatggg 349
                ||||||||||||||||||||  |||||||||| |  ||||| ||||| ||||||||||| 
Sbjct: 33408548 cagactataaaaaatgatgacttggaggaaattagggagctaggttcaggtacttatggt 33408607

                                                      
Query: 350      tcagtctttcatggtaaatggaggggatgtgatgttgc 387
                 |||| |  |||||||||||||| ||||||||||||||
Sbjct: 33408608 gcagtttaccatggtaaatggagaggatgtgatgttgc 33408645



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                            
Query: 180      agaatactgatggagatcaggaccctgatgtgcacggaagctgcgaccagcacaaaagtt 239
                ||||||||| |  |||||||||  |||||||||| |||||  | || ||||| |||||||
Sbjct: 33408354 agaatactggtacagatcaggattctgatgtgcatggaagtggtgagcagcagaaaagtt 33408413

                                                                     
Query: 240      ctgggatcgaatctacacccgctgaagctgaagctttgtctaaaggattacag 292
                |||| || ||  ||||| |||||||||| |||||||| || |||||| |||||
Sbjct: 33408414 ctggaattgaggctacaaccgctgaagcagaagctttatcaaaaggactacag 33408466
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>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1316_E06
          Length = 110197

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 290   cagactataaaaaatgatgatctggaggaaatcaaagagcttggttcgggtacttatggg 349
             ||||||||||||||||||||  |||||||||| |  ||||| ||||| ||||||||||| 
Sbjct: 39167 cagactataaaaaatgatgacttggaggaaattagggagctaggttcaggtacttatggt 39226

                                                   
Query: 350   tcagtctttcatggtaaatggaggggatgtgatgttgc 387
              |||| |  |||||||||||||| ||||||||||||||
Sbjct: 39227 gcagtttaccatggtaaatggagaggatgtgatgttgc 39264



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                         
Query: 180   agaatactgatggagatcaggaccctgatgtgcacggaagctgcgaccagcacaaaagtt 239
             ||||||||| |  |||||||||  |||||||||| |||||  | || ||||| |||||||
Sbjct: 38973 agaatactggtacagatcaggattctgatgtgcatggaagtggtgagcagcagaaaagtt 39032

                                                                  
Query: 240   ctgggatcgaatctacacccgctgaagctgaagctttgtctaaaggattacag 292
             |||| || ||  ||||| |||||||||| |||||||| || |||||| |||||
Sbjct: 39033 ctggaattgaggctacaaccgctgaagcagaagctttatcaaaaggactacag 39085
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 358      tcatggtaaatggaggggatgtgatgttgc 387
                |||||||||||||||||||| |||||||||
Sbjct: 26018766 tcatggtaaatggaggggatctgatgttgc 26018795
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>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 358   tcatggtaaatggaggggatgtgatgttgc 387
             |||||||||||||||||||| |||||||||
Sbjct: 56624 tcatggtaaatggaggggatctgatgttgc 56653
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>emb|BX470173.6| Human DNA sequence from clone RP11-739C15 on chromosome 1, complete
             sequence
          Length = 66303

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 89    gagtctgagaagccagtagaggttcag 115
             ||||||||||||||||| |||||||||
Sbjct: 29151 gagtctgagaagccagtggaggttcag 29125
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>emb|BX470124.2| Human DNA sequence from clone XX-86143B6 on chromosome 1, complete
            sequence
          Length = 23128

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 89   gagtctgagaagccagtagaggttcag 115
            ||||||||||||||||| |||||||||
Sbjct: 3914 gagtctgagaagccagtggaggttcag 3888
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>gb|AY108770.1| Zea mays PCO069828 mRNA sequence
          Length = 1493

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 324 aagagcttggttcgggtacttatgggtcagtctttcatggtaaatggag 372
           ||||||||||||| || |||| |||  | |||| |||||||||||||||
Sbjct: 57  aagagcttggttctggaacttttggaactgtctatcatggtaaatggag 105
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>gb|AC153729.1| Mus musculus  BAC RP23-88C11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 250801

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     gaagccagtagaggttcagc 116
              ||||||||||||||||||||
Sbjct: 216084 gaagccagtagaggttcagc 216103
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>gb|AC105324.11| Mus musculus chromosome 15, clone RP24-311E18, complete sequence
          Length = 171004

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gagtctgagaagccagtaga 108
             ||||||||||||||||||||
Sbjct: 38151 gagtctgagaagccagtaga 38132
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>gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, complete sequence
          Length = 131719

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 294   ctataaaaaatgatgatctggaggaaat 321
             ||||| |||||||||| |||||||||||
Sbjct: 46473 ctatagaaaatgatgagctggaggaaat 46500
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>gb|AC182395.3| Pan troglodytes BAC clone CH251-484N21 from chromosome 2, complete
              sequence
          Length = 176398

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    aaagatggaaagaagtttga 177
              ||||||||||||||||||||
Sbjct: 151515 aaagatggaaagaagtttga 151496
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>gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, complete sequence
          Length = 169244

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 294   ctataaaaaatgatgatctggaggaaat 321
             ||||| |||||||||| |||||||||||
Sbjct: 58128 ctatagaaaatgatgagctggaggaaat 58101
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>ref|XM_542503.2| PREDICTED: Canis familiaris similar to SWA-70 protein (LOC485385),
            mRNA
          Length = 2001

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  tgacaaagatggaaagaagt 173
            ||||||||||||||||||||
Sbjct: 1041 tgacaaagatggaaagaagt 1060
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>emb|AL035416.7|HS782L23 Human DNA sequence from clone RP4-782L23 on chromosome 1p31.2-33
             Contains the 3' end of a novel gene (FLJ10986), two novel
             genes, the 5' end of the HOOK1 gene for hook homolog 1
             (Drosophila) and a CpG island, complete sequence
          Length = 123925

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    ggagaacagattaaatttcc 46
             ||||||||||||||||||||
Sbjct: 23703 ggagaacagattaaatttcc 23722
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>emb|Z95397.2|SPBC25H2 S.pombe chromosome II cosmid c25H2
          Length = 38585

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   aaatgatgatctggaggaaa 320
             ||||||||||||||||||||
Sbjct: 13498 aaatgatgatctggaggaaa 13517
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>emb|BX901878.6| Zebrafish DNA sequence from clone DKEY-11O15 in linkage group 21,
              complete sequence
          Length = 217310

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    ttacagactataaaaaatga 306
              ||||||||||||||||||||
Sbjct: 209876 ttacagactataaaaaatga 209857
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    aaagatggaaagaagtttga 177
              ||||||||||||||||||||
Sbjct: 128168 aaagatggaaagaagtttga 128149
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>gb|AC120781.23| Pan troglodytes clone rp43-28m17, complete sequence
          Length = 184706

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    aaagatggaaagaagtttga 177
              ||||||||||||||||||||
Sbjct: 119354 aaagatggaaagaagtttga 119373
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>gb|AC113175.2| Homo sapiens chromosome 1 clone RP4-781A20, complete sequence
          Length = 127627

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ggagaacagattaaatttcc 46
             ||||||||||||||||||||
Sbjct: 10424 ggagaacagattaaatttcc 10405
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>gb|AC027141.7| Homo sapiens chromosome 18, clone RP11-29E21, complete sequence
          Length = 146286

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    atgacaaagatggaaagaag 172
              ||||||||||||||||||||
Sbjct: 113330 atgacaaagatggaaagaag 113311
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>gb|AC100794.2| Homo sapiens chromosome 18, clone CTD-2559F21, complete sequence
          Length = 143575

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   atgacaaagatggaaagaag 172
             ||||||||||||||||||||
Sbjct: 22750 atgacaaagatggaaagaag 22731
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>gb|AC092372.3| Homo sapiens chromosome 5 clone RP11-58M12, complete sequence
          Length = 101220

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   cttatgggtcagtctttcat 361
             ||||||||||||||||||||
Sbjct: 89200 cttatgggtcagtctttcat 89219
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>gb|AC022121.6| Homo sapiens chromosome 5 clone CTD-2007H13, complete sequence
          Length = 219258

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    cttatgggtcagtctttcat 361
              ||||||||||||||||||||
Sbjct: 151713 cttatgggtcagtctttcat 151732
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>ref|NM_001022274.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC25H2.13c),
            partial mRNA
          Length = 6600

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 301  aaatgatgatctggaggaaa 320
            ||||||||||||||||||||
Sbjct: 5202 aaatgatgatctggaggaaa 5221
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>gb|AC012624.6| Homo sapiens chromosome 5 clone CTD-2082I17, complete sequence
          Length = 134365

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   cttatgggtcagtctttcat 361
             ||||||||||||||||||||
Sbjct: 55989 cttatgggtcagtctttcat 55970
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>gb|AC026778.4|AC026778 Homo sapiens chromosome 5 clone CTC-428I11, complete sequence
          Length = 195433

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   cttatgggtcagtctttcat 361
             ||||||||||||||||||||
Sbjct: 91986 cttatgggtcagtctttcat 92005
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>gb|AF260580.1|AF260579S2 Mus musculus disabled-2 p96 (Dab2) gene, exons 2 through 15, and
             complete cds
          Length = 29517

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gagtctgagaagccagtaga 108
             ||||||||||||||||||||
Sbjct: 20578 gagtctgagaagccagtaga 20597
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>gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 162273

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   aaatgatgatctggaggaaa 320
             ||||||||||||||||||||
Sbjct: 89575 aaatgatgatctggaggaaa 89594
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>gb|AC073869.5| Homo sapiens BAC clone RP11-109E12 from 2, complete sequence
          Length = 195280

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 158  aaagatggaaagaagtttga 177
            ||||||||||||||||||||
Sbjct: 4902 aaagatggaaagaagtttga 4883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,749,973
Number of Sequences: 3902068
Number of extensions: 3749973
Number of successful extensions: 92743
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92648
Number of HSP's gapped (non-prelim): 95
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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